Judy Cho

Judy Cho

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Augmented intelligence with natural language processing applied to electronic health records for identifying patients with non-alcoholic fatty liver disease at risk for disease progression.

Int J Med Inform 2019 09 6;129:334-341. Epub 2019 Jul 6.

The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, USA; Division of Nephrology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S13865056193026
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http://dx.doi.org/10.1016/j.ijmedinf.2019.06.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6717556PMC
September 2019

Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy.

Cell 2019 Sep 29;178(6):1493-1508.e20. Epub 2019 Aug 29.

Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Genetics and Genomics Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.08.008DOI Listing
September 2019

Blood-Derived DNA Methylation Signatures of Crohn's Disease and Severity of Intestinal Inflammation.

Gastroenterology 2019 06 16;156(8):2254-2265.e3. Epub 2019 Feb 16.

Genetics and Molecular Biology Program, Emory University, Atlanta, Georgia; Division of Pediatric Gastroenterology, Department of Pediatrics, Emory University School of Medicine and Children's Healthcare of Atlanta, Atlanta, Georgia; Department of Human Genetics, Emory University, Atlanta, Georgia. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2019.01.270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6529254PMC
June 2019

Genetic Factors and the Intestinal Microbiome Guide Development of Microbe-Based Therapies for Inflammatory Bowel Diseases.

Gastroenterology 2019 06 14;156(8):2174-2189. Epub 2019 Mar 14.

Department of Pathology, University of California-San Diego, La Jolla, California; Chiba University and University of California-San Diego Center for Mucosal Immunology, Allergy, and Vaccines (CU-UCSD cMAV), La Jolla, California. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2019.03.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6568267PMC
June 2019

Earlier Anti-Tumor Necrosis Factor Therapy of Crohn's Disease Correlates with Slower Progression of Bowel Damage.

Dig Dis Sci 2019 Jan 3. Epub 2019 Jan 3.

Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY, 10029-6574, USA.

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http://dx.doi.org/10.1007/s10620-018-5434-4DOI Listing
January 2019

Gut microbiota density influences host physiology and is shaped by host and microbial factors.

Elife 2019 Jan 22;8. Epub 2019 Jan 22.

Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, United States.

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https://elifesciences.org/articles/40553
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http://dx.doi.org/10.7554/eLife.40553DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342524PMC
January 2019

Luminally polarized mural and vascular remodeling in ileal strictures of Crohn's disease.

Hum Pathol 2018 09 16;79:42-49. Epub 2018 Mar 16.

Department of Pathology, Icahn School of Medicine at Mount Sinai, New York 10029, NY, USA; Dr. Henry D. Janowitz Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address:

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http://dx.doi.org/10.1016/j.humpath.2018.03.004DOI Listing
September 2018

Magnetic Resonance Imaging Predicts Histopathological Composition of Ileal Crohn's Disease.

J Crohns Colitis 2018 May;12(6):718-729

Translational and Molecular Imaging Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

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http://dx.doi.org/10.1093/ecco-jcc/jjx186DOI Listing
May 2018

Predictors of Hospital Readmissions for Ulcerative Colitis in the United States: A National Database Study.

Inflamm Bowel Dis 2017 03;23(3):347-356

*Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York; †The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York; and ‡Division of Gastroenterology and Nutrition, Memorial Sloan Kettering Cancer Center, New York, New York.

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http://dx.doi.org/10.1097/MIB.0000000000001041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6071407PMC
March 2017

Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

Gastroenterology 2017 01 28;152(1):206-217.e2. Epub 2016 Sep 28.

Department of Pediatrics, Emory University School of Medicine, Atlanta, Georgia; Department of Human Genetics, Emory University School of Medicine, Atlanta, Georgia. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2016.09.032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164948PMC
January 2017

High-Throughput Characterization of Blood Serum Proteomics of IBD Patients with Respect to Aging and Genetic Factors.

PLoS Genet 2017 01 27;13(1):e1006565. Epub 2017 Jan 27.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5271178PMC
January 2017

The Promise of Epigenetics. Has It Delivered New Insights?

Authors:
Judy H Cho

Dig Dis 2016 16;34(1-2):12-9. Epub 2016 Mar 16.

Genetics and Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, N.Y., USA.

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http://dx.doi.org/10.1159/000442919DOI Listing
December 2016

Different tissue phagocytes sample apoptotic cells to direct distinct homeostasis programs.

Nature 2016 11 9;539(7630):565-569. Epub 2016 Nov 9.

Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029, USA.

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http://dx.doi.org/10.1038/nature20138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807003PMC
November 2016

A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GM-CSF.

Gastroenterology 2016 10 1;151(4):710-723.e2. Epub 2016 Jul 1.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York; Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, New York; The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York. Electronic address:

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http://dx.doi.org/10.1053/j.gastro.2016.06.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037012PMC
October 2016

Genetic Predictors of Benign Course of Ulcerative Colitis-A North American Inflammatory Bowel Disease Genetics Consortium Study.

Inflamm Bowel Dis 2016 10;22(10):2311-6

*Division of Gastroenterology, McGill University Health Center, Montreal, Quebec, Canada; †Montreal Heart Institute, Montreal, Quebec, Canada; ‡Université de Montréal, Montreal, Quebec, Canada; §Division of Gastroenterology, Mount Sinai Hospital, Toronto, Ontario, Canada; ‖Division of Gastroenterology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania; ¶Section of Digestive Diseases, Yale University, New Haven, Connecticut; **Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York; ††Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, New York; ‡‡Translational Genomics Group, F. Widjaja Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, California; §§Division of Gastroenterology, University of Chicago, Chicago, Illinois; and ‖‖Meyerhoff Inflammatory Bowel Diseases Center, Division of Gastroenterology, Johns Hopkins School of Medicine, Baltimore, Maryland.

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http://dx.doi.org/10.1097/MIB.0000000000000913DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5098421PMC
October 2016

A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis.

Nat Commun 2016 08 9;7:12342. Epub 2016 Aug 9.

Division of Gastroenterology, Hepatology and Nutrition, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15261, USA.

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http://dx.doi.org/10.1038/ncomms12342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4980482PMC
August 2016

Whole-exome Sequence Analysis Implicates Rare Il17REL Variants in Familial and Sporadic Inflammatory Bowel Disease.

Inflamm Bowel Dis 2016 Jan;22(1):20-7

*Department of Pediatrics and †Center for Research Informatics, The University of Chicago, Chicago, Illinois; ‡Northern Institute for Cancer Research, Newcastle University, Newcastle-upon-Tyne, United Kingdom; §Meyerhoff Inflammatory Bowel Disease Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland; ‖Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland; ¶F. Widjaja Family Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, California; **Department of Genetics and Genomic Sciences and ††Zane Cohen Centre for Digestive Diseases, Department of Medicine, Mount Sinai Hospital, The University of Toronto, Toronto, Ontario, Canada; and ‡‡Department of Medicine, The Icahn School of Medicine at Mount Sinai, New York, New York.

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http://dx.doi.org/10.1097/MIB.0000000000000610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679526PMC
January 2016

Genetics of Inflammatory Bowel Diseases.

Gastroenterology 2015 Oct 7;149(5):1163-1176.e2. Epub 2015 Aug 7.

Departments of Genetics and Medicine, Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, New York. Electronic address:

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http://ac.els-cdn.com/S0016508511002009/1-s2.0-S001650851100
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http://www.cell.com/trends/immunology/pdf/S1471-4906(13)0005
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http://ac.els-cdn.com/S0016508502158963/1-s2.0-S001650850215
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http://dx.doi.org/10.1053/j.gastro.2015.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915781PMC
October 2015

Improved integrative framework combining association data with gene expression features to prioritize Crohn's disease genes.

Hum Mol Genet 2015 Jul 1;24(14):4147-57. Epub 2015 May 1.

Department of Genetics and Genomic Sciences, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA,

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http://dx.doi.org/10.1093/hmg/ddv142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4560067PMC
July 2015

Heterogeneity of autoimmune diseases: pathophysiologic insights from genetics and implications for new therapies.

Nat Med 2015 Jul 29;21(7):730-8. Epub 2015 Jun 29.

Kennedy Institute of Rheumatology, University of Oxford, Oxford, UK.

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http://search.proquest.com/openview/318418030fdad9cf1b913ae5
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http://dx.doi.org/10.1038/nm.3897DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5716342PMC
July 2015

The heritable immune system.

Authors:
Judy Cho

Nat Biotechnol 2015 Jun;33(6):608-9

Icahn School of Medicine at Mount Sinai, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.3256DOI Listing
June 2015

Bridging the gap between host immune response and intestinal dysbiosis in inflammatory bowel disease: does immunoglobulin A mark the spot?

Clin Gastroenterol Hepatol 2015 May 25;13(5):842-6. Epub 2015 Feb 25.

Division of Pediatric Gastroenterology, Nutrition and Liver Diseases, Department of Pediatrics, Hasbro Children's Hospital/Rhode Island Hospital, Providence, Rhode Island; Warren Alpert School of Medicine at Brown University, Providence, Rhode Island.

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https://linkinghub.elsevier.com/retrieve/pii/S15423565150016
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http://dx.doi.org/10.1016/j.cgh.2015.02.028DOI Listing
May 2015

Effector CD4+ T cell expression signatures and immune-mediated disease associated genes.

PLoS One 2012 8;7(6):e38510. Epub 2012 Jun 8.

Department of Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0038510PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371029PMC
February 2015

Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease.

Cell 2014 Aug;158(5):1000-1010

Department of Immunobiology, Yale University School of Medicine, New Haven, CT 06510, USA; Howard Hughes Medical Institute, Yale University, New Haven, CT 06510, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2014.08.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174347PMC
August 2014

Pattern recognition receptor signaling in human dendritic cells is enhanced by ICOS ligand and modulated by the Crohn's disease ICOSLG risk allele.

Immunity 2014 May;40(5):734-46

Department of Internal Medicine, Section of Digestive Diseases, Yale University, New Haven, CT 06510, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2014.04.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157904PMC
May 2014

Age and CD161 expression contribute to inter-individual variation in interleukin-23 response in CD8+ memory human T cells.

PLoS One 2013 1;8(3):e57746. Epub 2013 Mar 1.

Department of Medicine and Genetics, Yale University School of Medicine, New Haven, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0057746PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585933PMC
August 2013

Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.

Nat Genet 2013 Jun 21;45(6):670-5. Epub 2013 Apr 21.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://petercroucher.com/wp-content/uploads/2013/10/51_Natur
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http://www.nature.com/doifinder/10.1038/ng.2616
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http://dx.doi.org/10.1038/ng.2616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3667736PMC
June 2013

Detecting identity by descent and homozygosity mapping in whole-exome sequencing data.

PLoS One 2012 11;7(10):e47618. Epub 2012 Oct 11.

Department of Computer Science, Columbia University, New York, NY, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0047618PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3469503PMC
February 2013

Empirical Bayes correction for the Winner's Curse in genetic association studies.

Genet Epidemiol 2013 Jan 25;37(1):60-8. Epub 2012 Sep 25.

Section of Digestive Diseases, Yale School of Medicine, New Haven, Connecticut 06511, USA.

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http://dx.doi.org/10.1002/gepi.21683DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4048064PMC
January 2013

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Authors:
Luke Jostins Stephan Ripke Rinse K Weersma Richard H Duerr Dermot P McGovern Ken Y Hui James C Lee L Philip Schumm Yashoda Sharma Carl A Anderson Jonah Essers Mitja Mitrovic Kaida Ning Isabelle Cleynen Emilie Theatre Sarah L Spain Soumya Raychaudhuri Philippe Goyette Zhi Wei Clara Abraham Jean-Paul Achkar Tariq Ahmad Leila Amininejad Ashwin N Ananthakrishnan Vibeke Andersen Jane M Andrews Leonard Baidoo Tobias Balschun Peter A Bampton Alain Bitton Gabrielle Boucher Stephan Brand Carsten Büning Ariella Cohain Sven Cichon Mauro D'Amato Dirk De Jong Kathy L Devaney Marla Dubinsky Cathryn Edwards David Ellinghaus Lynnette R Ferguson Denis Franchimont Karin Fransen Richard Gearry Michel Georges Christian Gieger Jürgen Glas Talin Haritunians Ailsa Hart Chris Hawkey Matija Hedl Xinli Hu Tom H Karlsen Limas Kupcinskas Subra Kugathasan Anna Latiano Debby Laukens Ian C Lawrance Charlie W Lees Edouard Louis Gillian Mahy John Mansfield Angharad R Morgan Craig Mowat William Newman Orazio Palmieri Cyriel Y Ponsioen Uros Potocnik Natalie J Prescott Miguel Regueiro Jerome I Rotter Richard K Russell Jeremy D Sanderson Miquel Sans Jack Satsangi Stefan Schreiber Lisa A Simms Jurgita Sventoraityte Stephan R Targan Kent D Taylor Mark Tremelling Hein W Verspaget Martine De Vos Cisca Wijmenga David C Wilson Juliane Winkelmann Ramnik J Xavier Sebastian Zeissig Bin Zhang Clarence K Zhang Hongyu Zhao Mark S Silverberg Vito Annese Hakon Hakonarson Steven R Brant Graham Radford-Smith Christopher G Mathew John D Rioux Eric E Schadt Mark J Daly Andre Franke Miles Parkes Severine Vermeire Jeffrey C Barrett Judy H Cho

Nature 2012 Nov;491(7422):119-24

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1HH, UK.

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http://dx.doi.org/10.1038/nature11582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491803PMC
November 2012

Genomics and the multifactorial nature of human autoimmune disease.

N Engl J Med 2011 Oct;365(17):1612-23

Department of Medicine, Section of Digestive Diseases, Yale University, New Haven, CT 06520-8019, USA.

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http://dx.doi.org/10.1056/NEJMra1100030DOI Listing
October 2011

Identification of association between disease and multiple markers via sparse partial least-squares regression.

Genet Epidemiol 2011 Sep 15;35(6):479-86. Epub 2011 Jun 15.

Department of Epidemiology and Public Health, Yale University, 300 George Street 503, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1002/gepi.20596DOI Listing
September 2011

Improved risk prediction for Crohn's disease with a multi-locus approach.

Hum Mol Genet 2011 Jun 22;20(12):2435-42. Epub 2011 Mar 22.

Department of Epidemiology and Public Health, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/hmg/ddr116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3298027PMC
June 2011

Recent insights into the genetics of inflammatory bowel disease.

Gastroenterology 2011 May;140(6):1704-12

Department of Medicine and Genetics, Yale University, New Haven, Connecticut, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S001650851100200
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http://dx.doi.org/10.1053/j.gastro.2011.02.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4947143PMC
May 2011

Incorporating biological pathways via a Markov random field model in genome-wide association studies.

PLoS Genet 2011 Apr 7;7(4):e1001353. Epub 2011 Apr 7.

Division of Biostatistics, Department of Clinical Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1001353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072362PMC
April 2011

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.

Authors:
Carl A Anderson Gabrielle Boucher Charlie W Lees Andre Franke Mauro D'Amato Kent D Taylor James C Lee Philippe Goyette Marcin Imielinski Anna Latiano Caroline Lagacé Regan Scott Leila Amininejad Suzannah Bumpstead Leonard Baidoo Robert N Baldassano Murray Barclay Theodore M Bayless Stephan Brand Carsten Büning Jean-Frédéric Colombel Lee A Denson Martine De Vos Marla Dubinsky Cathryn Edwards David Ellinghaus Rudolf S N Fehrmann James A B Floyd Timothy Florin Denis Franchimont Lude Franke Michel Georges Jürgen Glas Nicole L Glazer Stephen L Guthery Talin Haritunians Nicholas K Hayward Jean-Pierre Hugot Gilles Jobin Debby Laukens Ian Lawrance Marc Lémann Arie Levine Cecile Libioulle Edouard Louis Dermot P McGovern Monica Milla Grant W Montgomery Katherine I Morley Craig Mowat Aylwin Ng William Newman Roel A Ophoff Laura Papi Orazio Palmieri Laurent Peyrin-Biroulet Julián Panés Anne Phillips Natalie J Prescott Deborah D Proctor Rebecca Roberts Richard Russell Paul Rutgeerts Jeremy Sanderson Miquel Sans Philip Schumm Frank Seibold Yashoda Sharma Lisa A Simms Mark Seielstad A Hillary Steinhart Stephan R Targan Leonard H van den Berg Morten Vatn Hein Verspaget Thomas Walters Cisca Wijmenga David C Wilson Harm-Jan Westra Ramnik J Xavier Zhen Z Zhao Cyriel Y Ponsioen Vibeke Andersen Leif Torkvist Maria Gazouli Nicholas P Anagnou Tom H Karlsen Limas Kupcinskas Jurgita Sventoraityte John C Mansfield Subra Kugathasan Mark S Silverberg Jonas Halfvarson Jerome I Rotter Christopher G Mathew Anne M Griffiths Richard Gearry Tariq Ahmad Steven R Brant Mathias Chamaillard Jack Satsangi Judy H Cho Stefan Schreiber Mark J Daly Jeffrey C Barrett Miles Parkes Vito Annese Hakon Hakonarson Graham Radford-Smith Richard H Duerr Séverine Vermeire Rinse K Weersma John D Rioux

Nat Genet 2011 Mar 6;43(3):246-52. Epub 2011 Feb 6.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1038/ng.764DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084597PMC
March 2011

Detecting epistatic SNPs associated with complex diseases via a Bayesian classification tree search method.

Ann Hum Genet 2011 Jan 1;75(1):112-21. Epub 2010 Dec 1.

Department of Clinical Sciences, University of Texas Southwestern Medical Center, Dallas, USA.

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http://dx.doi.org/10.1111/j.1469-1809.2010.00627.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178841PMC
January 2011

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.

Nat Genet 2010 Dec;42(12):1118-25

Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Kiel, Germany.

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http://dx.doi.org/10.1038/ng.717DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3299551PMC
December 2010

Pathway analysis comparison using Crohn's disease genome wide association studies.

BMC Med Genomics 2010 Jun 28;3:25. Epub 2010 Jun 28.

Robert S Boas Center for Human Genetics and Genomics, Feinstein Institute for Medical Research, Manhasset, New York, USA.

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http://dx.doi.org/10.1186/1755-8794-3-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2908056PMC
June 2010

Assessment of DNA methylation at the interferon regulatory factor 5 (IRF5) promoter region in inflammatory bowel diseases.

Int J Colorectal Dis 2010 May 2;25(5):553-6. Epub 2010 Feb 2.

Section of Pediatric Gastroenterology, Baylor College of Medicine, Houston, TX 77030-2399, USA.

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http://dx.doi.org/10.1007/s00384-010-0874-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751749PMC
May 2010

Genome-wide association studies: present status and future directions.

Authors:
Judy H Cho

Gastroenterology 2010 May 16;138(5):1668-1672.e1. Epub 2010 Mar 16.

Department of Medicine and Genetics, Yale University, New Haven, Connecticut 06510, USA.

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http://dx.doi.org/10.1053/j.gastro.2010.03.028DOI Listing
May 2010

Comparisons of multi-marker association methods to detect association between a candidate region and disease.

Genet Epidemiol 2010 Apr;34(3):201-12

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06511, USA.

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http://doi.wiley.com/10.1002/gepi.20448
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http://dx.doi.org/10.1002/gepi.20448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158797PMC
April 2010

Unraveling the genetics of autoimmunity.

Cell 2010 Mar;140(6):791-7

Department of Immunobiology, Yale University, New Haven, CT 06520, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00928674100023
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http://dx.doi.org/10.1016/j.cell.2010.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491807PMC
March 2010

Practical issues in building risk-predicting models for complex diseases.

J Biopharm Stat 2010 Mar;20(2):415-40

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1080/10543400903572829DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3685822PMC
March 2010

Common variants at five new loci associated with early-onset inflammatory bowel disease.

Authors:
Marcin Imielinski Robert N Baldassano Anne Griffiths Richard K Russell Vito Annese Marla Dubinsky Subra Kugathasan Jonathan P Bradfield Thomas D Walters Patrick Sleiman Cecilia E Kim Aleixo Muise Kai Wang Joseph T Glessner Shehzad Saeed Haitao Zhang Edward C Frackelton Cuiping Hou James H Flory George Otieno Rosetta M Chiavacci Robert Grundmeier Massimo Castro Anna Latiano Bruno Dallapiccola Joanne Stempak Debra J Abrams Kent Taylor Dermot McGovern Gary Silber Iwona Wrobel Antonio Quiros Jeffrey C Barrett Sarah Hansoul Dan L Nicolae Judy H Cho Richard H Duerr John D Rioux Steven R Brant Mark S Silverberg Kent D Taylor M Michael Barmuda Alain Bitton Themistocles Dassopoulos Lisa Wu Datta Todd Green Anne M Griffiths Emily O Kistner Michael T Murtha Miguel D Regueiro Jerome I Rotter L Philip Schumm A Hillary Steinhart Stephen R Targan Ramnik J Xavier Cécile Libioulle Cynthia Sandor Mark Lathrop Jacques Belaiche Olivier Dewit Ivo Gut Simon Heath Debby Laukens Myriam Mni Paul Rutgeerts André Van Gossum Diana Zelenika Denis Franchimont J P Hugot Martine de Vos Severine Vermeire Edouard Louis Lon R Cardon Carl A Anderson Hazel Drummond Elaine Nimmo Tariq Ahmad Natalie J Prescott Clive M Onnie Sheila A Fisher Jonathan Marchini Jilur Ghori Suzannah Bumpstead Rhian Gwillam Mark Tremelling Panos Delukas John Mansfield Derek Jewell Jack Satsangi Christopher G Mathew Miles Parkes Michel Georges Mark J Daly Melvin B Heyman George D Ferry Barbara Kirschner Jessica Lee Jonah Essers Richard Grand Michael Stephens Arie Levine David Piccoli John Van Limbergen Salvatore Cucchiara Dimitri S Monos Stephen L Guthery Lee Denson David C Wilson Straun F A Grant Mark Daly Mark S Silverberg Jack Satsangi Hakon Hakonarson

Nat Genet 2009 Dec 15;41(12):1335-40. Epub 2009 Nov 15.

Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1038/ng.489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267927PMC
December 2009

Inflammatory bowel disease.

N Engl J Med 2009 Nov;361(21):2066-78

Department of Internal Medicine, Section of Digestive Diseases, Yale University School of Medicine, New Haven, CT 06520, USA.

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http://www.nejm.org/doi/abs/10.1056/NEJMra0804647
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491806PMC
November 2009

IL-23 and autoimmunity: new insights into the pathogenesis of inflammatory bowel disease.

Annu Rev Med 2009 ;60:97-110

Section of Digestive Diseases, Departments of 1Medicine, Yale University, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1146/annurev.med.60.051407.123757DOI Listing
September 2009

Interleukin-23/Th17 pathways and inflammatory bowel disease.

Inflamm Bowel Dis 2009 Jul;15(7):1090-100

Department of Medicine, Digestive Diseases, Yale University, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1002/ibd.20894DOI Listing
July 2009

The genetics and immunopathogenesis of inflammatory bowel disease.

Authors:
Judy H Cho

Nat Rev Immunol 2008 Jun;8(6):458-66

Inflammatory Bowel Disease Center, Section of Digestive Diseases, Yale University, 333 Cedar Street, LMP 1080, New Haven, Connecticut 06520, USA.

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http://www.nature.com/articles/nri2340
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June 2008

Inflammatory bowel disease: genetic and epidemiologic considerations.

Authors:
Judy H Cho

World J Gastroenterol 2008 Jan;14(3):338-47

Inflammatory Bowel Disease Center, Yale University, 300 Cedar Street, New Haven, CT 06519, USA.

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http://dx.doi.org/10.3748/wjg.14.338DOI Listing
January 2008