Juliann Shih

Juliann Shih

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Juliann Shih

Juliann Shih

Publications by authors named "Juliann Shih"

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18Publications

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Next-generation characterization of the Cancer Cell Line Encyclopedia.

Authors:
Mahmoud Ghandi Franklin W Huang Judit Jané-Valbuena Gregory V Kryukov Christopher C Lo E Robert McDonald Jordi Barretina Ellen T Gelfand Craig M Bielski Haoxin Li Kevin Hu Alexander Y Andreev-Drakhlin Jaegil Kim Julian M Hess Brian J Haas François Aguet Barbara A Weir Michael V Rothberg Brenton R Paolella Michael S Lawrence Rehan Akbani Yiling Lu Hong L Tiv Prafulla C Gokhale Antoine de Weck Ali Amin Mansour Coyin Oh Juliann Shih Kevin Hadi Yanay Rosen Jonathan Bistline Kavitha Venkatesan Anupama Reddy Dmitriy Sonkin Manway Liu Joseph Lehar Joshua M Korn Dale A Porter Michael D Jones Javad Golji Giordano Caponigro Jordan E Taylor Caitlin M Dunning Amanda L Creech Allison C Warren James M McFarland Mahdi Zamanighomi Audrey Kauffmann Nicolas Stransky Marcin Imielinski Yosef E Maruvka Andrew D Cherniack Aviad Tsherniak Francisca Vazquez Jacob D Jaffe Andrew A Lane David M Weinstock Cory M Johannessen Michael P Morrissey Frank Stegmeier Robert Schlegel William C Hahn Gad Getz Gordon B Mills Jesse S Boehm Todd R Golub Levi A Garraway William R Sellers

Nature 2019 05 8;569(7757):503-508. Epub 2019 May 8.

Novartis Institutes for Biomedical Research, Cambridge, MA, USA.

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http://www.nature.com/articles/s41586-019-1186-3
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http://dx.doi.org/10.1038/s41586-019-1186-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6697103PMC
May 2019

Integrative Molecular Characterization of Malignant Pleural Mesothelioma.

Authors:
Julija Hmeljak Francisco Sanchez-Vega Katherine A Hoadley Juliann Shih Chip Stewart David Heiman Patrick Tarpey Ludmila Danilova Esther Drill Ewan A Gibb Reanne Bowlby Rupa Kanchi Hatice U Osmanbeyoglu Yoshitaka Sekido Jumpei Takeshita Yulia Newton Kiley Graim Manaswi Gupta Carl M Gay Lixia Diao David L Gibbs Vesteinn Thorsson Lisa Iype Havish Kantheti David T Severson Gloria Ravegnini Patrice Desmeules Achim A Jungbluth William D Travis Sanja Dacic Lucian R Chirieac Françoise Galateau-Sallé Junya Fujimoto Aliya N Husain Henrique C Silveira Valerie W Rusch Robert C Rintoul Harvey Pass Hedy Kindler Marjorie G Zauderer David J Kwiatkowski Raphael Bueno Anne S Tsao Jenette Creaney Tara Lichtenberg Kristen Leraas Jay Bowen Ina Felau Jean Claude Zenklusen Rehan Akbani Andrew D Cherniack Lauren A Byers Michael S Noble Jonathan A Fletcher A Gordon Robertson Ronglai Shen Hiroyuki Aburatani Bruce W Robinson Peter Campbell Marc Ladanyi

Cancer Discov 2018 12 15;8(12):1548-1565. Epub 2018 Oct 15.

Department of Pathology and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York.

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http://cancerdiscovery.aacrjournals.org/lookup/doi/10.1158/2
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http://dx.doi.org/10.1158/2159-8290.CD-18-0804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6310008PMC
December 2018

Genome-scale analysis identifies paralog lethality as a vulnerability of chromosome 1p loss in cancer.

Authors:
Srinivas R Viswanathan Marina F Nogueira Colin G Buss John M Krill-Burger Mathias J Wawer Edyta Malolepsza Ashton C Berger Peter S Choi Juliann Shih Alison M Taylor Benjamin Tanenbaum Chandra Sekhar Pedamallu Andrew D Cherniack Pablo Tamayo Craig A Strathdee Kasper Lage Steven A Carr Monica Schenone Sangeeta N Bhatia Francisca Vazquez Aviad Tsherniak William C Hahn Matthew Meyerson

Nat Genet 2018 07 28;50(7):937-943. Epub 2018 Jun 28.

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.

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http://dx.doi.org/10.1038/s41588-018-0155-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143899PMC
July 2018

Integrated Molecular Characterization of Testicular Germ Cell Tumors.

Authors:
Hui Shen Juliann Shih Daniel P Hollern Linghua Wang Reanne Bowlby Satish K Tickoo Vésteinn Thorsson Andrew J Mungall Yulia Newton Apurva M Hegde Joshua Armenia Francisco Sánchez-Vega John Pluta Louise C Pyle Rohit Mehra Victor E Reuter Guilherme Godoy Jeffrey Jones Carl S Shelley Darren R Feldman Daniel O Vidal Davor Lessel Tomislav Kulis Flavio M Cárcano Kristen M Leraas Tara M Lichtenberg Denise Brooks Andrew D Cherniack Juok Cho David I Heiman Katayoon Kasaian Minwei Liu Michael S Noble Liu Xi Hailei Zhang Wanding Zhou Jean C ZenKlusen Carolyn M Hutter Ina Felau Jiashan Zhang Nikolaus Schultz Gad Getz Matthew Meyerson Joshua M Stuart Rehan Akbani David A Wheeler Peter W Laird Katherine L Nathanson Victoria K Cortessis Katherine A Hoadley

Cell Rep 2018 06;23(11):3392-3406

Department of Genetics, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.05.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6075738PMC
June 2018

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas.

Authors:
Joshua D Campbell Christina Yau Reanne Bowlby Yuexin Liu Kevin Brennan Huihui Fan Alison M Taylor Chen Wang Vonn Walter Rehan Akbani Lauren Averett Byers Chad J Creighton Cristian Coarfa Juliann Shih Andrew D Cherniack Olivier Gevaert Marcos Prunello Hui Shen Pavana Anur Jianhong Chen Hui Cheng D Neil Hayes Susan Bullman Chandra Sekhar Pedamallu Akinyemi I Ojesina Sara Sadeghi Karen L Mungall A Gordon Robertson Christopher Benz Andre Schultz Rupa S Kanchi Carl M Gay Apurva Hegde Lixia Diao Jing Wang Wencai Ma Pavel Sumazin Hua-Sheng Chiu Ting-Wen Chen Preethi Gunaratne Larry Donehower Janet S Rader Rosemary Zuna Hikmat Al-Ahmadie Alexander J Lazar Elsa R Flores Kenneth Y Tsai Jane H Zhou Anil K Rustgi Esther Drill Ronglei Shen Christopher K Wong Joshua M Stuart Peter W Laird Katherine A Hoadley John N Weinstein Myron Peto Curtis R Pickering Zhong Chen Carter Van Waes

Cell Rep 2018 04;23(1):194-212.e6

Head and Neck Surgery Branch, National Institute on Deafness and Other Communication Disorders, NIH, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.03.063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002769PMC
April 2018

Genomic and Functional Approaches to Understanding Cancer Aneuploidy.

Authors:
Alison M Taylor Juliann Shih Gavin Ha Galen F Gao Xiaoyang Zhang Ashton C Berger Steven E Schumacher Chen Wang Hai Hu Jianfang Liu Alexander J Lazar Andrew D Cherniack Rameen Beroukhim Matthew Meyerson

Cancer Cell 2018 04 2;33(4):676-689.e3. Epub 2018 Apr 2.

Department of Medical Oncology, Dana-Farber Cancer Institute, 450 Brookline Avenue, Boston, MA 02215, USA; Cancer Program, Broad Institute, 415 Main Street, Cambridge, MA 02142, USA; Department of Pathology, Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2018.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028190PMC
April 2018

Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor.

Authors:
Xiaoyang Zhang Peter S Choi Joshua M Francis Galen F Gao Joshua D Campbell Aruna Ramachandran Yoichiro Mitsuishi Gavin Ha Juliann Shih Francisca Vazquez Aviad Tsherniak Alison M Taylor Jin Zhou Zhong Wu Ashton C Berger Marios Giannakis William C Hahn Andrew D Cherniack Matthew Meyerson

Cancer Discov 2018 01 29;8(1):108-125. Epub 2017 Sep 29.

Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.

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http://dx.doi.org/10.1158/2159-8290.CD-17-0532DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5760289PMC
January 2018

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.

Authors:
A Gordon Robertson Juliann Shih Christina Yau Ewan A Gibb Junna Oba Karen L Mungall Julian M Hess Vladislav Uzunangelov Vonn Walter Ludmila Danilova Tara M Lichtenberg Melanie Kucherlapati Patrick K Kimes Ming Tang Alexander Penson Ozgun Babur Rehan Akbani Christopher A Bristow Katherine A Hoadley Lisa Iype Matthew T Chang Andrew D Cherniack Christopher Benz Gordon B Mills Roel G W Verhaak Klaus G Griewank Ina Felau Jean C Zenklusen Jeffrey E Gershenwald Lynn Schoenfield Alexander J Lazar Mohamed H Abdel-Rahman Sergio Roman-Roman Marc-Henri Stern Colleen M Cebulla Michelle D Williams Martine J Jager Sarah E Coupland Bita Esmaeli Cyriac Kandoth Scott E Woodman

Cancer Cell 2018 01;33(1):151

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http://dx.doi.org/10.1016/j.ccell.2017.12.013DOI Listing
January 2018

Genomic Activation of Reveals a Candidate Therapeutic Axis in Bladder Cancer.

Authors:
Jonathan T Goldstein Ashton C Berger Juliann Shih Fujiko F Duke Laura Furst David J Kwiatkowski Andrew D Cherniack Matthew Meyerson Craig A Strathdee

Cancer Res 2017 12 18;77(24):6987-6998. Epub 2017 Sep 18.

The Broad Institute of MIT and Harvard, Cambridge, Massachusetts.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-1701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5835321PMC
December 2017

Patient-derived xenografts undergo mouse-specific tumor evolution.

Authors:
Uri Ben-David Gavin Ha Yuen-Yi Tseng Noah F Greenwald Coyin Oh Juliann Shih James M McFarland Bang Wong Jesse S Boehm Rameen Beroukhim Todd R Golub

Nat Genet 2017 Nov 9;49(11):1567-1575. Epub 2017 Oct 9.

Cancer Program, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.3967DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5659952PMC
November 2017

Sporadic Early-Onset Diffuse Gastric Cancers Have High Frequency of Somatic CDH1 Alterations, but Low Frequency of Somatic RHOA Mutations Compared With Late-Onset Cancers.

Authors:
Soo Young Cho Jun Won Park Yang Liu Young Soo Park Ju Hee Kim Hanna Yang Hyejin Um Woo Ri Ko Byung Il Lee Sun Young Kwon Seung Wan Ryu Chae Hwa Kwon Do Youn Park Jae-Hyuk Lee Sang Il Lee Kyu Sang Song Hoon Hur Sang-Uk Han Heekyung Chang Su-Jin Kim Byung-Sik Kim Jeong-Hwan Yook Moon-Won Yoo Beom-Su Kim In-Seob Lee Myeong-Cherl Kook Nina Thiessen An He Chip Stewart Andrew Dunford Jaegil Kim Juliann Shih Gordon Saksena Andrew D Cherniack Steven Schumacher Amaro-Taylor Weiner Mara Rosenberg Gad Getz Eun Gyeong Yang Min-Hee Ryu Adam J Bass Hark Kyun Kim

Gastroenterology 2017 08 15;153(2):536-549.e26. Epub 2017 May 15.

National Cancer Center, Goyang, Gyeonggi, Republic of Korea; National Cancer Center Graduate School of Cancer Science and Policy, Goyang, Gyeonggi, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2017.05.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6863080PMC
August 2017

Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.

Authors:
A Gordon Robertson Juliann Shih Christina Yau Ewan A Gibb Junna Oba Karen L Mungall Julian M Hess Vladislav Uzunangelov Vonn Walter Ludmila Danilova Tara M Lichtenberg Melanie Kucherlapati Patrick K Kimes Ming Tang Alexander Penson Ozgun Babur Rehan Akbani Christopher A Bristow Katherine A Hoadley Lisa Iype Matthew T Chang Andrew D Cherniack Christopher Benz Gordon B Mills Roel G W Verhaak Klaus G Griewank Ina Felau Jean C Zenklusen Jeffrey E Gershenwald Lynn Schoenfield Alexander J Lazar Mohamed H Abdel-Rahman Sergio Roman-Roman Marc-Henri Stern Colleen M Cebulla Michelle D Williams Martine J Jager Sarah E Coupland Bita Esmaeli Cyriac Kandoth Scott E Woodman

Cancer Cell 2017 08;32(2):204-220.e15

Department of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2017.07.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619925PMC
August 2017

The genomic landscape of tuberous sclerosis complex.

Authors:
Katie R Martin Wanding Zhou Megan J Bowman Juliann Shih Kit Sing Au Kristin E Dittenhafer-Reed Kellie A Sisson Julie Koeman Daniel J Weisenberger Sandra L Cottingham Steven T DeRoos Orrin Devinsky Mary E Winn Andrew D Cherniack Hui Shen Hope Northrup Darcy A Krueger Jeffrey P MacKeigan

Nat Commun 2017 06 15;8:15816. Epub 2017 Jun 15.

Center for Cancer and Cell Biology, Van Andel Research Institute, 333 Bostwick Avenue NE, Grand Rapids, Michigan 49503, USA.

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http://dx.doi.org/10.1038/ncomms15816DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5481739PMC
June 2017

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:
Farshad Farshidfar Siyuan Zheng Marie-Claude Gingras Yulia Newton Juliann Shih A Gordon Robertson Toshinori Hinoue Katherine A Hoadley Ewan A Gibb Jason Roszik Kyle R Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I Ojesina Julian M Hess J Todd Auman Suhn K Rhie Reanne Bowlby Mitesh J Borad Andrew X Zhu Josh M Stuart Chris Sander Rehan Akbani Andrew D Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael S Torbenson David E Kleiner Peter W Laird David A Wheeler Autumn J McRee Oliver F Bathe Jesper B Andersen Nabeel Bardeesy Lewis R Roberts Lawrence N Kwong

Cell Rep 2017 06;19(13):2878-2880

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http://www.cell.com/cell-reports/pdf/S2211-1247(17)30214-0.p
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http://linkinghub.elsevier.com/retrieve/pii/S221112471730787
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http://dx.doi.org/10.1016/j.celrep.2017.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6141445PMC
June 2017

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Authors:
Farshad Farshidfar Siyuan Zheng Marie-Claude Gingras Yulia Newton Juliann Shih A Gordon Robertson Toshinori Hinoue Katherine A Hoadley Ewan A Gibb Jason Roszik Kyle R Covington Chia-Chin Wu Eve Shinbrot Nicolas Stransky Apurva Hegde Ju Dong Yang Ed Reznik Sara Sadeghi Chandra Sekhar Pedamallu Akinyemi I Ojesina Julian M Hess J Todd Auman Suhn K Rhie Reanne Bowlby Mitesh J Borad Andrew X Zhu Josh M Stuart Chris Sander Rehan Akbani Andrew D Cherniack Vikram Deshpande Taofic Mounajjed Wai Chin Foo Michael S Torbenson David E Kleiner Peter W Laird David A Wheeler Autumn J McRee Oliver F Bathe Jesper B Andersen Nabeel Bardeesy Lewis R Roberts Lawrence N Kwong

Cell Rep 2017 03;18(11):2780-2794

Departments of Genomic Medicine, Melanoma Medical Oncology, Bioinformatics and Computational Biology, Pathology, and Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.02.033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5493145PMC
March 2017

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.

Authors:
Siyuan Zheng Andrew D Cherniack Ninad Dewal Richard A Moffitt Ludmila Danilova Bradley A Murray Antonio M Lerario Tobias Else Theo A Knijnenburg Giovanni Ciriello Seungchan Kim Guillaume Assie Olena Morozova Rehan Akbani Juliann Shih Katherine A Hoadley Toni K Choueiri Jens Waldmann Ozgur Mete A Gordon Robertson Hsin-Ta Wu Benjamin J Raphael Lina Shao Matthew Meyerson Michael J Demeure Felix Beuschlein Anthony J Gill Stan B Sidhu Madson Q Almeida Maria C B V Fragoso Leslie M Cope Electron Kebebew Mouhammed A Habra Timothy G Whitsett Kimberly J Bussey William E Rainey Sylvia L Asa Jérôme Bertherat Martin Fassnacht David A Wheeler Gary D Hammer Thomas J Giordano Roel G W Verhaak

Cancer Cell 2016 08 8;30(2):363. Epub 2016 Aug 8.

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http://dx.doi.org/10.1016/j.ccell.2016.07.013DOI Listing
August 2016

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.

Authors:
Siyuan Zheng Andrew D Cherniack Ninad Dewal Richard A Moffitt Ludmila Danilova Bradley A Murray Antonio M Lerario Tobias Else Theo A Knijnenburg Giovanni Ciriello Seungchan Kim Guillaume Assie Olena Morozova Rehan Akbani Juliann Shih Katherine A Hoadley Toni K Choueiri Jens Waldmann Ozgur Mete A Gordon Robertson Hsin-Ta Wu Benjamin J Raphael Lina Shao Matthew Meyerson Michael J Demeure Felix Beuschlein Anthony J Gill Stan B Sidhu Madson Q Almeida Maria C B V Fragoso Leslie M Cope Electron Kebebew Mouhammed A Habra Timothy G Whitsett Kimberly J Bussey William E Rainey Sylvia L Asa Jérôme Bertherat Martin Fassnacht David A Wheeler Gary D Hammer Thomas J Giordano Roel G W Verhaak

Cancer Cell 2016 05;29(5):723-736

Departments of Genomic Medicine, Bioinformatics, and Computational Biology, Endocrine Neoplasia and Hormonal Disorders, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2016.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4864952PMC
May 2016

Comparison of inter- and intraspecies variation in humans and fruit flies.

Authors:
Juliann Shih Russ Hodge Miguel A Andrade-Navarro

Genom Data 2015 Mar 22;3:49-54. Epub 2014 Nov 22.

Max Delbrück Center for Molecular Medicine, Germany ; Faculty of Biology, Johannes-Gutenberg University of Mainz, Mainz, Germany ; Institute of Molecular Biology, Mainz, Germany.

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https://linkinghub.elsevier.com/retrieve/pii/S22135960140012
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http://dx.doi.org/10.1016/j.gdata.2014.11.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4536057PMC
March 2015