Julia Krushkal

Julia Krushkal

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Julia Krushkal

Julia Krushkal

Publications by authors named "Julia Krushkal"

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Bioinformatics Tools and Resources for Cancer Immunotherapy Study.

Methods Mol Biol 2020 ;2055:649-678

Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1007/978-1-4939-9773-2_29DOI Listing
January 2020

Association of transcriptional levels of folate-mediated one-carbon metabolism-related genes in cancer cell lines with drug treatment response.

Cancer Genet 2019 Sep 5;237:19-38. Epub 2019 Jun 5.

Computational and Systems Biology Branch, Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, 9609 Medical Center Dr., Rockville, MD 20850, United States. Electronic address:

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http://dx.doi.org/10.1016/j.cancergen.2019.05.005DOI Listing
September 2019

Exposure time versus cytotoxicity for anticancer agents.

Cancer Chemother Pharmacol 2019 Aug 17;84(2):359-371. Epub 2019 May 17.

Developmental Therapeutics Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, 20852, USA.

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http://dx.doi.org/10.1007/s00280-019-03863-wDOI Listing
August 2019

Correlation of gene expression and associated mutation profiles of APOBEC3A, APOBEC3B, REV1, UNG, and FHIT with chemosensitivity of cancer cell lines to drug treatment.

Hum Genomics 2018 04 11;12(1):20. Epub 2018 Apr 11.

Computational and Systems Biology Branch, Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, 9609 Medical Center Dr, Rockville, MD, 20850, USA.

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http://dx.doi.org/10.1186/s40246-018-0150-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896091PMC
April 2018

Longitudinal Transcriptional Response of Glycosylation-Related Genes, Regulators, and Targets in Cancer Cell Lines Treated With 11 Antitumor Agents.

Cancer Inform 2017 15;16:1176935117747259. Epub 2017 Dec 15.

Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, USA.

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http://journals.sagepub.com/doi/10.1177/1176935117747259
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http://dx.doi.org/10.1177/1176935117747259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5734428PMC
December 2017

Small cell lung carcinoma cell line screen of etoposide/carboplatin plus a third agent.

Cancer Med 2017 Aug 1;6(8):1952-1964. Epub 2017 Aug 1.

Molecular Pharmacology Group, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, 21702.

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http://dx.doi.org/10.1002/cam4.1131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5548882PMC
August 2017

Concerted changes in transcriptional regulation of genes involved in DNA methylation, demethylation, and folate-mediated one-carbon metabolism pathways in the NCI-60 cancer cell line panel in response to cancer drug treatment.

Clin Epigenetics 2016 24;8:73. Epub 2016 Jun 24.

Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, 9609 Medical Center Dr., Rockville, MD 20850 USA.

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http://dx.doi.org/10.1186/s13148-016-0240-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4919895PMC
December 2016

Newborn umbilical cord blood DNA methylation and gene expression levels exhibit limited association with birth weight.

Chem Biodivers 2012 May;9(5):888-99

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA.

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http://dx.doi.org/10.1002/cbdv.201100395DOI Listing
May 2012

Phylogenetic classification of diverse LysR-type transcriptional regulators of a model prokaryote Geobacter sulfurreducens.

J Mol Evol 2012 Apr 20;74(3-4):187-205. Epub 2012 Apr 20.

Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, TN 38163, USA.

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http://link.springer.com/10.1007/s00239-012-9498-z
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http://dx.doi.org/10.1007/s00239-012-9498-zDOI Listing
April 2012

Alpha-adrenergic receptor gene polymorphisms and cardiovascular reactivity to stress in Black adolescents and young adults.

Psychophysiology 2012 Mar 14;49(3):401-12. Epub 2011 Nov 14.

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38104, USA.

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http://dx.doi.org/10.1111/j.1469-8986.2011.01319.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3275673PMC
March 2012

Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species.

OMICS 2011 Jul-Aug;15(7-8):495-506. Epub 2011 Jun 23.

Department of Preventive Medicine, the University of Tennessee Health Science Center, Memphis, USA.

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http://dx.doi.org/10.1089/omi.2010.0117DOI Listing
November 2011

Racial differences in gene-specific DNA methylation levels are present at birth.

Birth Defects Res A Clin Mol Teratol 2011 Aug 9;91(8):728-36. Epub 2011 Feb 9.

University of Tennessee Health Science Center, Memphis, TN 48103, USA.

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http://dx.doi.org/10.1002/bdra.20770DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3429933PMC
August 2011

Parental ages and levels of DNA methylation in the newborn are correlated.

BMC Med Genet 2011 Mar 31;12:47. Epub 2011 Mar 31.

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA.

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http://dx.doi.org/10.1186/1471-2350-12-47DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078852PMC
March 2011

Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.

Gene 2010 Dec 12;469(1-2):31-44. Epub 2010 Aug 12.

Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA.

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http://dx.doi.org/10.1016/j.gene.2010.08.005DOI Listing
December 2010

Association of birth weight with polymorphisms in the IGF2, H19, and IGF2R genes.

Pediatr Res 2010 Nov;68(5):429-34

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38103, USA.

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http://dx.doi.org/10.1203/PDR.0b013e3181f1ca99DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3063315PMC
November 2010

Beta-adrenergic receptor gene polymorphisms and cardiovascular reactivity to stress in Black adolescents and young adults.

Psychophysiology 2010 Sep 2;47(5):863-73. Epub 2010 Apr 2.

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38105, USA.

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http://dx.doi.org/10.1111/j.1469-8986.2010.01006.xDOI Listing
September 2010

Computational analysis of the evolution of 1-deoxy-D-xylulose-5-phosphate Reductoisomerase, an important enzyme in plant terpene biosynthesis.

Chem Biodivers 2010 May;7(5):1098-110

Department Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA 01609, USA.

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http://dx.doi.org/10.1002/cbdv.200900313DOI Listing
May 2010

Association of maternally inherited GNAS alleles with African-American male birth weight.

Int J Pediatr Obes 2010 Apr;5(2):177-84

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN 38103, USA.

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http://dx.doi.org/10.3109/17477160903111714DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2928065PMC
April 2010

GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.

OMICS 2009 Oct;13(5):439-49

Department of Preventive Medicine, The University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.

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http://dx.doi.org/10.1089/omi.2009.0081DOI Listing
October 2009

Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer.

Funct Integr Genomics 2009 Feb 2;9(1):15-25. Epub 2008 Aug 2.

Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N. Pauline Ste. 633, Memphis, TN 38163, USA.

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http://dx.doi.org/10.1007/s10142-008-0094-7DOI Listing
February 2009

Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.

BMC Genomics 2008 Oct 9;9:471. Epub 2008 Oct 9.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, USA.

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http://dx.doi.org/10.1186/1471-2164-9-471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2577667PMC
October 2008

Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.

OMICS 2008 Mar;12(1):33-59

Department of Chemical Engineering & Applied Chemistry, Institute of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, Canada.

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http://dx.doi.org/10.1089/omi.2007.0043DOI Listing
March 2008

Site -2548 of the leptin gene is associated with gender-specific trends in newborn size and cord leptin levels.

Int J Pediatr Obes 2007 ;2(3):130-7

Children's Foundation Research Center and Center of Genomics and Bioinformatics, University of Tennessee Health Science Center, Memphis, TN 38122, USA.

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http://dx.doi.org/10.1080/17477160701286734DOI Listing
January 2008

Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.

Biosystems 2007 Sep-Oct;90(2):421-41. Epub 2006 Oct 26.

Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N. Pauline St., Ste. 633, Memphis, TN 38163, USA.

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http://dx.doi.org/10.1016/j.biosystems.2006.10.006DOI Listing
November 2007

Hepatitis C hypervariable region 1: association of reduced selection pressure in african americans with treatment failure.

Dig Dis Sci 2007 Oct 5;52(10):2540-9. Epub 2007 Apr 5.

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.

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http://dx.doi.org/10.1007/s10620-006-9726-8DOI Listing
October 2007

Association between paternally inherited haplotypes upstream of the insulin gene and umbilical cord IGF-II levels.

Pediatr Res 2007 Oct;62(4):451-5

Department of Pediatrics, University of Tennessee Health Science Center, Memphis, Tennessee 38103, USA.

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http://dx.doi.org/10.1203/PDR.0b013e3181425841DOI Listing
October 2007

Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.

Funct Integr Genomics 2007 Jul 4;7(3):229-55. Epub 2007 Apr 4.

Department of Preventive Medicine, University of Tennessee Health Science Center, 66 N. Pauline, Memphis, TN 38163, USA.

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http://link.springer.com/10.1007/s10142-007-0048-5
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http://dx.doi.org/10.1007/s10142-007-0048-5DOI Listing
July 2007

Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.

Gene 2006 Dec 20;384:73-95. Epub 2006 Jul 20.

Department of Preventive Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, USA.

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http://dx.doi.org/10.1016/j.gene.2006.06.025DOI Listing
December 2006

Evolutionary history of orthopoxvirus proteins similar to human complement regulators.

Gene 2005 Aug;355:40-7

Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, MA, USA.

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http://dx.doi.org/10.1016/j.gene.2005.05.008DOI Listing
August 2005

Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.

J Theor Biol 2004 Sep;230(1):133-44

Department of Preventive Medicine, Center of Genomics and Bioinformatics, University of Tennesee Health Science Center, 66 N. Pauline St., Ste. 633, Memphis, TN 38163, USA.

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http://dx.doi.org/10.1016/j.jtbi.2004.04.022DOI Listing
September 2004