Publications by authors named "Juergen Kast"

44Publications

Immunoproteasome deficiency in non-small cell lung cancer and its relevance to immunotherapy.

Authors:
Juergen Kast

J Thorac Dis 2016 Sep;8(9):E1082-E1086

The Biomedical Research Centre, University of British Columbia, Vancouver, Canada; Department of Chemistry, University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.21037/jtd.2016.08.80DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059315PMC
September 2016

Quantitative Protein Sulfenic Acid Analysis Identifies Platelet Releasate-Induced Activation of Integrin β on Monocytes via NADPH Oxidase.

J Proteome Res 2016 12 7;15(12):4221-4233. Epub 2016 Oct 7.

The Biomedical Research Centre, ‡Department of Chemistry, and §Centre for Blood Research, University of British Columbia , Vancouver, Canada V6T 1Z3.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.6b00212
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http://dx.doi.org/10.1021/acs.jproteome.6b00212DOI Listing
December 2016

Quantitative Glycoproteomic Analysis Identifies Platelet-Induced Increase of Monocyte Adhesion via the Up-Regulation of Very Late Antigen 5.

J Proteome Res 2015 Aug 30;14(8):3015-26. Epub 2015 Jul 30.

†The Biomedical Research Centre, ‡Department of Chemistry, and §Centre for Blood Research, University of British Columbia, Vancouver, B. C. V6T 1Z3, Canada.

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http://dx.doi.org/10.1021/acs.jproteome.5b00407DOI Listing
August 2015

Formaldehyde cross-linking and structural proteomics: Bridging the gap.

Methods 2015 Nov 13;89:91-8. Epub 2015 May 13.

The Biomedical Research Centre, University of British Columbia, Vancouver, BC V6T 1Z3, Canada; Department of Chemistry, University of British Columbia, Vancouver, BC V6T 1Z3, Canada; Centre for Blood Research, University of British Columbia, Vancouver, BC V6T 1Z3, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2015.05.006DOI Listing
November 2015

Identification of total reversible cysteine oxidation in an atherosclerosis model using a modified biotin switch assay.

J Proteome Res 2015 May 2;14(5):2026-35. Epub 2015 Apr 2.

§Department of Chemistry, University of British Columbia, Vancouver, BC, Canada V6T 1Z1.

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http://dx.doi.org/10.1021/acs.jproteome.5b00133DOI Listing
May 2015

Development and application of a quantitative multiplexed small GTPase activity assay using targeted proteomics.

J Proteome Res 2015 Feb 21;14(2):967-76. Epub 2015 Jan 21.

The Biomedical Research Centre, ∥The Centre for Blood Research, University of British Columbia , Vancouver, BC V6T 1Z3, Canada.

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http://dx.doi.org/10.1021/pr501010vDOI Listing
February 2015

Global proteome analysis identifies active immunoproteasome subunits in human platelets.

Mol Cell Proteomics 2014 Dec 21;13(12):3308-19. Epub 2014 Aug 21.

From the ‡The Biomedical Research Centre, 2222 Health Sciences Mall, University of British Columbia, Vancouver, BC V6T 1Z3, Canada; §The Centre for Blood Research, 2350 Health Sciences Mall, University of British Columbia, Vancouver, BC V6T 1Z3, Canada; ¶The Department of Chemistry, 2036 Main Mall, University of British Columbia, Vancouver, BC V6T 1Z1, Canada;

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http://dx.doi.org/10.1074/mcp.M113.031757DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256485PMC
December 2014

Forced protein unfolding leads to highly elastic and tough protein hydrogels.

Nat Commun 2013 ;4:2974

1] Department of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z1 [2] State Key Laboratory of Precision Measurements Technology and Instruments, School of Precision Instrument and Opto-Electronics Engineering, Tianjin University, Tianjin 30072, China.

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http://dx.doi.org/10.1038/ncomms3974DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3983047PMC
July 2014

Chemical proteomics and its impact on the drug discovery process.

Expert Rev Proteomics 2012 Jun;9(3):281-91

The Biomedical Research Centre, University of British Columbia, Room #401, 2222 Health Sciences Mall, Vancouver, BC, V6T1Z3 Canada.

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http://dx.doi.org/10.1586/epr.12.22DOI Listing
June 2012

Advancing formaldehyde cross-linking towards quantitative proteomic applications.

Anal Bioanal Chem 2012 Sep 19;404(4):1057-67. Epub 2012 May 19.

The Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada.

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http://link.springer.com/10.1007/s00216-012-6065-9
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http://dx.doi.org/10.1007/s00216-012-6065-9DOI Listing
September 2012

Liquid chromatography-atmospheric pressure electron capture dissociation mass spectrometry for the structural analysis of peptides and proteins.

Anal Chem 2012 May 20;84(9):4221-6. Epub 2012 Apr 20.

Department of Chemistry, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z1.

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http://dx.doi.org/10.1021/ac300648gDOI Listing
May 2012

A new ion source and procedures for atmospheric pressure-electron capture dissociation of peptides.

J Am Soc Mass Spectrom 2011 Oct 16;22(10):1699-706. Epub 2011 Jul 16.

Department of Chemistry, University of British Columbia, Vancouver, BC, V6T 1Z1, Canada.

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http://link.springer.com/content/pdf/10.1007/s13361-011-0202
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http://link.springer.com/10.1007/s13361-011-0202-0
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http://dx.doi.org/10.1007/s13361-011-0202-0DOI Listing
October 2011

A quick reality check for microRNA target prediction.

Authors:
Juergen Kast

Expert Rev Proteomics 2011 Apr;8(2):149-52

The Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC, V6T 1Z3, Canada.

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http://dx.doi.org/10.1586/epr.11.18DOI Listing
April 2011

In silico protein interaction analysis using the global proteome machine database.

J Proteome Res 2011 Feb 2;10(2):656-68. Epub 2010 Dec 2.

The Biomedical Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1021/pr1008652DOI Listing
February 2011

Mass spectrometry-based proteomics in biomedical research: emerging technologies and future strategies.

Expert Rev Mol Med 2010 Sep 23;12:e30. Epub 2010 Sep 23.

The Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada.

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http://www.journals.cambridge.org/abstract_S1462399410001614
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http://dx.doi.org/10.1017/S1462399410001614DOI Listing
September 2010

Accessibility governs the relative reactivity of basic residues in formaldehyde-induced protein modifications.

Anal Chim Acta 2010 Aug 3;676(1-2):60-7. Epub 2010 Aug 3.

The Biomedical Research Centre, University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.1016/j.aca.2010.07.040DOI Listing
August 2010

Optimization of formaldehyde cross-linking for protein interaction analysis of non-tagged integrin beta1.

J Biomed Biotechnol 2010 28;2010:927585. Epub 2010 Jun 28.

The Biomedical Research Centre, University of British Columbia, Vancouver, BC V6T1Z3, Canada.

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http://www.hindawi.com/journals/bmri/2010/927585/
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http://dx.doi.org/10.1155/2010/927585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896913PMC
October 2010

Applications of current proteomics techniques in modern drug design.

Curr Comput Aided Drug Des 2010 Sep;6(3):147-64

The Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.2174/157340910791760064DOI Listing
September 2010

Making connections for life: an in vivo map of the yeast interactome.

Authors:
Juergen Kast

HFSP J 2008 Oct 13;2(5):244-50. Epub 2008 Aug 13.

Department of Chemistry and The Biomedical Research Centre, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.

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http://dx.doi.org/10.2976/1.2969243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639943PMC
October 2008

A carboxy-terminal affinity tag for the purification and mass spectrometric characterization of integral membrane proteins.

J Proteome Res 2009 May;8(5):2388-96

Biomedical Research Centre, Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1021/pr801008cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103948PMC
May 2009

Identification of nitroxyl-induced modifications in human platelet proteins using a novel mass spectrometric detection method.

Mol Cell Proteomics 2009 May 31;8(5):887-903. Epub 2008 Dec 31.

The Biomedical Research Centre, University of British Columbia, Vancouver, British Columbia V6T1Z3, Canada.

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http://dx.doi.org/10.1074/mcp.M800230-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689763PMC
May 2009

Current approaches for global post-translational modification discovery and mass spectrometric analysis.

Anal Chim Acta 2008 Oct 22;627(1):50-61. Epub 2008 Mar 22.

The Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada.

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http://linkinghub.elsevier.com/retrieve/pii/S000326700800477
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http://dx.doi.org/10.1016/j.aca.2008.03.032DOI Listing
October 2008

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions.

Anal Chim Acta 2008 Jun 2;618(2):168-83. Epub 2008 May 2.

The Biomedical Research Centre, University of British Columbia, Vancouver, B.C., Canada.

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http://dx.doi.org/10.1016/j.aca.2008.04.049DOI Listing
June 2008

Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions.

J Mass Spectrom 2008 Jun;43(6):699-715

Biomedical Research Centre, University of British Columbia, Vancouver, BC V6T-1Z3, Canada.

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http://dx.doi.org/10.1002/jms.1415DOI Listing
June 2008

Comprehensive proteomic analysis of protein changes during platelet storage requires complementary proteomic approaches.

Transfusion 2008 Mar 7;48(3):425-35. Epub 2007 Dec 7.

Department of Biochemistry and Molecular Biology,University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1111/j.1537-2995.2007.01546.xDOI Listing
March 2008

A multiplexed post-translational modification monitoring approach on a matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometer.

Rapid Commun Mass Spectrom 2007 ;21(13):2147-56

The Biomedical Research Centre, University of British Columbia, Vancouver, B.C., Canada.

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http://doi.wiley.com/10.1002/rcm.3075
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http://dx.doi.org/10.1002/rcm.3075DOI Listing
August 2007

Advances in the analysis of dynamic protein complexes by proteomics and data processing.

Anal Bioanal Chem 2006 Oct 25;386(3):482-93. Epub 2006 Aug 25.

The Biomedical Research Centre, University of British Columbia, 2222 Health Sciences Mall, Vancouver, BC, V6T 1Z3, Canada.

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http://dx.doi.org/10.1007/s00216-006-0609-9DOI Listing
October 2006

Correlation and convolution analysis of peptide mass spectra.

Anal Chem 2006 Apr;78(8):2600-7

Biomedical Research Centre, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.

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http://pubs.acs.org/doi/abs/10.1021/ac051639u
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http://dx.doi.org/10.1021/ac051639uDOI Listing
April 2006

Multiple neutral loss monitoring (MNM): a multiplexed method for post-translational modification screening.

J Am Soc Mass Spectrom 2006 Mar 27;17(3):307-17. Epub 2006 Jan 27.

The Biomedical Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1016/j.jasms.2005.11.002DOI Listing
March 2006

Mass spectrometric characterization of lipid-modified peptides for the analysis of acylated proteins.

J Mass Spectrom 2006 Feb;41(2):229-41

The Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada.

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http://doi.wiley.com/10.1002/jms.981
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http://dx.doi.org/10.1002/jms.981DOI Listing
February 2006

Statistical evaluation of electrospray tandem mass spectra for optimized peptide fragmentation.

J Am Soc Mass Spectrom 2005 Apr;16(4):505-14

The Biomedical Research Center, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1016/j.jasms.2005.01.002DOI Listing
April 2005

Single-step Strep-tag purification for the isolation and identification of protein complexes from mammalian cells.

Proteomics 2005 Apr;5(5):1199-203

Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland.

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http://dx.doi.org/10.1002/pmic.200400991DOI Listing
April 2005

RS1, a discoidin domain-containing retinal cell adhesion protein associated with X-linked retinoschisis, exists as a novel disulfide-linked octamer.

J Biol Chem 2005 Mar 11;280(11):10721-30. Epub 2005 Jan 11.

Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, V6T 1Z3, Canada.

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http://dx.doi.org/10.1074/jbc.M413117200DOI Listing
March 2005

A proteolytic fragment of Mcl-1 exhibits nuclear localization and regulates cell growth by interaction with Cdk1.

Biochem J 2005 May;387(Pt 3):659-67

Department of Medicine, University of British Columbia and Vancouver Coastal Health Research Institute, Jack Bell Research Centre, 2660 Oak St., Vancouver, BC, Canada V6H 3Z6.

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http://dx.doi.org/10.1042/BJ20041596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1134995PMC
May 2005

Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry.

Proteomics 2004 Dec;4(12):3845-54

The Biomedical Research Centre, University of British Columbia, Vancouver, Canada.

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http://dx.doi.org/10.1002/pmic.200400856DOI Listing
December 2004

Matrix-assisted laser desorption/ionization directed nano-electrospray ionization tandem mass spectrometric analysis for protein identification.

Rapid Commun Mass Spectrom 2003 ;17(16):1825-34

Biomedical Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z3, Canada.

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http://dx.doi.org/10.1002/rcm.1114DOI Listing
September 2003