Julian Parkhill

Julian Parkhill

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Julian Parkhill

Julian Parkhill

Publications by authors named "Julian Parkhill"

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Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory.

J Antimicrob Chemother 2019 Aug;74(8):2153-2156

Department of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK.

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http://dx.doi.org/10.1093/jac/dkz170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6640301PMC
August 2019

Human placenta has no microbiome but can contain potential pathogens.

Nature 2019 Aug 31;572(7769):329-334. Epub 2019 Jul 31.

Department of Obstetrics and Gynaecology, University of Cambridge, National Institute for Health Research Biomedical Research Centre, Cambridge, UK.

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http://dx.doi.org/10.1038/s41586-019-1451-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6697540PMC
August 2019

Draft genome sequence of a multidrug-resistant caprine isolate of Staphylococcus cohnii subsp. urealyticus from Tanzania encoding ermB, tet(K), dfrG, fusF and fosD.

J Glob Antimicrob Resist 2019 Jul 16;18:163-165. Epub 2019 Jul 16.

Royal (Dick) School of Veterinary Studies and Roslin Institute, University of Edinburgh, Easter Bush Campus, Roslin, UK. Electronic address:

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http://dx.doi.org/10.1016/j.jgar.2019.07.006DOI Listing
July 2019

The speciation and hybridization history of the genus Salmonella.

Microb Genom 2019 Jul 26. Epub 2019 Jul 26.

8Institut Pasteur, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France.

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http://dx.doi.org/10.1099/mgen.0.000284DOI Listing
July 2019

The impact of antimicrobials on gonococcal evolution.

Nat Microbiol 2019 Jul 29. Epub 2019 Jul 29.

Pathogen Genomics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.

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http://dx.doi.org/10.1038/s41564-019-0501-yDOI Listing
July 2019

Genome-wide epistasis and co-selection study using mutual information.

Nucleic Acids Res 2019 Jul 30. Epub 2019 Jul 30.

Department of Mathematics and Statistics, Helsinki Institute for Information Technology (HIIT), Faculty of Science, University of Helsinki, FI-00014 Helsinki, Finland.

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http://dx.doi.org/10.1093/nar/gkz656DOI Listing
July 2019

Complete Whole-Genome Sequence of Haemophilus haemolyticus NCTC 10839.

Microbiol Resour Announc 2019 Jun 20;8(25). Epub 2019 Jun 20.

Culture Collections, Public Health England, London, United Kingdom.

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http://dx.doi.org/10.1128/MRA.00232-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6588363PMC
June 2019

O-Antigen-Dependent Colicin Insensitivity of Uropathogenic Escherichia coli.

J Bacteriol 2019 Feb 28;201(4). Epub 2019 Jan 28.

Department of Biochemistry, University of Oxford, Oxford, United Kingdom

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http://dx.doi.org/10.1128/JB.00545-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6351738PMC
February 2019

Mutations in the MAB_2299c TetR Regulator Confer Cross-Resistance to Clofazimine and Bedaquiline in .

Antimicrob Agents Chemother 2019 Jan 21;63(1). Epub 2018 Dec 21.

Institut de Recherche en Infectiologie de Montpellier (IRIM), Université de Montpellier, CNRS UMR 9004, Montpellier, France

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http://dx.doi.org/10.1128/AAC.01316-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6325171PMC
January 2019

Separating Bacteria by Capsule Amount Using a Discontinuous Density Gradient.

J Vis Exp 2019 Jan 7(143). Epub 2019 Jan 7.

Wellcome Sanger Institute, Wellcome Genome Campus; Department of Medicine, University of Cambridge;

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http://dx.doi.org/10.3791/58679DOI Listing
January 2019

The Capsule Regulatory Network of Defined by density-TraDISort.

MBio 2018 11 20;9(6). Epub 2018 Nov 20.

Wellcome Sanger Institute, Hinxton, Cambridgeshire, United Kingdom

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http://dx.doi.org/10.1128/mBio.01863-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247091PMC
November 2018

Changing the paradigm for hospital outbreak detection by leading with genomic surveillance of nosocomial pathogens.

Microbiology 2018 10 27;164(10):1213-1219. Epub 2018 Jul 27.

4​Clinical Microbiology & Public Health Laboratory, Cambridge University Hospitals NHS Foundation Trust, Addenbrooke's Hospital, Box 236 Hills Road, Cambridge CB2 0QW, UK.

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http://dx.doi.org/10.1099/mic.0.000700DOI Listing
October 2018

Comparative genomics of Czech vaccine strains of Bordetella pertussis.

Pathog Dis 2018 10 1;76(7). Epub 2018 Oct 1.

Institute of Microbiology v.v.i., Laboratory of post-transcriptional control of gene expression, 14220 Prague, Czech Republic.

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https://academic.oup.com/femspd/article/doi/10.1093/femspd/f
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http://dx.doi.org/10.1093/femspd/fty071DOI Listing
October 2018

Correction to: Detecting eukaryotic microbiota with single-cell sensitivity in human tissue.

Microbiome 2018 10 20;6(1):188. Epub 2018 Oct 20.

Department of Obstetrics and Gynaecology, University of Cambridge, National Institute for Health Research Cambridge Biomedical Research Centre, Cambridge, UK.

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http://dx.doi.org/10.1186/s40168-018-0576-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6195996PMC
October 2018

Arginine-deprivation-induced oxidative damage sterilizes .

Proc Natl Acad Sci U S A 2018 09 24;115(39):9779-9784. Epub 2018 Aug 24.

Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461;

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http://dx.doi.org/10.1073/pnas.1808874115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6166831PMC
September 2018

Detecting eukaryotic microbiota with single-cell sensitivity in human tissue.

Microbiome 2018 09 1;6(1):151. Epub 2018 Sep 1.

Department of Obstetrics and Gynaecology, University of Cambridge, National Institute for Health Research Cambridge Biomedical Research Centre, Cambridge, UK.

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https://microbiomejournal.biomedcentral.com/articles/10.1186
Publisher Site
http://dx.doi.org/10.1186/s40168-018-0529-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6119588PMC
September 2018

Are commercial providers a viable option for clinical bacterial sequencing?

Microb Genom 2018 04 5;4(4). Epub 2018 Apr 5.

1​Department of Medicine, University of Cambridge, Addenbrooke's Hospital, Hills Road, Cambridge CB2 0QQ, UK.

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http://dx.doi.org/10.1099/mgen.0.000173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5989584PMC
April 2018

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.

Wellcome Open Res 2018 23;3:33. Epub 2018 Mar 23.

Infection Genomics, Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.

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http://dx.doi.org/10.12688/wellcomeopenres.14265.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5930550PMC
March 2018

Gut microbiota trajectory in early life may predict development of celiac disease.

Microbiome 2018 02 20;6(1):36. Epub 2018 Feb 20.

Microbial Ecology, Nutrition and Health Research Unit, Institute of Agrochemistry and Food Technology, National Research Council (IATA-CSIC), C/Catedrático Agustín Escardino, 7. 46980, Paterna, Valencia, Spain.

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http://dx.doi.org/10.1186/s40168-018-0415-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819212PMC
February 2018

Streptococcus bovimastitidis sp. nov., isolated from a dairy cow with mastitis.

Int J Syst Evol Microbiol 2018 Jan 3;68(1):21-27. Epub 2017 Nov 3.

1​Department of Veterinary Medicine, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1099/ijsem.0.002321DOI Listing
January 2018

A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children.

PLoS Negl Trop Dis 2017 Oct 2;11(10):e0005975. Epub 2017 Oct 2.

Shoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand.

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http://dx.doi.org/10.1371/journal.pntd.0005975DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5638608PMC
October 2017

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads.

Microb Genom 2017 10 4;3(10):e000131. Epub 2017 Sep 4.

1​Infection Genomics, Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.

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http://dx.doi.org/10.1099/mgen.0.000131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5695208PMC
October 2017

Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand.

Genome Med 2017 09 6;9(1):81. Epub 2017 Sep 6.

Department of Microbiology and Immunology, Faculty of Tropical Medicine, Mahidol University, 420/6 Rajvithi Road, Bangkok, 10400, Thailand.

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http://dx.doi.org/10.1186/s13073-017-0471-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5588602PMC
September 2017

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England.

Sci Rep 2017 08 7;7(1):7406. Epub 2017 Aug 7.

Department of Medicine, University of Cambridge, Box 157 Addenbrooke's Hospital, Hills Road, Cambridge, CB2 0QQ, United Kingdom.

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http://dx.doi.org/10.1038/s41598-017-07662-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5547075PMC
August 2017