Publications by authors named "Judith A Blake"

88Publications

Integrating image caption information into biomedical document classification in support of biocuration.

Database (Oxford) 2020 01;2020

The Computational Biomedicine and Machine Learning Lab, Department of Computer & Information Sciences, University of Delaware, 18 Amstel Ave, Newark, DE 19716, USA.

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http://dx.doi.org/10.1093/database/baaa024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7159034PMC
January 2020

Mouse Genome Database (MGD) 2019.

Nucleic Acids Res 2019 01;47(D1):D801-D806

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323923PMC
January 2019

Sensing the cilium, digital capture of ciliary data for comparative genomics investigations.

Cilia 2018 19;7. Epub 2018 Apr 19.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609 USA.

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http://dx.doi.org/10.1186/s13630-018-0057-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5907423PMC
April 2018

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology.

Circ Genom Precis Med 2018 02;11(2):e001813

From the Institute of Cardiovascular Science (R.C.L., V.K.K., R.E.F., N.H.C., R.P.H., P.J.T., P.D.L., P.M.E., L.C.) and Metabolism and Experimental Therapeutics, Division of Medicine (R.B.), University College London, United Kingdom; European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, United Kingdom (P.R., D.O.-S.); Gene Ontology Consortium (P.R., T.Z.B., D.O.-S., J.A.B., D.P.H.); The Zebrafish Model Organism Database, University of Oregon, Eugene (D.G.H.); Rat Genome Database, Human Molecular Genetics Center, Medical College of Wisconsin, Milwaukee (S.J.F.L.); Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA (T.Z.B.); FlyBase, University of Cambridge, United Kingdom (S.T.); Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME (J.A.B., D.P.H.); Oxbridge BHF Centre of Regenerative Medicine, Department of Physiology, Anatomy and Genetics, University of Oxford, United Kingdom (P.R.R.); and William Harvey Heart Centre, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, United Kingdom (A.T.).

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http://dx.doi.org/10.1161/CIRCGEN.117.001813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5821137PMC
February 2018

Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse.

Nucleic Acids Res 2018 01;46(D1):D836-D842

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkx1006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753350PMC
January 2018

Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse.

Nucleic Acids Res 2017 01 28;45(D1):D723-D729. Epub 2016 Nov 28.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkw1040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210536PMC
January 2017

Modeling biochemical pathways in the gene ontology.

Database (Oxford) 2016 1;2016. Epub 2016 Sep 1.

The Jackson Laboratory, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/database/baw126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009323PMC
November 2017

Mouse genome database 2016.

Nucleic Acids Res 2016 Jan 17;44(D1):D840-7. Epub 2015 Nov 17.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkv1211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702860PMC
January 2016

Mouse Genome Informatics (MGI): reflecting on 25 years.

Mamm Genome 2015 Aug 4;26(7-8):272-84. Epub 2015 Aug 4.

Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, 04609, USA,

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http://dx.doi.org/10.1007/s00335-015-9589-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4534491PMC
August 2015

Application of comparative biology in GO functional annotation: the mouse model.

Mamm Genome 2015 Oct 4;26(9-10):574-83. Epub 2015 Jul 4.

The Jackson Laboratory, Bar Harbor, ME, 04609, USA.

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http://dx.doi.org/10.1007/s00335-015-9580-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602061PMC
October 2015

Finding our way through phenotypes.

PLoS Biol 2015 Jan 6;13(1):e1002033. Epub 2015 Jan 6.

Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1002033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285398PMC
January 2015

Methodology for the inference of gene function from phenotype data.

BMC Bioinformatics 2014 Dec 12;15:405. Epub 2014 Dec 12.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA.

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http://dx.doi.org/10.1186/s12859-014-0405-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4302099PMC
December 2014

Standardized description of scientific evidence using the Evidence Ontology (ECO).

Database (Oxford) 2014 22;2014. Epub 2014 Jul 22.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Saccharomyces Genome Database, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK, Department of Epidemiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USAInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Saccharomyces Genome Database, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK, Department of Epidemiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1093/database/bau075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105709PMC
February 2015

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

DFLAT: functional annotation for human development.

BMC Bioinformatics 2014 Feb 7;15:45. Epub 2014 Feb 7.

Department of Computer Science, Tufts University, 155 College Ave, Medford, MA 02155, USA.

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http://dx.doi.org/10.1186/1471-2105-15-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928322PMC
February 2014

Pax genes: regulators of lineage specification and progenitor cell maintenance.

Development 2014 Feb;141(4):737-51

School of Medical Sciences, Edith Cowan University, Joondalup, WA 6027, Australia.

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http://dx.doi.org/10.1242/dev.091785DOI Listing
February 2014

The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse.

Nucleic Acids Res 2014 Jan 26;42(Database issue):D810-7. Epub 2013 Nov 26.

Bioinformatics and Computational Biology, The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkt1225DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964950PMC
January 2014

Protein Ontology: a controlled structured network of protein entities.

Nucleic Acids Res 2014 Jan 21;42(Database issue):D415-21. Epub 2013 Nov 21.

Protein Information Resource, Georgetown University Medical Center, WA 20007, USA, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA, Department of Bioinformatics and Computational Biology, The Jackson Laboratory, Bar Harbor, ME 04609, USA, Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, NY 10016, USA, Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, Buffalo, NY 14203, USA, Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY 14203, USA, Department of Immunology, Duke University Medical Center, Durham, NC 27705, USA and Department of Oral Diagnostic Sciences, University at Buffalo School of Dental Medicine, Buffalo, NY 14214, USA.

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http://dx.doi.org/10.1093/nar/gkt1173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964965PMC
January 2014

Ten quick tips for using the gene ontology.

Authors:
Judith A Blake

PLoS Comput Biol 2013 14;9(11):e1003343. Epub 2013 Nov 14.

Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, Maine, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3828149PMC
July 2014

Ontology based molecular signatures for immune cell types via gene expression analysis.

BMC Bioinformatics 2013 Aug 30;14:263. Epub 2013 Aug 30.

Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, 100 High Street, Buffalo, NY 14203, USA.

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http://dx.doi.org/10.1186/1471-2105-14-263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844401PMC
August 2013

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.

Database (Oxford) 2013 27;2013:bat062. Epub 2013 Aug 27.

Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, NTNU, N-7489 Trondheim, Norway.

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http://dx.doi.org/10.1093/database/bat062DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753819PMC
March 2014

The characterisation of Pax3 expressant cells in adult peripheral nerve.

PLoS One 2013 19;8(3):e59184. Epub 2013 Mar 19.

School of Medical Science, Edith Cowan University, Joondalup, Western Australia, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0059184PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3602598PMC
September 2013

The mouse genome database: genotypes, phenotypes, and models of human disease.

Nucleic Acids Res 2013 Jan 21;41(Database issue):D885-91. Epub 2012 Nov 21.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609 USA.

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http://dx.doi.org/10.1093/nar/gks1115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531104PMC
January 2013

Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database.

Database (Oxford) 2012 29;2012:bas045. Epub 2012 Oct 29.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/database/bas045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483533PMC
April 2013

Concept annotation in the CRAFT corpus.

BMC Bioinformatics 2012 Jul 9;13:161. Epub 2012 Jul 9.

Department of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.

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http://dx.doi.org/10.1186/1471-2105-13-161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3476437PMC
July 2012

Disease model curation improvements at Mouse Genome Informatics.

Database (Oxford) 2012 20;2012:bar063. Epub 2012 Mar 20.

Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/database/bar063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308153PMC
June 2012

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.

PLoS Comput Biol 2012 16;8(2):e1002386. Epub 2012 Feb 16.

Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Los Angeles, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1002386DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3280971PMC
June 2012

Providing the missing link: the exposure science ontology ExO.

Environ Sci Technol 2012 Mar 12;46(6):3046-53. Epub 2012 Mar 12.

North Carolina State University, Raleigh, North Carolina 27695, United States.

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http://dx.doi.org/10.1021/es2033857DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3314380PMC
March 2012

The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse.

Nucleic Acids Res 2012 Jan 10;40(Database issue):D881-6. Epub 2011 Nov 10.

The Jackson Laboratory, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkr974DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245042PMC
January 2012

Autism candidate genes via mouse phenomics.

J Biomed Inform 2011 Dec 21;44 Suppl 1:S5-11. Epub 2011 Mar 21.

The Jackson Laboratory, 600 Main St., Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1016/j.jbi.2011.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263820PMC
December 2011

The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics.

Nucleic Acids Res 2011 Jan 3;39(Database issue):D842-8. Epub 2010 Nov 3.

The Jackson Laboratory, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkq1008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013640PMC
January 2011

The Mouse Genome Database: enhancements and updates.

Nucleic Acids Res 2010 Jan 27;38(Database issue):D586-92. Epub 2009 Oct 27.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609 USA.

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http://dx.doi.org/10.1093/nar/gkp880DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808942PMC
January 2010

The Mouse Genome Database genotypes::phenotypes.

Nucleic Acids Res 2009 Jan 3;37(Database issue):D712-9. Epub 2008 Nov 3.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkn886DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686566PMC
January 2009

The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis.

Curr Protoc Bioinformatics 2008 Sep;Chapter 7:Unit 7.2

The Jackson Laboratory, Bar Harbor, Maine, USA.

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http://dx.doi.org/10.1002/0471250953.bi0702s23DOI Listing
September 2008

Perplexing Pax: from puzzle to paradigm.

Dev Dyn 2008 Oct;237(10):2791-803

School of Exercise Biomedical and Health Science, Edith Cowan University, Joondalup, Western Australia.

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http://dx.doi.org/10.1002/dvdy.21711DOI Listing
October 2008

Access to immunology through the Gene Ontology.

Immunology 2008 Oct;125(2):154-60

Department of Medicine, University College London, Rayne Institute, London, UK.

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http://dx.doi.org/10.1111/j.1365-2567.2008.02940.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561138PMC
October 2008

The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis.

Curr Protoc Bioinformatics 2002 Nov;Chapter 7:Unit 7.2

The Jackson Laboratory, Bar Harbor, Maine, USA.

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http://doi.wiley.com/10.1002/0471250953.bi0702s00
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http://dx.doi.org/10.1002/0471250953.bi0702s00DOI Listing
November 2002

An en masse phenotype and function prediction system for Mus musculus.

Genome Biol 2008 27;9 Suppl 1:S8. Epub 2008 Jun 27.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Longwood Avenue, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1186/gb-2008-9-s1-s8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447542PMC
August 2008

Gene Ontology annotations: what they mean and where they come from.

BMC Bioinformatics 2008 Apr 29;9 Suppl 5:S2. Epub 2008 Apr 29.

The Jackson Laboratory, Bar Harbor, ME, USA.

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http://dx.doi.org/10.1186/1471-2105-9-S5-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367625PMC
April 2008

The Mouse Genome Database (MGD): mouse biology and model systems.

Nucleic Acids Res 2008 Jan 23;36(Database issue):D724-8. Epub 2007 Dec 23.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://nar.oxfordjournals.org/content/36/suppl_1/D724.full.p
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkm961
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http://dx.doi.org/10.1093/nar/gkm961DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238849PMC
January 2008

Mouse genome informatics (MGI) resources for pathology and toxicology.

Toxicol Pathol 2007 Apr;35(3):456-7

The Jackson Laboratory, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1080/01926230701310536DOI Listing
April 2007

Ontology development for biological systems: immunology.

Bioinformatics 2007 Apr 31;23(7):913-5. Epub 2007 Jan 31.

Mouse Genome Informatics, The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04605, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm029DOI Listing
April 2007

The mouse genome database (MGD): new features facilitating a model system.

Nucleic Acids Res 2007 Jan 29;35(Database issue):D630-7. Epub 2006 Nov 29.

The Jackson Laboratory 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkl940DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1751527PMC
January 2007

Beyond the data deluge: data integration and bio-ontologies.

J Biomed Inform 2006 Jun 21;39(3):314-20. Epub 2006 Feb 21.

The Jackson Laboratory, Bar Harbor, ME, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153204640600019
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http://dx.doi.org/10.1016/j.jbi.2006.01.003DOI Listing
June 2006

The Mouse Genome Database (MGD): updates and enhancements.

Nucleic Acids Res 2006 Jan;34(Database issue):D562-7

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/nar/gkj085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347448PMC
January 2006

Pax3 transcripts in melanoblast development.

Dev Growth Differ 2005 Dec;47(9):627-35

School of Exercise, Biomedical and Health Science, Edith Cowan University, 100 Joondalup Drive, Joondalup, Western Australia 6027, Australia.

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http://doi.wiley.com/10.1111/j.1440-169X.2005.00835.x
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http://dx.doi.org/10.1111/j.1440-169X.2005.00835.xDOI Listing
December 2005

A procedure for assessing GO annotation consistency.

Bioinformatics 2005 Jun;21 Suppl 1:i136-43

Mouse Genome Informatics [MGI], The Jackson Laboratory 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1093/bioinformatics/bti1019DOI Listing
June 2005

Ontological visualization of protein-protein interactions.

BMC Bioinformatics 2005 Feb 11;6:29. Epub 2005 Feb 11.

Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME, USA.

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http://dx.doi.org/10.1186/1471-2105-6-29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC550656PMC
February 2005

MGD: the Mouse Genome Database.

Nucleic Acids Res 2003 Jan;31(1):193-5

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165494PMC
http://dx.doi.org/10.1093/nar/gkg047DOI Listing
January 2003

Corralling conditional mutations: a unified resource for mouse phenotypes.

Genesis 2002 Feb;32(2):63-5

The Jackson Laboratory, 600 Main Street, Bar Harbor, Maine 04609, USA.

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http://dx.doi.org/10.1002/gene.10055DOI Listing
February 2002

The Mouse Genome Database (MGD): the model organism database for the laboratory mouse.

Nucleic Acids Res 2002 Jan;30(1):113-5

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99116PMC
http://dx.doi.org/10.1093/nar/30.1.113DOI Listing
January 2002