Publications by authors named "Jungnam Lee"

31Publications

Alpha 1 Antitrypsin-Deficient Macrophages Have Impaired Efferocytosis of Apoptotic Neutrophils.

Front Immunol 2020 20;11:574410. Epub 2020 Nov 20.

Division of Pulmonary, Critical Care and Sleep Medicine, University of Florida, Gainesville, FL, United States.

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November 2020

Effects of the establishment of a trauma center and a new protocol on patients with hemodynamically unstable pelvic fractures at a single institution in Korea.

Eur J Trauma Emerg Surg 2019 Apr 17;45(2):273-279. Epub 2018 Jan 17.

Department of Trauma Surgery, Gachon University Gil Medical Center, 21, Namdong-daero, 774 Beon-gil, Namdong-gu, Incheon, 21565, South Korea.

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April 2019

Human Primary Epithelial Cells Acquire an Epithelial-Mesenchymal-Transition Phenotype during Long-Term Infection by the Oral Opportunistic Pathogen, .

Front Cell Infect Microbiol 2017 1;7:493. Epub 2017 Dec 1.

Department of Oral Health Sciences, College of Dental Medicine, Medical University of South Carolina, Charleston, SC, United States.

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August 2018

Opportunistic Pathogen Modulates Danger Signal ATP-Mediated Antibacterial NOX2 Pathways in Primary Epithelial Cells.

Front Cell Infect Microbiol 2017 4;7:291. Epub 2017 Jul 4.

Department of Oral Health Sciences, Medical University of South CarolinaCharleston, SC, United States.

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March 2018

Nucleoside-Diphosphate-Kinase of P. gingivalis is Secreted from Epithelial Cells In the Absence of a Leader Sequence Through a Pannexin-1 Interactome.

Sci Rep 2016 11 24;6:37643. Epub 2016 Nov 24.

Department of Oral Health Sciences, College of Dental Medicine, Medical University of South Carolina, Charleston, South Carolina, USA.

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November 2016

Structural Variation of Element and Human Disease.

Genomics Inform 2016 Sep 30;14(3):70-77. Epub 2016 Sep 30.

Division of Pulmonary, Critical Care and Sleep Medicine, Department of Medicine, University of Florida, Gainesville, FL 32610, USA.

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September 2016

Porphyromonas gingivalis attenuates ATP-mediated inflammasome activation and HMGB1 release through expression of a nucleoside-diphosphate kinase.

Microbes Infect 2015 May 27;17(5):369-77. Epub 2015 Mar 27.

Department of Molecular Cell Biology, University of California, Merced, CA 95343, USA; Health Sciences Research Institute, University of California, Merced, CA 95343, USA. Electronic address:

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May 2015

Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome.

PLoS One 2014 2;9(7):e101195. Epub 2014 Jul 2.

Department of Nanobiomedical Science, Dankook University, Cheonan, Republic of Korea; BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan, Republic of Korea; DKU-Theragen institute for NGS analysis (DTiNa), Cheonan, Republic of Korea.

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February 2015

Phylogeny of flavobacteria group isolated from freshwater using multilocus sequencing analysis.

Genomics Inform 2013 Dec 31;11(4):272-6. Epub 2013 Dec 31.

Department of Microbiology, Dankook University, Cheonan 330-714, Korea.

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December 2013

Flavobacterium aquaticum sp. nov., a member of the Bacteroidetes isolated from a freshwater reservoir.

J Microbiol 2013 Jun 26;51(3):283-8. Epub 2013 Apr 26.

Department of Microbiology, Dankook University, Cheonan 330-714, Republic of Korea.

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June 2013

Human-specific HERV-K insertion causes genomic variations in the human genome.

PLoS One 2013 12;8(4):e60605. Epub 2013 Apr 12.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan, Republic of Korea.

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October 2013

Transposable Elements: No More 'Junk DNA'.

Genomics Inform 2012 Dec 31;10(4):226-33. Epub 2012 Dec 31.

Department of Nanobiomedical Science, WCU Research Center, Dankook University, Cheonan 330-714, Korea.

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December 2012

UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes.

Comp Funct Genomics 2012 27;2012:520732. Epub 2012 May 27.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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August 2012

Human Genomic Deletions Generated by SVA-Associated Events.

Comp Funct Genomics 2012 20;2012:807270. Epub 2012 May 20.

Department of Nanobiomedical Science and WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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August 2012

High Levels of Sequence Diversity in the 5' UTRs of Human-Specific L1 Elements.

Comp Funct Genomics 2012 7;2012:129416. Epub 2012 Feb 7.

Department of Nanobiomedical Science & WCU Research Center, Dankook University, Cheonan 330-714, Republic of Korea.

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August 2012

Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons.

PLoS One 2008 29;3(12):e4047. Epub 2008 Dec 29.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA.

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March 2009

L1 recombination-associated deletions generate human genomic variation.

Proc Natl Acad Sci U S A 2008 Dec 26;105(49):19366-71. Epub 2008 Nov 26.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA.

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December 2008

Alu recombination-mediated structural deletions in the chimpanzee genome.

PLoS Genet 2007 Oct 10;3(10):1939-49. Epub 2007 Sep 10.

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, USA.

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October 2007

In search of polymorphic Alu insertions with restricted geographic distributions.

Genomics 2007 Jul 11;90(1):154-8. Epub 2007 May 11.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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July 2007

Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome.

Science 2007 Apr;316(5822):238-40

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-Scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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April 2007

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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April 2007

Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons.

Gene 2007 Apr 16;390(1-2):18-27. Epub 2006 Sep 16.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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April 2007

Human genomic deletions mediated by recombination between Alu elements.

Am J Hum Genet 2006 Jul 3;79(1):41-53. Epub 2006 May 3.

Department of Biological Sciences, Louisiana State University, Baton Rouge, 70803, USA.

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July 2006

Recently integrated Alu retrotransposons are essentially neutral residents of the human genome.

Gene 2006 May 9;373:138-44. Epub 2006 Mar 9.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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May 2006

Imipenem-resistant Achromobacter xylosoxidans carrying blaVIM-2-containing class 1 integron.

Diagn Microbiol Infect Dis 2005 Nov 2;53(3):215-20. Epub 2005 Nov 2.

Department of Laboratory Medicine, College of Medicine, Chungbuk National University, Cheongju, 361-711 Republic of Korea.

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November 2005

Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Nucleic Acids Res 2005 20;33(13):4040-52. Epub 2005 Jul 20.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for BioModular Multi-Scale Systems, Louisiana State University 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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August 2005