Julie C Dunning Hotopp

Julie C Dunning Hotopp

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Julie C Dunning Hotopp

Julie C Dunning Hotopp

Publications by authors named "Julie C Dunning Hotopp"

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Nearly Complete Genome Sequence of Brugia pahangi FR3.

Microbiol Resour Announc 2020 Jul 2;9(27). Epub 2020 Jul 2.

Institute for Genome Science, University of Maryland School of Medicine, Baltimore, Maryland, USA

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http://dx.doi.org/10.1128/MRA.00479-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7330237PMC
July 2020

Complete Genome Sequence of Ana, the Wolbachia Endosymbiont of Drosophila ananassae.

Microbiol Resour Announc 2019 Oct 24;8(43). Epub 2019 Oct 24.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA

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http://dx.doi.org/10.1128/MRA.01136-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813396PMC
October 2019

Future-Proofing Your Genome Assembly for Reproducibility and Clarity.

Microbiol Resour Announc 2019 Sep 5;8(36). Epub 2019 Sep 5.

Department of Microbiology and Plant Pathology and Institute for Integrative Genome Biology, University of California-Riverside, Riverside, California, USA.

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http://dx.doi.org/10.1128/MRA.00954-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728651PMC
September 2019

TwinBLAST: When Two Is Better than One.

Microbiol Resour Announc 2019 Aug 29;8(35). Epub 2019 Aug 29.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/MRA.00842-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715876PMC
August 2019

Using Core Genome Alignments To Assign Bacterial Species.

mSystems 2018 Nov-Dec;3(6). Epub 2018 Dec 4.

Institute for Genome Sciences, University of Maryland Baltimore, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/mSystems.00236-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6280431PMC
December 2018

Comparative genomics of the Erwinia and Enterobacter olive fly endosymbionts.

Sci Rep 2018 10 29;8(1):15936. Epub 2018 Oct 29.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://www.nature.com/articles/s41598-018-33809-w
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http://dx.doi.org/10.1038/s41598-018-33809-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205999PMC
October 2018

Draft Genome Sequence of , a Dominant Endosymbiont of Olive Flies.

Microbiol Resour Announc 2018 Sep 13;7(10). Epub 2018 Sep 13.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/MRA.01067-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256602PMC
September 2018

Draft Genome Sequence of Enterobacter sp. Strain OLF, a Colonizer of Olive Flies.

Microbiol Resour Announc 2018 Sep 6;7(9). Epub 2018 Sep 6.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/MRA.01068-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256528PMC
September 2018

Grafting or pruning in the animal tree: lateral gene transfer and gene loss?

BMC Genomics 2018 Jun 18;19(1):470. Epub 2018 Jun 18.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://dx.doi.org/10.1186/s12864-018-4832-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6006793PMC
June 2018

-Selected Compensatory Mutations Restore the Fitness Cost of Mosaic Alleles That Confer Ceftriaxone Resistance in .

mBio 2018 04 3;9(2). Epub 2018 Apr 3.

Department of Microbiology and Immunology, F. Edward Hébert School of Medicine, Uniformed Services University, Bethesda, Maryland, USA

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http://dx.doi.org/10.1128/mBio.01905-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885032PMC
April 2018

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells.

Microb Genom 2018 02 18;4(2). Epub 2018 Jan 18.

1​Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1099/mgen.0.000154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857381PMC
February 2018

The Complexities and Nuances of Analyzing the Genome of and Its Endosymbiont.

G3 (Bethesda) 2018 01 4;8(1):373-374. Epub 2018 Jan 4.

Molecular Evolution, Department of Cell and Molecular Biology, Uppsala University, 75124 Sweden.

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http://g3journal.org/lookup/doi/10.1534/g3.117.300164
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http://dx.doi.org/10.1534/g3.117.300164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765364PMC
January 2018

Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb.

Pathog Dis 2017 12;75(9)

Institute for Genome Sciences, University of Maryland, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1093/femspd/ftx115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827699PMC
December 2017

Lateral gene transfer between prokaryotes and eukaryotes.

Exp Cell Res 2017 09 9;358(2):421-426. Epub 2017 Feb 9.

Institute for Genome Science, University of Maryland School of Medicine, Baltimore, MD 21201, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA; Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD 21201, USA. Electronic address:

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http://dx.doi.org/10.1016/j.yexcr.2017.02.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5550378PMC
September 2017

Targeted Enrichment and Sequencing of Recent Endosymbiont-Host Lateral Gene Transfers.

Sci Rep 2017 04 12;7(1):857. Epub 2017 Apr 12.

Genome Biology Division, New England Biolabs, Inc., 240 County Road, Ipswich, MA, 01938, United States.

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http://dx.doi.org/10.1038/s41598-017-00814-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5429809PMC
April 2017

Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples.

Sci Rep 2016 10 7;6:34850. Epub 2016 Oct 7.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, United States of America.

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http://dx.doi.org/10.1038/srep34850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054355PMC
October 2016

Modeling the integration of bacterial rRNA fragments into the human cancer genome.

BMC Bioinformatics 2016 Mar 21;17:134. Epub 2016 Mar 21.

Institute for Genome Science, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.

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http://dx.doi.org/10.1186/s12859-016-0982-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4802584PMC
March 2016

Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae.

BMC Genomics 2014 Dec 12;15:1097. Epub 2014 Dec 12.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1186/1471-2164-15-1097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4299567PMC
December 2014

Biology wars: the eukaryotes strike back.

Cell Host Microbe 2014 Dec;16(6):701-3

Institute for Genome Sciences, School of Medicine, University of Maryland, Baltimore, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1016/j.chom.2014.11.014DOI Listing
December 2014

Mobile elements and viral integrations prompt considerations for bacterial DNA integration as a novel carcinogen.

Cancer Lett 2014 Oct 21;352(2):137-44. Epub 2014 Jun 21.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA; Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.canlet.2014.05.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134975PMC
October 2014

Brood ball-mediated transmission of microbiome members in the dung beetle, Onthophagus taurus (Coleoptera: Scarabaeidae).

PLoS One 2013 1;8(11):e79061. Epub 2013 Nov 1.

Towson University, Department of Biological Sciences, Baltimore, Maryland, United States of America ; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0079061PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3815100PMC
August 2014

A review of bacteria-animal lateral gene transfer may inform our understanding of diseases like cancer.

PLoS Genet 2013 17;9(10):e1003877. Epub 2013 Oct 17.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.

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https://dx.doi.org/10.1371/journal.pgen.1003877
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http://dx.doi.org/10.1371/journal.pgen.1003877DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3798261PMC
March 2014

Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples.

PLoS Comput Biol 2013 20;9(6):e1003107. Epub 2013 Jun 20.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688693PMC
January 2014

Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States.

PLoS One 2012 27;7(4):e35699. Epub 2012 Apr 27.

Infectious Diseases Epidemiology Research Unit, School of Medicine and Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvanian, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035699PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338715PMC
September 2012

Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer.

BMC Res Notes 2012 May 14;5:230. Epub 2012 May 14.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1186/1756-0500-5-230DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424148PMC
May 2012

Using Sybil for interactive comparative genomics of microbes on the web.

Bioinformatics 2012 Jan 24;28(2):160-6. Epub 2011 Nov 24.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr652DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3259440PMC
January 2012

Whole-genome association study on tissue tropism phenotypes in group A Streptococcus.

J Bacteriol 2011 Dec 23;193(23):6651-63. Epub 2011 Sep 23.

New York Medical College, Department of Microbiology & Immunology, Valhalla, NY 10595, USA.

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http://dx.doi.org/10.1128/JB.05263-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3232895PMC
December 2011

Improving pan-genome annotation using whole genome multiple alignment.

BMC Bioinformatics 2011 Jun 30;12:272. Epub 2011 Jun 30.

Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA.

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http://dx.doi.org/10.1186/1471-2105-12-272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142524PMC
June 2011

Horizontal gene transfer between bacteria and animals.

Trends Genet 2011 Apr 18;27(4):157-63. Epub 2011 Feb 18.

Institute for Genome Science, Department of Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1016/j.tig.2011.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068243PMC
April 2011

Extensive genomic diversity of closely related Wolbachia strains.

Microbiology 2009 Jul 23;155(Pt 7):2211-2222. Epub 2009 Apr 23.

Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland Baltimore, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1099/mic.0.027581-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2888116PMC
July 2009

Multilocus sequence typing system for the endosymbiont Wolbachia pipientis.

Appl Environ Microbiol 2006 Nov 25;72(11):7098-110. Epub 2006 Aug 25.

Department of Biology, University of California, 900 University Avenue, Riverside, CA 92521, USA.

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http://dx.doi.org/10.1128/AEM.00731-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1636189PMC
November 2006

Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.

Genome Biol 2005 24;6(7):402. Epub 2005 Jun 24.

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/gb-2005-6-7-402DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1175986PMC
June 2006

Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.

Genome Biol 2005 22;6(3):R23. Epub 2005 Feb 22.

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/gb-2005-6-3-r23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1088942PMC
March 2006

Intrinsic tryptophan fluorescence as a probe of metal and alpha-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase.

J Inorg Biochem 2003 Jan;93(1-2):66-70

Department of Microbiology and Molecular Genetics, 160 Giltner Hall, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1016/s0162-0134(02)00436-1DOI Listing
January 2003

Probing the 2,4-dichlorophenoxyacetate/alpha-ketoglutarate dioxygenase substrate-binding site by site-directed mutagenesis and mechanism-based inactivation.

Biochemistry 2002 Aug;41(31):9787-94

Department of Microbiology and Molecular Genetics, 6193 Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA.

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http://dx.doi.org/10.1021/bi026057aDOI Listing
August 2002

X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates.

Biochemistry 2002 Apr;41(16):5185-92

Dyson Perrins Laboratory, Oxford University, South Parks Road, Oxford, England, OX1 3QY, and Departments of Microbiology & Molecular Genetics and Biochemistry & Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1011.

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http://dx.doi.org/10.1021/bi016014eDOI Listing
April 2002