Publications by authors named "Julie Poulain"

94Publications

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the ITS2 region.

PeerJ 2018 23;6:e4816. Epub 2018 May 23.

Red Sea Research Center, Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

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http://dx.doi.org/10.7717/peerj.4816DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5970565PMC
May 2018

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages.

Sci Rep 2018 02 7;8(1):2539. Epub 2018 Feb 7.

Station Biologique de Roscoff, UMR7144, Sorbonne Universités UPMC Université Paris 06 & CNRS, Place Georges Teissier, 29680, Roscoff, France.

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http://dx.doi.org/10.1038/s41598-018-20833-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5803224PMC
February 2018

Neobodonids are dominant kinetoplastids in the global ocean.

Environ Microbiol 2018 02;20(2):878-889

Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic.

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http://dx.doi.org/10.1111/1462-2920.14034DOI Listing
February 2018

New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona.

Mol Ecol 2017 Sep 25;26(17):4467-4482. Epub 2017 Jul 25.

Commissariat à l'Energie Atomique (CEA), Institut de Biologie François Jacob, Genoscope, Evry, France.

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http://dx.doi.org/10.1111/mec.14214DOI Listing
September 2017

Biogeography and diversity of Collodaria (Radiolaria) in the global ocean.

ISME J 2017 06 24;11(6):1331-1344. Epub 2017 Mar 24.

Sorbonne Universités, UPMC Université Paris 06, CNRS, Laboratoire Adaptation et Diversité en Milieu Marin UMR7144, Station Biologique de Roscoff, Roscoff, France.

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http://dx.doi.org/10.1038/ismej.2017.12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437347PMC
June 2017

Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae).

Genome Biol Evol 2016 10 5;8(9):3030-3044. Epub 2016 Oct 5.

UMR CNRS 6553 Ecobio, OSUR (Observatoire des Sciences de l'Univers de Rennes), University of Rennes 1, Rennes Cedex, France

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http://dx.doi.org/10.1093/gbe/evw209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5633685PMC
October 2016

Insights into global diatom distribution and diversity in the world's ocean.

Proc Natl Acad Sci U S A 2016 Mar 29;113(11):E1516-25. Epub 2016 Feb 29.

Institut de Biologie de l'École Normale Supérieure, École Normale Supérieure, Paris Sciences et Lettres Research University, CNRS UMR 8197, INSERM U1024, F-75005 Paris, France;

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http://dx.doi.org/10.1073/pnas.1509523113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4801293PMC
March 2016

Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides.

Plant Physiol 2015 Oct 18;169(2):1254-65. Epub 2015 Aug 18.

Université de Montpellier, F-34095 Montpellier cedex 5, France (P.C.);Institut de Recherche pour le Développement, Laboratoire des Symbioses Tropicales et Méditerranéennes, Unité Mixte de Recherche Institut de Recherche pour le Développement/SupAgro/Institut National de la Recherche Agronomique/Université de Montpellier/Centre de Coopération Internationale en Recherche Agronomique pour le Développement, Campus International de Baillarguet, 34398 Montpellier cedex 5, France (D.G., F.C., L.M., D.P., J.F., C.C., P.N., F.G., J.-F.A., E.G.);Institute for Integrative Biology of the Cell, Unité Mixte de Recherche 9198, Centre National de la Recherche Scientifique/Université Paris-Sud/Commissariat à l'Energie Atomique, 91198 Gif-sur-Yvette, France (I.G., O.P., Q.B., P.M.);Commissariat à l'Energie Atomique, Direction des Sciences du Vivant, Institut de Génomique, Génoscope, 91000 Evry, France (C.D.S., J.P., P.W.); andLaboratoire de Protéomique Fonctionnelle, Institut National de la Recherche Agronomique, Unité de Recherche 1199, 34060 Montpellier, France (V.R., S.H.)

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http://dx.doi.org/10.1104/pp.15.00584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587450PMC
October 2015

Transcriptome analyses to investigate symbiotic relationships between marine protists.

Front Microbiol 2015 17;6:98. Epub 2015 Mar 17.

UMR 7144, Université Pierre et Marie Curie Université Paris 06, Sorbonne Universités, Station Biologique de Roscoff Roscoff, France ; Centre National de la Recherche Scientifique, UMR 7144, Station Biologique de Roscoff Roscoff, France.

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http://dx.doi.org/10.3389/fmicb.2015.00098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4362344PMC
April 2015

Transcriptomic response of Manduca sexta immune tissues to parasitization by the bracovirus associated wasp Cotesia congregata.

Insect Biochem Mol Biol 2015 Jul 10;62:86-99. Epub 2015 Jan 10.

Institut de Recherche sur la Biologie de l'Insecte, UMR CNRS 7261, UFR Sciences et Techniques, Université François-Rabelais, Tours, France.

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http://dx.doi.org/10.1016/j.ibmb.2014.12.008DOI Listing
July 2015

Structural and functional partitioning of bread wheat chromosome 3B.

Science 2014 Jul;345(6194):1249721

Institut National de la Recherche Agronomique (INRA) UMR1095, Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu, 63039 Clermont-Ferrand, France. University Blaise Pascal, UMR1095, Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu, 63039 Clermont-Ferrand, France.

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http://dx.doi.org/10.1126/science.1249721DOI Listing
July 2014

Functional annotation of Cotesia congregata bracovirus: identification of viral genes expressed in parasitized host immune tissues.

J Virol 2014 Aug 28;88(16):8795-812. Epub 2014 May 28.

Institut de Recherche sur la Biologie de l'Insecte, UMR CNRS 7261, UFR Sciences et Techniques, Université François-Rabelais, Tours, France

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http://dx.doi.org/10.1128/JVI.00209-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136248PMC
August 2014

Arsenic hypertolerance in the protist Euglena mutabilis is mediated by specific transporters and functional integrity maintenance mechanisms.

Environ Microbiol 2015 Jun 28;17(6):1941-9. Epub 2014 Apr 28.

Génétique Moléculaire, Génomique et Microbiologie, Département Micro-organismes, Génomes, Environnement, UMR7156 Université de Strasbourg/CNRS, Strasbourg, France.

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http://dx.doi.org/10.1111/1462-2920.12474DOI Listing
June 2015

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Environ Microbiol 2014 Sep 18;16(9):2659-71. Epub 2013 Sep 18.

Department of Marine Biology and Oceanography, Institute of Marine Science (ICM), Spanish National Research Council (CSIC), Passeig Marítim de la Barceloneta, 37-49, Barcelona, ES-08003, Spain.

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http://dx.doi.org/10.1111/1462-2920.12250DOI Listing
September 2014

Capturing the mutational landscape of the beta-lactamase TEM-1.

Proc Natl Acad Sci U S A 2013 Aug 22;110(32):13067-72. Epub 2013 Jul 22.

Institut National de la Santé et de la Recherche Médicale (INSERM), Unité Mixte de Recherche en Santé (UMR-S) 722, F-75018 Paris, France.

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http://dx.doi.org/10.1073/pnas.1215206110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740883PMC
August 2013

Extensive inter- and intraspecific venom variation in closely related parasites targeting the same host: the case of Leptopilina parasitoids of Drosophila.

Insect Biochem Mol Biol 2013 Jul 2;43(7):601-11. Epub 2013 Apr 2.

INRA, Evolution and Specificity of Multitrophic Interactions-ESIM, UMR 1355 "Sophia Agrobiotech Institute"-ISA, Institut National de la Recherche Agronomique, INRA PACA, 400 route des Chappes, Sophia Antipolis 06903, France.

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http://dx.doi.org/10.1016/j.ibmb.2013.03.010DOI Listing
July 2013

RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter.

PLoS One 2012 30;7(8):e44408. Epub 2012 Aug 30.

Unité Mixte de Recherche 1136 'Interactions Arbres/Microorganismes', INRA (Institut National de la Recherche Agronomique)/Université de Lorraine, Centre INRA de Nancy, Champenoux, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0044408PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431362PMC
February 2013

Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis.

Int J Biol Sci 2012 10;8(7):1036-50. Epub 2012 Aug 10.

INRA, UMR-A 1272 Physiologie de l'Insecte : Signalisation et Communication, route de Saint-Cyr, F-78026 Versailles Cedex, France.

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http://dx.doi.org/10.7150/ijbs.4469DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3421235PMC
November 2012

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water.

J Bacteriol 2012 Jun;194(11):3024-5

Unité de Virologie et Immunologie Moléculaires, INRA, Domaine de Vilvert, Jouy-en-Josas, France.

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http://dx.doi.org/10.1128/JB.00420-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370609PMC
June 2012

ESTs library from embryonic stages reveals tubulin and reflectin diversity in Sepia officinalis (Mollusca — Cephalopoda).

Gene 2012 May;498(2):203-11

Muséum National d'Histoire Naturelle (MNHN), Département Milieux et Peuplements Aquatiques (DMPA), UMR Biologie des ORganismes et Ecosystèmes Aquatiques (BOREA), MNHN, CNRS 7208, IRD 207, UPMC. Paris, France.

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http://dx.doi.org/10.1016/j.gene.2012.01.100DOI Listing
May 2012

Genes under positive selection in a model plant pathogenic fungus, Botrytis.

Infect Genet Evol 2012 Jul 3;12(5):987-96. Epub 2012 Mar 3.

Ecologie, Systématique et Evolution, Université Paris-Sud UMR8079, F-91405 Orsay Cedex, France.

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http://dx.doi.org/10.1016/j.meegid.2012.02.012DOI Listing
July 2012

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Authors:
Nevin D Young Frédéric Debellé Giles E D Oldroyd Rene Geurts Steven B Cannon Michael K Udvardi Vagner A Benedito Klaus F X Mayer Jérôme Gouzy Heiko Schoof Yves Van de Peer Sebastian Proost Douglas R Cook Blake C Meyers Manuel Spannagl Foo Cheung Stéphane De Mita Vivek Krishnakumar Heidrun Gundlach Shiguo Zhou Joann Mudge Arvind K Bharti Jeremy D Murray Marina A Naoumkina Benjamin Rosen Kevin A T Silverstein Haibao Tang Stephane Rombauts Patrick X Zhao Peng Zhou Valérie Barbe Philippe Bardou Michael Bechner Arnaud Bellec Anne Berger Hélène Bergès Shelby Bidwell Ton Bisseling Nathalie Choisne Arnaud Couloux Roxanne Denny Shweta Deshpande Xinbin Dai Jeff J Doyle Anne-Marie Dudez Andrew D Farmer Stéphanie Fouteau Carolien Franken Chrystel Gibelin John Gish Steven Goldstein Alvaro J González Pamela J Green Asis Hallab Marijke Hartog Axin Hua Sean J Humphray Dong-Hoon Jeong Yi Jing Anika Jöcker Steve M Kenton Dong-Jin Kim Kathrin Klee Hongshing Lai Chunting Lang Shaoping Lin Simone L Macmil Ghislaine Magdelenat Lucy Matthews Jamison McCorrison Erin L Monaghan Jeong-Hwan Mun Fares Z Najar Christine Nicholson Céline Noirot Majesta O'Bleness Charles R Paule Julie Poulain Florent Prion Baifang Qin Chunmei Qu Ernest F Retzel Claire Riddle Erika Sallet Sylvie Samain Nicolas Samson Iryna Sanders Olivier Saurat Claude Scarpelli Thomas Schiex Béatrice Segurens Andrew J Severin D Janine Sherrier Ruihua Shi Sarah Sims Susan R Singer Senjuti Sinharoy Lieven Sterck Agnès Viollet Bing-Bing Wang Keqin Wang Mingyi Wang Xiaohong Wang Jens Warfsmann Jean Weissenbach Doug D White Jim D White Graham B Wiley Patrick Wincker Yanbo Xing Limei Yang Ziyun Yao Fu Ying Jixian Zhai Liping Zhou Antoine Zuber Jean Dénarié Richard A Dixon Gregory D May David C Schwartz Jane Rogers Francis Quétier Christopher D Town Bruce A Roe

Nature 2011 Nov 16;480(7378):520-4. Epub 2011 Nov 16.

Department of Plant Pathology, University of Minnesota, St Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1038/nature10625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272368PMC
November 2011

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

PLoS Genet 2011 Aug 18;7(8):e1002230. Epub 2011 Aug 18.

Unité de Recherche Génomique - Info, UR1164, INRA, Versailles, France.

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http://dx.doi.org/10.1371/journal.pgen.1002230DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158057PMC
August 2011

The genome of the mesopolyploid crop species Brassica rapa.

Nat Genet 2011 Aug 28;43(10):1035-9. Epub 2011 Aug 28.

Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences (IVF, CAAS), Beijing, China.

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http://dx.doi.org/10.1038/ng.919DOI Listing
August 2011

In silico survey of the mitochondrial protein uptake and maturation systems in the brown alga Ectocarpus siliculosus.

PLoS One 2011 18;6(5):e19540. Epub 2011 May 18.

Université Pierre et Marie Curie, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, Roscoff, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019540PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3097184PMC
September 2011

Enterotypes of the human gut microbiome.

Nature 2011 May 20;473(7346):174-80. Epub 2011 Apr 20.

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://www-huber.embl.de/pub/pdf/Arumugam_Nature_2011.pdf
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http://www.nature.com/doifinder/10.1038/nature09944
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http://dx.doi.org/10.1038/nature09944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3728647PMC
May 2011

The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach.

BMC Genomics 2010 Dec 7;11:693. Epub 2010 Dec 7.

UMR 6035 CNRS, Institut de Recherche sur la Biologie de l'Insecte, Faculté des Sciences et Techniques, Université François-Rabelais, Parc Grandmont, 37200 Tours, France.

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http://dx.doi.org/10.1186/1471-2164-11-693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091792PMC
December 2010

Atlas of gene expression in the mouse kidney: new features of glomerular parietal cells.

Physiol Genomics 2011 Feb 16;43(3):161-73. Epub 2010 Nov 16.

UPMC Univ Paris 06, Univ Paris Descartes and INSERM, UMRS 872, Centre de recherche des Cordeliers, Paris, France.

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http://dx.doi.org/10.1152/physiolgenomics.00093.2010DOI Listing
February 2011

The Ectocarpus genome and the independent evolution of multicellularity in brown algae.

Nature 2010 Jun;465(7298):617-21

UPMC Université Paris 6, The Marine Plants and Biomolecules Laboratory, UMR 7139, Station Biologique de Roscoff, Place Georges Teissier, BP74, 29682 Roscoff Cedex, France.

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http://dx.doi.org/10.1038/nature09016DOI Listing
June 2010

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus.

Genome Res 2010 May 1;20(5):664-74. Epub 2010 Apr 1.

Structural & Genomic Information Laboratory, Centre National de la Recherche Scientifique, UPR2589, Mediterranean Institute of Microbiology IFR88, Aix-Marseille University, Parc Scientifique de Luminy, FR-13288 Marseille, France.

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http://dx.doi.org/10.1101/gr.102582.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860168PMC
May 2010

A role for RNAi in the selective correction of DNA methylation defects.

Science 2009 Mar 29;323(5921):1600-4. Epub 2009 Jan 29.

Unité de Recherche en Génomique Végétale, CNRS UMR 8114, Institut National de la Recherche Argonomique UMR 1165, Université d'Evry Val d'Essonne, 91057 Evry Cedex, France.

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http://dx.doi.org/10.1126/science.1165313DOI Listing
March 2009