Julien Mariethoz

Julien Mariethoz

UNVERIFIED PROFILE

Are you Julien Mariethoz?   Register this Author

Register author
Julien Mariethoz

Julien Mariethoz

Publications by authors named "Julien Mariethoz"

Are you Julien Mariethoz?   Register this Author

18Publications

305Reads

20Profile Views

A Bioinformatics View of Glycan⁻Virus Interactions.

Viruses 2019 04 23;11(4). Epub 2019 Apr 23.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/v11040374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6521074PMC
April 2019

GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical.

J Proteome Res 2019 02 15;18(2):664-677. Epub 2019 Jan 15.

Proteome Informatics Group , SIB Swiss Institute of Bioinformatics , Rue Michel-Servet 1 , CH-1211 Geneva , Switzerland.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/acs.jproteome.8b00766
Publisher Site
http://dx.doi.org/10.1021/acs.jproteome.8b00766DOI Listing
February 2019

A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space.

Glycobiology 2019 01;29(1):36-44

University Lyon, University Claude Bernard Lyon 1, CNRS, INSA Lyon, CPE, Institute of Molecular and Supramolecular Chemistry and Biochemistry, UMR 5246, Villeurbanne Cedex, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/glycob/cwy084DOI Listing
January 2019

SugarSketcher: Quick and Intuitive Online Glycan Drawing.

Molecules 2018 Dec 5;23(12). Epub 2018 Dec 5.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland.

View Article

Download full-text PDF

Source
http://www.mdpi.com/1420-3049/23/12/3206
Publisher Site
http://dx.doi.org/10.3390/molecules23123206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6320881PMC
December 2018

Glycomics@ExPASy: Bridging the Gap.

Mol Cell Proteomics 2018 11 10;17(11):2164-2176. Epub 2018 Aug 10.

From the ‡Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/mcp.RA118.000799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6210229PMC
November 2018

Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopes.

Glycobiology 2018 06;28(6):349-362

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 7 Route de Drize, 1227 Geneva, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/glycob/cwy019DOI Listing
June 2018

Navigating the Glycome Space and Connecting the Glycoproteome.

Methods Mol Biol 2017 ;1558:139-158

Department of Chemistry and Biomolecular Sciences, Research Drive, Building E8C, Macquarie University, North Ryde, Sydney, 2109, NSW, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-6783-4_7DOI Listing
February 2018

Databases and Associated Tools for Glycomics and Glycoproteomics.

Methods Mol Biol 2017 ;1503:235-264

Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Box 440, 405 30, Gothenburg, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-6493-2_18DOI Listing
January 2018

Glycoforest 1.0.

Anal Chem 2017 10 25;89(20):10932-10940. Epub 2017 Sep 25.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics , Geneva, 1211, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.analchem.7b02754DOI Listing
October 2017

GlycoSiteAlign: Glycosite Alignment Based on Glycan Structure.

J Proteome Res 2016 10 2;15(10):3916-3928. Epub 2016 Sep 2.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics , 7 route de Drize, 1227 Geneva, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jproteome.6b00481DOI Listing
October 2016

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search.

PLoS One 2015 14;10(12):e0144578. Epub 2015 Dec 14.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, 1211, Switzerland.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144578PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684231PMC
June 2016

SugarBindDB, a resource of glycan-mediated host-pathogen interactions.

Nucleic Acids Res 2016 Jan 17;44(D1):D1243-50. Epub 2015 Nov 17.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland Department of Computer Science, University of Geneva, Geneva, Switzerland

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv1247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702881PMC
January 2016

MzJava: An open source library for mass spectrometry data processing.

J Proteomics 2015 Nov 30;129:63-70. Epub 2015 Jun 30.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva 1211, Switzerland; Centre Universitaire de Bioinformatique, University of Geneva, Geneva 1211, Switzerland. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jprot.2015.06.013DOI Listing
November 2015

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination.

Bioinformatics 2014 Nov 10;30(21):3131-3. Epub 2014 Jul 10.

Proteome Informatics Group, Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland, Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, National Institute for Bioprocessing Research and Training, GlycoScience Group, Dublin, Ireland, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, 40530 Gothenburg, Sweden and Section of Biology, University of Geneva, 1211 Geneva, Switzerland Proteome Informatics Group, Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland, Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, National Institute for Bioprocessing Research and Training, GlycoScience Group, Dublin, Ireland, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, 40530 Gothenburg, Sweden and Section of Biology, University of Geneva, 1211 Geneva, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4609004PMC
November 2014

UniCarbKB: building a knowledge platform for glycoproteomics.

Nucleic Acids Res 2014 Jan 13;42(Database issue):D215-21. Epub 2013 Nov 13.

Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo, Japan and Section of Biology, Faculty of Sciences, University of Geneva, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkt1128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964942PMC
January 2014