Junko Tsuji

Junko Tsuji

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Junko Tsuji

Junko Tsuji

Publications by authors named "Junko Tsuji"

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8Publications

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Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.

BMC Bioinformatics 2017 Dec 1;18(Suppl 13):464. Epub 2017 Dec 1.

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 368 Plantation Street, Worcester, MA, 01605, USA.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-017-1875-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773893PMC
December 2017

DNApi: A De Novo Adapter Prediction Algorithm for Small RNA Sequencing Data.

PLoS One 2016 13;11(10):e0164228. Epub 2016 Oct 13.

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0164228PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063419PMC
May 2017

The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington's Disease.

PLoS One 2015 4;10(12):e0144398. Epub 2015 Dec 4.

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144398PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4670094PMC
June 2016

The PsychENCODE project.

Nat Neurosci 2015 Dec;18(12):1707-12

Yale University, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1038/nn.4156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675669PMC
December 2015

MitoFates: improved prediction of mitochondrial targeting sequences and their cleavage sites.

Mol Cell Proteomics 2015 Apr 10;14(4):1113-26. Epub 2015 Feb 10.

§Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan

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http://dx.doi.org/10.1074/mcp.M114.043083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390256PMC
April 2015

Bisulfighter: accurate detection of methylated cytosines and differentially methylated regions.

Nucleic Acids Res 2014 Apr 13;42(6):e45. Epub 2014 Jan 13.

Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan, Japan Science and Technology Agency, CREST, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan and Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, 55 Lake Avenue North, Worcester, MA 01655, USA.

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http://dx.doi.org/10.1093/nar/gkt1373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3973284PMC
April 2014

Mammalian NUMT insertion is non-random.

Nucleic Acids Res 2012 Oct 3;40(18):9073-88. Epub 2012 Jul 3.

Department of Computational Biology, Graduate School of Frontier Science, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan.

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http://dx.doi.org/10.1093/nar/gks424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467031PMC
October 2012