Julian Avila-Pacheco

Julian Avila-Pacheco

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Julian Avila-Pacheco

Julian Avila-Pacheco

Publications by authors named "Julian Avila-Pacheco"

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9Publications

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Meta-omics analysis of elite athletes identifies a performance-enhancing microbe that functions via lactate metabolism.

Authors:
Jonathan Scheiman Jacob M Luber Theodore A Chavkin Tara MacDonald Angela Tung Loc-Duyen Pham Marsha C Wibowo Renee C Wurth Sukanya Punthambaker Braden T Tierney Zhen Yang Mohammad W Hattab Julian Avila-Pacheco Clary B Clish Sarah Lessard George M Church Aleksandar D Kostic

Nat Med 2019 07 24;25(7):1104-1109. Epub 2019 Jun 24.

Section on Pathophysiology and Molecular Pharmacology, Joslin Diabetes Center, Boston, MA, USA.

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http://dx.doi.org/10.1038/s41591-019-0485-4DOI Listing
July 2019

Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease.

Authors:
Eric A Franzosa Alexandra Sirota-Madi Julian Avila-Pacheco Nadine Fornelos Henry J Haiser Stefan Reinker Tommi Vatanen A Brantley Hall Himel Mallick Lauren J McIver Jenny S Sauk Robin G Wilson Betsy W Stevens Justin M Scott Kerry Pierce Amy A Deik Kevin Bullock Floris Imhann Jeffrey A Porter Alexandra Zhernakova Jingyuan Fu Rinse K Weersma Cisca Wijmenga Clary B Clish Hera Vlamakis Curtis Huttenhower Ramnik J Xavier

Nat Microbiol 2019 May;4(5):898

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41564-019-0442-5DOI Listing
May 2019

Bacteroides-Derived Sphingolipids Are Critical for Maintaining Intestinal Homeostasis and Symbiosis.

Authors:
Eric M Brown Xiaobo Ke Daniel Hitchcock Sarah Jeanfavre Julian Avila-Pacheco Toru Nakata Timothy D Arthur Nadine Fornelos Cortney Heim Eric A Franzosa Nicki Watson Curtis Huttenhower Henry J Haiser Glen Dillow Daniel B Graham B Brett Finlay Aleksandar D Kostic Jeffrey A Porter Hera Vlamakis Clary B Clish Ramnik J Xavier

Cell Host Microbe 2019 05;25(5):668-680.e7

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Center for Computational and Integrative Biology and Department of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02114, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19313128193020
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http://dx.doi.org/10.1016/j.chom.2019.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544385PMC
May 2019

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.

Authors:
Jason Lloyd-Price Cesar Arze Ashwin N Ananthakrishnan Melanie Schirmer Julian Avila-Pacheco Tiffany W Poon Elizabeth Andrews Nadim J Ajami Kevin S Bonham Colin J Brislawn David Casero Holly Courtney Antonio Gonzalez Thomas G Graeber A Brantley Hall Kathleen Lake Carol J Landers Himel Mallick Damian R Plichta Mahadev Prasad Gholamali Rahnavard Jenny Sauk Dmitry Shungin Yoshiki Vázquez-Baeza Richard A White Jonathan Braun Lee A Denson Janet K Jansson Rob Knight Subra Kugathasan Dermot P B McGovern Joseph F Petrosino Thaddeus S Stappenbeck Harland S Winter Clary B Clish Eric A Franzosa Hera Vlamakis Ramnik J Xavier Curtis Huttenhower

Nature 2019 May 29;569(7758):655-662. Epub 2019 May 29.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41586-019-1237-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6650278PMC
May 2019

Gut microbiome structure and metabolic activity in inflammatory bowel disease.

Authors:
Eric A Franzosa Alexandra Sirota-Madi Julian Avila-Pacheco Nadine Fornelos Henry J Haiser Stefan Reinker Tommi Vatanen A Brantley Hall Himel Mallick Lauren J McIver Jenny S Sauk Robin G Wilson Betsy W Stevens Justin M Scott Kerry Pierce Amy A Deik Kevin Bullock Floris Imhann Jeffrey A Porter Alexandra Zhernakova Jingyuan Fu Rinse K Weersma Cisca Wijmenga Clary B Clish Hera Vlamakis Curtis Huttenhower Ramnik J Xavier

Nat Microbiol 2019 02 10;4(2):293-305. Epub 2018 Dec 10.

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://www.nature.com/articles/s41564-018-0306-4
Publisher Site
http://dx.doi.org/10.1038/s41564-018-0306-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342642PMC
February 2019

Cerebral tryptophan metabolism and outcome of tuberculous meningitis: an observational cohort study.

Authors:
Arjan van Laarhoven Sofiati Dian Raúl Aguirre-Gamboa Julian Avila-Pacheco Isis Ricaño-Ponce Carolien Ruesen Jessi Annisa Valerie A C M Koeken Lidya Chaidir Yang Li Tri Hanggono Achmad Leo A B Joosten Richard A Notebaart Rovina Ruslami Mihai G Netea Marcel M Verbeek Bachti Alisjahbana Vinod Kumar Clary B Clish A Rizal Ganiem Reinout van Crevel

Lancet Infect Dis 2018 05 3;18(5):526-535. Epub 2018 Feb 3.

Department of Internal Medicine and Radboud Center of Infectious Diseases (RCI), Radboud University Medical Center, Nijmegen, Netherlands. Electronic address:

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http://dx.doi.org/10.1016/S1473-3099(18)30053-7DOI Listing
May 2018

Diet, Genetics, and the Gut Microbiome Drive Dynamic Changes in Plasma Metabolites.

Authors:
Shiho Fujisaka Julian Avila-Pacheco Marion Soto Aleksandar Kostic Jonathan M Dreyfuss Hui Pan Siegfried Ussar Emrah Altindis Ning Li Lynn Bry Clary B Clish C Ronald Kahn

Cell Rep 2018 03;22(11):3072-3086

Section of Integrative Physiology and Metabolism, Joslin Diabetes Center and Harvard Medical School, Boston, MA 02215, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2018.02.060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5880543PMC
March 2018

Identifying therapeutic targets by combining transcriptional data with ordinal clinical measurements.

Authors:
Leila Pirhaji Pamela Milani Simona Dalin Brook T Wassie Denise E Dunn Robert J Fenster Julian Avila-Pacheco Paul Greengard Clary B Clish Myriam Heiman Donald C Lo Ernest Fraenkel

Nat Commun 2017 09 20;8(1):623. Epub 2017 Sep 20.

Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts, 02139, USA.

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http://dx.doi.org/10.1038/s41467-017-00353-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5606996PMC
September 2017

Revealing disease-associated pathways by network integration of untargeted metabolomics.

Authors:
Leila Pirhaji Pamela Milani Mathias Leidl Timothy Curran Julian Avila-Pacheco Clary B Clish Forest M White Alan Saghatelian Ernest Fraenkel

Nat Methods 2016 09 1;13(9):770-6. Epub 2016 Aug 1.

Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.3940DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5209295PMC
September 2016