Juan Cui

Juan Cui

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Juan Cui

Juan Cui

Publications by authors named "Juan Cui"

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82Publications

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Human body-fluid proteome: quantitative profiling and computational prediction.

Brief Bioinform 2020 Feb 5. Epub 2020 Feb 5.

Department of Computer Science and Engineering in the University of Nebraska-Lincoln.

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http://dx.doi.org/10.1093/bib/bbz160DOI Listing
February 2020

Dietary bovine milk exosomes elicit changes in bacterial communities in C57BL/6 mice.

Am J Physiol Gastrointest Liver Physiol 2019 Nov 11;317(5):G618-G624. Epub 2019 Sep 11.

Department of Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska.

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http://dx.doi.org/10.1152/ajpgi.00160.2019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6879888PMC
November 2019

Identification of age- and gender-associated long noncoding RNAs in the human brain with Alzheimer's disease.

Neurobiol Aging 2019 09 6;81:116-126. Epub 2019 Jun 6.

Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, Omaha, NE, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neurobiolaging.2019.05.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6732230PMC
September 2019

Three-Dimensional Autofocusing Visual Feedback for Automated Rare Cells Sorting in Fluorescence Microscopy.

Micromachines (Basel) 2019 Aug 27;10(9). Epub 2019 Aug 27.

Beijing Advanced Innovation Center for Intelligent Robots and Systems, Beijing Institute of Technology, Beijing 100081, China.

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http://dx.doi.org/10.3390/mi10090567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6780806PMC
August 2019

Circulating microRNA trafficking and regulation: computational principles and practice.

Authors:
Juan Cui Jiang Shu

Brief Bioinform 2019 Aug 28. Epub 2019 Aug 28.

Systems Biology and Biomedical Informatics Laboratory, Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, USA.

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https://academic.oup.com/bib/advance-article/doi/10.1093/bib
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http://dx.doi.org/10.1093/bib/bbz079DOI Listing
August 2019

3D Construction of Shape-Controllable Tissues through Self-Bonding of Multicellular Microcapsules.

ACS Appl Mater Interfaces 2019 Jul 18;11(26):22950-22961. Epub 2019 Jun 18.

Intelligent Robotics Institute, School of Mechatronical Engineering , Beijing Institute of Technology , 5 South Zhongguancun Street , Haidian District, Beijing 100081 , China.

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http://dx.doi.org/10.1021/acsami.9b05108DOI Listing
July 2019

Magnetic Micromachine Using Nickel Nanoparticles for Propelling and Releasing in Indirect Assembly of Cell-Laden Micromodules.

Micromachines (Basel) 2019 Jun 1;10(6). Epub 2019 Jun 1.

Intelligent Robotics Institute, School of Mechatronical Engineering, Beijing Institute of Technology, 5 South Zhongguancun Street, Haidian District, Beijing 100081, China.

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http://dx.doi.org/10.3390/mi10060370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6631220PMC
June 2019

Multicellular Co-Culture in Three-Dimensional Gelatin Methacryloyl Hydrogels for Liver Tissue Engineering.

Molecules 2019 May 7;24(9). Epub 2019 May 7.

Intelligent Robotics Institute, School of Mechatronical Engineering, Beijing Institute of Technology, 5 South Zhongguancun Street, Haidian District, Beijing 100081, China.

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http://dx.doi.org/10.3390/molecules24091762DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6539120PMC
May 2019

Comparative Transcriptome Analysis of Megacopta cribraria (Hemiptera: Plataspidae) in Response to High-Temperature Stress.

J Econ Entomol 2019 02;112(1):407-415

College of Agriculture, Jilin Agricultural University, Changchun, PR China.

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https://academic.oup.com/jee/advance-article/doi/10.1093/jee
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http://dx.doi.org/10.1093/jee/toy330DOI Listing
February 2019

Astrocyte EV-Induced lincRNA-Cox2 Regulates Microglial Phagocytosis: Implications for Morphine-Mediated Neurodegeneration.

Mol Ther Nucleic Acids 2018 Dec 29;13:450-463. Epub 2018 Sep 29.

Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, Omaha, NE 68198-5880, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S21622531183026
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http://dx.doi.org/10.1016/j.omtn.2018.09.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6202788PMC
December 2018

Fabrication of perfusable 3D hepatic lobule-like constructs through assembly of multiple cell type laden hydrogel microstructures.

Biofabrication 2018 12 27;11(1):015016. Epub 2018 Dec 27.

Intelligent Robotics Institute, School of Mechatronical Engineering, Beijing Institute of Technology, 5 South Zhongguancun Street, Haidian District, Beijing 100081, People's Republic of China.

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http://dx.doi.org/10.1088/1758-5090/aaf3c9DOI Listing
December 2018

A diet defined by its content of bovine milk exosomes and their RNA cargos has moderate effects on gene expression, amino acid profiles and grip strength in skeletal muscle in C57BL/6 mice.

J Nutr Biochem 2018 09 12;59:123-128. Epub 2018 Jun 12.

Department of Nutrition & Health Sciences, University of Nebraska-Lincoln, 110 Leverton Hall, 1700 North 35(th) Street, Lincoln, NE 68583-0806, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jnutbio.2018.06.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6129415PMC
September 2018

Reply to B Fromm et al.

J Nutr 2018 09;148(9):1508

Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, NE.

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http://dx.doi.org/10.1093/jn/nxy145DOI Listing
September 2018

Genome-scale MicroRNA target prediction through clustering with Dirichlet process mixture model.

BMC Genomics 2018 Sep 24;19(Suppl 7):658. Epub 2018 Sep 24.

Systems Biology and Biomedical Informatics (SBBI) Laboratory, Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.

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https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
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http://dx.doi.org/10.1186/s12864-018-5029-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157162PMC
September 2018

Analysis of genetic and nongenetic factors influencing triglycerides-lowering drug effects based on paired observations.

BMC Proc 2018 17;12(Suppl 9):46. Epub 2018 Sep 17.

1Department of Statistics, University of Nebraska, 340 Hardin Hall North Wing, Lincoln, NE 68588 USA.

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http://dx.doi.org/10.1186/s12919-018-0153-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157156PMC
September 2018

Effect of Temperature on the Development, Survival, and Fecundity of Heliothis viriplaca (Lepidoptera: Noctuidae).

J Econ Entomol 2018 08;111(4):1940-1946

College of Agriculture, Jilin Agricultural University, Changchun, PR China.

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http://dx.doi.org/10.1093/jee/toy151DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6074835PMC
August 2018

miRDis: a Web tool for endogenous and exogenous microRNA discovery based on deep-sequencing data analysis.

Brief Bioinform 2018 05;19(3):415-424

Systems Biology and Biomedical Informatics (SBBI) Laboratory, Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.

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http://dx.doi.org/10.1093/bib/bbw140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952930PMC
May 2018

Expression of the microRNA-143/145 cluster is decreased in hepatitis B virus-associated hepatocellular carcinoma and may serve as a biomarker for tumorigenesis in patients with chronic hepatitis B.

Oncol Lett 2018 May 26;15(5):6115-6122. Epub 2018 Feb 26.

Department of Gastroenterology, Shandong Provincial Hospital Affiliated to Shandong University, Jinan, Shandong 250021, P.R. China.

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http://dx.doi.org/10.3892/ol.2018.8117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5876422PMC
May 2018

Structural modeling and mutagenesis of endo-β-N-acetylglucosaminidase from Ogataea minuta identifies the importance of Trp295 for hydrolytic activity.

J Biosci Bioeng 2018 Feb 11;125(2):168-174. Epub 2017 Sep 11.

Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-8568, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S13891723173057
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http://dx.doi.org/10.1016/j.jbiosc.2017.08.014DOI Listing
February 2018

The regional variation of denitrification phenotypes under anoxic incubation with soils from eight forested catchments in different climate zones of China.

Sci Total Environ 2018 Feb 2;615:319-329. Epub 2017 Oct 2.

Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China.

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http://dx.doi.org/10.1016/j.scitotenv.2017.09.251DOI Listing
February 2018

A systematic approach to RNA-associated motif discovery.

BMC Genomics 2018 02 14;19(1):146. Epub 2018 Feb 14.

Systems Biology and Biomedical Informatics (SBBI) Laboratory, Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.

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http://dx.doi.org/10.1186/s12864-018-4528-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813387PMC
February 2018

Assembly of RGD-Modified Hydrogel Micromodules into Permeable Three-Dimensional Hollow Microtissues Mimicking in Vivo Tissue Structures.

ACS Appl Mater Interfaces 2017 Dec 21;9(48):41669-41679. Epub 2017 Nov 21.

Intelligent Robotics Institute, School of Mechatronical Engineering, Beijing Institute of Technology , 5 South Zhongguancun Street, Haidian District, Beijing 100081, China.

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http://dx.doi.org/10.1021/acsami.7b10960DOI Listing
December 2017

Carbon adsorption on doped cementite surfaces for effective catalytic growth of diamond-like carbon: a first-principles study.

Phys Chem Chem Phys 2017 Dec;19(48):32341-32348

National Key Laboratory for Precision Hot Processing of Metals, School of Materials Science and Engineering, Harbin Institute of Technology, Harbin 150001, P. R. China.

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http://dx.doi.org/10.1039/c7cp06598aDOI Listing
December 2017

The Roles of Glycodelin in Cancer Development and Progression.

Front Immunol 2017 29;8:1685. Epub 2017 Nov 29.

Qilu Hospital of Shandong University, Jinan, Shandong, China.

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http://dx.doi.org/10.3389/fimmu.2017.01685DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712544PMC
November 2017

Dynamic and Modularized MicroRNA Regulation and Its Implication in Human Cancers.

Sci Rep 2017 10 17;7(1):13356. Epub 2017 Oct 17.

Systems Biology and Biomedical Informatics (SBBI) Laboratory, Department of Computer Science and Engineering, Lincoln, NE, 68588, USA.

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http://dx.doi.org/10.1038/s41598-017-13470-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5645395PMC
October 2017

Effect of Straw Amendment on Soil Zn Availability and Ageing of Exogenous Water-Soluble Zn Applied to Calcareous Soil.

PLoS One 2017 12;12(1):e0169776. Epub 2017 Jan 12.

College of Natural Resources and Environment, Northwest A&F University, Key Lab of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, Yangling, Shaanxi, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0169776PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5230769PMC
August 2017

A Survey on Automated Food Monitoring and Dietary Management Systems.

J Health Med Inform 2017 15;8(3). Epub 2017 Jul 15.

Department of Computer Science and Engineering, University of Nebraska-Lincoln, NE, USA.

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http://dx.doi.org/10.4172/2157-7420.1000272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6086355PMC
July 2017

Aberrant expression of microRNA induced by high-fructose diet: implications in the pathogenesis of hyperlipidemia and hepatic insulin resistance.

J Nutr Biochem 2017 05 20;43:125-131. Epub 2017 Feb 20.

The Department of Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, NE 68583-0806, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jnutbio.2017.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5406276PMC
May 2017

Temporal variability of ammonia emission potentials for six plant species in an evergreen subtropical forest in southwest China.

Environ Sci Pollut Res Int 2017 Apr 13;24(11):10808-10818. Epub 2017 Mar 13.

State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China.

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http://dx.doi.org/10.1007/s11356-017-8650-0DOI Listing
April 2017

Nutrition, microRNAs, and Human Health.

Adv Nutr 2017 01 17;8(1):105-112. Epub 2017 Jan 17.

Department of Nutrition and Health Sciences, University of Nebraska-Lincoln, Lincoln, NE;

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http://dx.doi.org/10.3945/an.116.013839DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5227982PMC
January 2017

Computational Characterization of Exogenous MicroRNAs that Can Be Transferred into Human Circulation.

PLoS One 2015 3;10(11):e0140587. Epub 2015 Nov 3.

Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140587PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631372PMC
June 2016

Dietary MicroRNA Database (DMD): An Archive Database and Analytic Tool for Food-Borne microRNAs.

PLoS One 2015 1;10(6):e0128089. Epub 2015 Jun 1.

Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128089PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4451068PMC
April 2016

Gene regulation by dietary microRNAs.

Can J Physiol Pharmacol 2015 Dec 14;93(12):1097-102. Epub 2015 Apr 14.

b Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.

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http://dx.doi.org/10.1139/cjpp-2014-0392DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743494PMC
December 2015

Human Absorbable MicroRNA Prediction based on an Ensemble Manifold Ranking Model.

Proceedings (IEEE Int Conf Bioinformatics Biomed) 2015 Nov 17;2015:295-300. Epub 2015 Dec 17.

Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE, United States.

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http://ieeexplore.ieee.org/document/7359697/
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http://dx.doi.org/10.1109/BIBM.2015.7359697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6223015PMC
November 2015

Capacitive Micromachined Ultrasonic Transducers (CMUTs) for Underwater Imaging Applications.

Sensors (Basel) 2015 Sep 15;15(9):23205-17. Epub 2015 Sep 15.

Key Laboratory of Instrumentation Science & Dynamic Measurement, Ministry of Education, North University of China, Taiyuan 030051, China.

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http://www.mdpi.com/1424-8220/15/9/23205
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http://dx.doi.org/10.3390/s150923205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610594PMC
September 2015

Mild hypothermia inhibits systemic and cerebral complement activation in a swine model of cardiac arrest.

J Cereb Blood Flow Metab 2015 Aug 11;35(8):1289-95. Epub 2015 Mar 11.

Department of Emergency, Beijing Chaoyang Hospital affiliated to Capital Medical University, Beijing, China.

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http://dx.doi.org/10.1038/jcbfm.2015.41DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4528002PMC
August 2015

Comprehensive characterization of the genomic alterations in human gastric cancer.

Int J Cancer 2015 Jul 3;137(1):86-95. Epub 2014 Dec 3.

Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE; Department of Biochemistry and Molecular Biology, Computational Systems Biology Laboratory, Institute of Bioinformatics, University of Georgia, Athens, GA.

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http://dx.doi.org/10.1002/ijc.29352DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4776643PMC
July 2015

Two new dendrocandins with neurite outgrowth-promoting activity from Dendrobium officinale.

J Asian Nat Prod Res 2015 7;17(2):125-31. Epub 2014 Oct 7.

a State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences , Kunming 650201 , China.

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http://dx.doi.org/10.1080/10286020.2014.942294DOI Listing
June 2015

Development, Survival, and Reproduction of Megacopta cribraria (Heteroptera: Plataspidae) at Different Constant Temperatures.

J Econ Entomol 2014 12;107(6):2061-6

College of Agronomy, Jilin Agricultural University, Changchun 130118, China

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http://dx.doi.org/10.1603/EC14287DOI Listing
December 2014

MiR-137 regulates epithelial-mesenchymal transition in gastrointestinal stromal tumor.

Tumour Biol 2014 Sep 12;35(9):9131-8. Epub 2014 Jun 12.

Department of Gastrointestinal Surgery, Xiangya Hospital of Central South University, Changsha, Hunan, 410008, China.

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http://dx.doi.org/10.1007/s13277-014-2177-5DOI Listing
September 2014

Computational prediction of human salivary proteins from blood circulation and application to diagnostic biomarker identification.

PLoS One 2013 12;8(11):e80211. Epub 2013 Nov 12.

Key Laboratory for Symbolic Computation and Knowledge Engineering of the Ministry of Education, College of Computer Science and Technology, Jilin University, Changchun, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0080211PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3855806PMC
July 2014

Protective effects of penehyclidine hydrochloride on acute lung injury caused by severe dichlorvos poisoning in swine.

Chin Med J (Engl) 2013 ;126(24):4764-70

Department of Occupational Poisonings, Beijng Chaoyang Hospital, Capital Medical University, Beijing 100020, China.

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June 2014

Microarray-based transcriptome profiling of ovarian cancer cells.

Methods Mol Biol 2013 ;1049:119-37

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.

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http://dx.doi.org/10.1007/978-1-62703-547-7_11DOI Listing
March 2014

Elucidation of how cancer cells avoid acidosis through comparative transcriptomic data analysis.

PLoS One 2013 14;8(8):e71177. Epub 2013 Aug 14.

Computational Systems Biology Lab, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0071177PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743895PMC
March 2014

iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis.

Bioinformatics 2014 Mar 3;30(5):737-9. Epub 2013 Oct 3.

Department of Bioinformatics, School of Life Science and Technology, Tongji University, Siping Rd. No. 1239, Shanghai 200092, Department of Computer Science, Hefei University of Technology, Tunxi Rd. No. 193, Hefei 230009, China and Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt576DOI Listing
March 2014

A phylogenetic model for understanding the effect of gene duplication on cancer progression.

Nucleic Acids Res 2014 Mar 25;42(5):2870-8. Epub 2013 Dec 25.

Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, Department of Statistics, University of Georgia, Athens, GA 30602, USA, Department of Molecular Biology, University of Wyoming, Laramie, WY 82071, USA, Department of Biostatistics, Georgia Southern University, Statesboro, GA 30458, USA, School of Mathematics, Shandong University, Jinan 250100, China, Department of Computer Science and Engineering, University of Nebraska-Lincoln, Lincoln, NE 65888, USA, BioEnergy Science Center, Oak Ridge, TN 37830, USA and College of Computer Science and Technology, Jilin University, Changchun, Jilin, China.

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http://dx.doi.org/10.1093/nar/gkt1320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3950708PMC
March 2014

Hypothermia-induced neuroprotection is associated with reduced mitochondrial membrane permeability in a swine model of cardiac arrest.

J Cereb Blood Flow Metab 2013 Jun 13;33(6):928-34. Epub 2013 Mar 13.

Department of Emergency, First Hospital affiliated to Dalian Medical University, Dalian, China.

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http://dx.doi.org/10.1038/jcbfm.2013.33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3677114PMC
June 2013

The endothelial lipase protein is promising urinary biomarker for diagnosis of gastric cancer.

Diagn Pathol 2013 Mar 19;8:45. Epub 2013 Mar 19.

Department of Pathogeny Biology, Norman Bethune Medical College of Jilin University, Changchun, Jilin, China.

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http://dx.doi.org/10.1186/1746-1596-8-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621381PMC
March 2013

Systems biology in the frontier of cancer research: a report of the Second International Workshop of Cancer Systems Biology.

Chin J Cancer 2012 Sep 28;31(9):409-12. Epub 2012 Aug 28.

Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602-7229, USA.

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http://dx.doi.org/10.5732/cjc.012.10205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777507PMC
September 2012

Aberrant expression of microRNAs in gastric cancer and biological significance of miR-574-3p.

Int Immunopharmacol 2012 Aug 7;13(4):468-75. Epub 2012 Jun 7.

Department of Pathogenobiology, Jilin University, Changchun, Jilin, China.

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http://dx.doi.org/10.1016/j.intimp.2012.05.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3389336PMC
August 2012

Molecular mechanisms of therapeutic hypothermia on neurological function in a swine model of cardiopulmonary resuscitation.

Resuscitation 2012 Jul 12;83(7):913-20. Epub 2012 Jan 12.

Department of Emergency, Beijing Chaoyang Hospital, Capital Medical University, Beijing, China.

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http://dx.doi.org/10.1016/j.resuscitation.2012.01.001DOI Listing
July 2012

A comparative study of gene-expression data of basal cell carcinoma and melanoma reveals new insights about the two cancers.

PLoS One 2012 25;7(1):e30750. Epub 2012 Jan 25.

Department of Biochemistry and Molecular Biology and Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0030750PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266277PMC
June 2012

[Effects of returning maize straw into field on the Zn forms and their availability in a calcareous soil].

Ying Yong Sheng Tai Xue Bao 2011 Dec;22(12):3221-6

Key Laboratory of plant Nutrition and the Agri-enivronment in Northwest China, College of Resources and Environment, Northwest A & F University, Yangling 712100, Shaanxi, China.

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December 2011

MicroRNA expression and regulation in human ovarian carcinoma cells by luteinizing hormone.

PLoS One 2011 12;6(7):e21730. Epub 2011 Jul 12.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0021730PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3134471PMC
November 2011

Regulation of gene expression in ovarian cancer cells by luteinizing hormone receptor expression and activation.

BMC Cancer 2011 Jun 28;11:280. Epub 2011 Jun 28.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1186/1471-2407-11-280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141782PMC
June 2011

Gene-expression signatures can distinguish gastric cancer grades and stages.

PLoS One 2011 Mar 18;6(3):e17819. Epub 2011 Mar 18.

Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017819PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060867PMC
March 2011

Identification of potential predictors for subtype IgA nephropathy through analyses of blood biochemical indicators.

Clin Chim Acta 2011 Feb 26;412(5-6):441-5. Epub 2010 Nov 26.

Department of Clinical Biochemistry, Chinese PLA General Hospital, Beijing, China.

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http://dx.doi.org/10.1016/j.cca.2010.11.020DOI Listing
February 2011

A computational method for prediction of excretory proteins and application to identification of gastric cancer markers in urine.

PLoS One 2011 Feb 18;6(2):e16875. Epub 2011 Feb 18.

Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016875PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041827PMC
February 2011

The Trypanosoma brucei MitoCarta and its regulation and splicing pattern during development.

Nucleic Acids Res 2010 Nov 26;38(21):7378-87. Epub 2010 Jul 26.

Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing, Jiangsu 210016 China.

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http://dx.doi.org/10.1093/nar/gkq618DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2995047PMC
November 2010

A comparative analysis of gene-expression data of multiple cancer types.

PLoS One 2010 Oct 27;5(10):e13696. Epub 2010 Oct 27.

Department of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, Athens, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0013696PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2965162PMC
October 2010

Genome-wide association study of esophageal squamous cell carcinoma in Chinese subjects identifies susceptibility loci at PLCE1 and C20orf54.

Authors:
Li-Dong Wang Fu-You Zhou Xue-Min Li Liang-Dan Sun Xin Song Yan Jin Jiang-Man Li Guo-Qiang Kong Hong Qi Juan Cui Lian-Qun Zhang Jie-Zhi Yang Ji-Lin Li Xing-Chuan Li Jing-Li Ren Zhi-Cai Liu Wen-Jun Gao Ling Yuan Wu Wei Yan-Rui Zhang Wei-Peng Wang Ilyar Sheyhidin Feng Li Bao-Ping Chen Shu-Wei Ren Bin Liu Dan Li Jian-Wei Ku Zong-Min Fan Sheng-Li Zhou Zhi-Gang Guo Xue-Ke Zhao Na Liu Yong-Hong Ai Fang-Fang Shen Wen-Yan Cui Shuang Song Tao Guo Jing Huang Chao Yuan Jia Huang Yue Wu Wen-Bin Yue Chang-Wei Feng Hong-Lei Li Yan Wang Jin-Ya Tian Yue Lu Yi Yuan Wen-Liang Zhu Min Liu Wen-Jing Fu Xia Yang Han-Jing Wang Suo-Li Han Jie Chen Min Han Hai-Yan Wang Peng Zhang Xiu-Min Li Jin-Cheng Dong Guo-Lan Xing Ran Wang Ming Guo Zhi-Wei Chang Hai-Lin Liu Li Guo Zhi-Qing Yuan Hai Liu Qin Lu Liu-Qin Yang Fu-Guo Zhu Xiu-Feng Yang Xiao-Shan Feng Zhou Wang Yin Li She-Gan Gao Qirenwang Qige Long-Tang Bai Wen-Jun Yang Guang-Yan Lei Zhong-Ying Shen Long-Qi Chen En-Min Li Li-Yan Xu Zhi-Yong Wu Wei-Ke Cao Jian-Po Wang Zhi-Qin Bao Ji-Li Chen Guang-Cheng Ding Xiang Zhuang Ying-Fa Zhou Hou-Feng Zheng Zheng Zhang Xian-Bo Zuo Zi-Ming Dong Dong-Mei Fan Xin He Jin Wang Qi Zhou Qin-Xian Zhang Xin-Ying Jiao Shi-Yong Lian Ai-Fang Ji Xiao-Mei Lu Jin-Sheng Wang Fu-Bao Chang Chang-Dong Lu Zhi-Guo Chen Jian-Jun Miao Zeng-Lin Fan Ruo-Bai Lin Tai-Jiang Liu Jin-Chang Wei Qing-Peng Kong Yu Lan Yu-Jing Fan Fu-Sheng Gao Tian-Yun Wang Dong Xie Shu-Qing Chen Wan-Cai Yang Jun-Yan Hong Liang Wang Song-Liang Qiu Zhi-Ming Cai Xue-Jun Zhang

Nat Genet 2010 Sep 22;42(9):759-63. Epub 2010 Aug 22.

Cancer Research Center, Xinxiang Medical University, Xinxiang, Henan, China.

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http://dx.doi.org/10.1038/ng.648DOI Listing
September 2010

Progesterone receptor-mediated up-regulation of transthyretin in preimplantation mouse uterus.

Fertil Steril 2010 May 26;93(8):2750-3. Epub 2010 Feb 26.

Department of Physiology and Pharmacology, College of Veterinary Medicine, The University of Georgia, Athens, Georgia 30602, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S00150282100006
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http://dx.doi.org/10.1016/j.fertnstert.2010.01.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3646416PMC
May 2010

In-silico prediction of blood-secretory human proteins using a ranking algorithm.

BMC Bioinformatics 2010 May 14;11:250. Epub 2010 May 14.

Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, and Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1186/1471-2105-11-250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877692PMC
May 2010

A study of health effects of long-distance ocean voyages on seamen using a data classification approach.

BMC Med Inform Decis Mak 2010 Mar 10;10:13. Epub 2010 Mar 10.

College of Computer Science and Technology, Jilin University, Changchun, Jilin, 130012, China.

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http://dx.doi.org/10.1186/1472-6947-10-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846872PMC
March 2010

Improvement of neovascularization capacity of bone marrow mononuclear cells from diabetic mice by ex vivo pretreatment with resveratrol.

Hypertens Res 2009 Jul 15;32(7):542-7. Epub 2009 May 15.

Department of Cardiovascular Medicine, Kyushu University Graduate School of Medical Sciences, Fukuoka, Japan.

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http://www.nature.com/articles/hr200967
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http://dx.doi.org/10.1038/hr.2009.67DOI Listing
July 2009

Genome-scale search of tumor-specific antigens by collective analysis of mutations, expressions and T-cell recognition.

Mol Immunol 2009 May 24;46(8-9):1824-9. Epub 2009 Feb 24.

Bioinformatics and Drug Design Group, Department of Pharmacy, and Centre for Computational Science and Engineering, National University of Singapore, Singapore 117543, Singapore.

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http://dx.doi.org/10.1016/j.molimm.2009.01.019DOI Listing
May 2009

Computational prediction of human proteins that can be secreted into the bloodstream.

Bioinformatics 2008 Oct 12;24(20):2370-5. Epub 2008 Aug 12.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2562011PMC
October 2008

Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation.

Cancer Res 2007 Oct;67(20):9996-10003

Bioinformatics and Drug Design Group, Department of Pharmacy, Center for Computational Science and Engineering, National University of Singapore, Singapore.

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http://dx.doi.org/10.1158/0008-5472.CAN-07-1601DOI Listing
October 2007

Computer prediction of allergen proteins from sequence-derived protein structural and physicochemical properties.

Mol Immunol 2007 Jan 23;44(4):514-20. Epub 2006 Mar 23.

Bioinformatics and Drug Design Group, Department of Pharmacy and Computational Science, National University of Singapore, Blk SoC 1, Level 7, 3 Science Drive 2, Singapore 117543, Singapore.

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http://dx.doi.org/10.1016/j.molimm.2006.02.010DOI Listing
January 2007

MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties.

Immunogenetics 2006 Aug 11;58(8):607-13. Epub 2006 Jul 11.

Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore, Singapore, 117543, Singapore.

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http://dx.doi.org/10.1007/s00251-006-0117-2DOI Listing
August 2006

Recent progresses in the application of machine learning approach for predicting protein functional class independent of sequence similarity.

Proteomics 2006 Jul;6(14):4023-37

Department of Computational Science, National University of Singapore, Singapore, Singapore.

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http://dx.doi.org/10.1002/pmic.200500938DOI Listing
July 2006