Publications by authors named "Juan Antonio Vizcaíno"

100Publications

Review of Issues and Solutions to Data Analysis Reproducibility and Data Quality in Clinical Proteomics.

Methods Mol Biol 2020 ;2051:345-371

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.

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http://dx.doi.org/10.1007/978-1-4939-9744-2_15DOI Listing
October 2020

Quantifying the impact of public omics data.

Nat Commun 2019 08 5;10(1):3512. Epub 2019 Aug 5.

European Molecular Biology Laboratory, EMBL-European Bioinformatics Institute (EMBL-EBI), Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1038/s41467-019-11461-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6683138PMC
August 2019

Quantitative Proteomics Data in the Public Domain: Challenges and Opportunities.

Methods Mol Biol 2019 ;1977:217-235

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK.

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http://dx.doi.org/10.1007/978-1-4939-9232-4_14DOI Listing
August 2019

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins.

J Proteome Res 2019 04 22;18(4):1477-1485. Epub 2019 Mar 22.

Research Institute of Molecular Pathology (IMP) , Vienna Biocenter (VBC) , Campus-Vienna-Biocenter 1 , 1030 Vienna , Austria.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.8b00377
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http://dx.doi.org/10.1021/acs.jproteome.8b00377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456873PMC
April 2019

Future Prospects of Spectral Clustering Approaches in Proteomics.

Proteomics 2018 07;18(14):e1700454

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1002/pmic.201700454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099476PMC
July 2018

Response to "Comparison and Evaluation of Clustering Algorithms for Tandem Mass Spectra".

J Proteome Res 2018 05 25;17(5):1993-1996. Epub 2018 Apr 25.

European Molecular Biology Laboratory , European Bioinformatics Institute (EMBL-EBI) , Wellcome Trust Genome Campus , Hinxton, Cambridge CB10 1SD , United Kingdom.

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http://dx.doi.org/10.1021/acs.jproteome.7b00824DOI Listing
May 2018

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.

Genome Biol 2018 01 31;19(1):12. Epub 2018 Jan 31.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1186/s13059-017-1377-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793360PMC
January 2018

Accurate and fast feature selection workflow for high-dimensional omics data.

PLoS One 2017 20;12(12):e0189875. Epub 2017 Dec 20.

Department of Congenital Heart Disease and Pediatric Cardiology, Universitätsklinikum Schleswig-Holstein Kiel, Kiel, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0189875PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738110PMC
January 2018

Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets.

Curr Protoc Bioinformatics 2017 09 13;59:13.31.1-13.31.12. Epub 2017 Sep 13.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1002/cpbi.30DOI Listing
September 2017

OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets.

Proteomics 2017 Oct;17(19)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201700244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707441PMC
October 2017

Synthetic human proteomes for accelerating protein research.

Nat Methods 2017 02;14(3):240-242

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK.

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http://dx.doi.org/10.1038/nmeth.4191DOI Listing
February 2017

A Golden Age for Working with Public Proteomics Data.

Trends Biochem Sci 2017 05 22;42(5):333-341. Epub 2017 Jan 22.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2017.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414595PMC
May 2017

2016 update of the PRIDE database and its related tools.

Nucleic Acids Res 2016 12 28;44(22):11033. Epub 2016 Sep 28.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkw880DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5159556PMC
December 2016

Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.

Nat Methods 2016 Aug 27;13(8):651-656. Epub 2016 Jun 27.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1038/nmeth.3902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4968634PMC
August 2016

Ten Simple Rules for Taking Advantage of Git and GitHub.

PLoS Comput Biol 2016 07 14;12(7):e1004947. Epub 2016 Jul 14.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1004947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4945047PMC
July 2016

2016 update of the PRIDE database and its related tools.

Nucleic Acids Res 2016 Jan 2;44(D1):D447-56. Epub 2015 Nov 2.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK National Center for Protein Sciences, Beijing, China.

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http://nar.oxfordjournals.org/content/44/D1/D447.full.pdf
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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkv1145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702828PMC
January 2016

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.

Bioinformatics 2015 Sep 24;31(17):2903-5. Epub 2015 Apr 24.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btv250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547611PMC
September 2015

Introducing the PRIDE Archive RESTful web services.

Nucleic Acids Res 2015 Jul 22;43(W1):W599-604. Epub 2015 Apr 22.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK

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http://dx.doi.org/10.1093/nar/gkv382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489246PMC
July 2015

Proteomics data visualisation.

Proteomics 2015 Apr;15(8):1339-40

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http://dx.doi.org/10.1002/pmic.201570063DOI Listing
April 2015

Development of data representation standards by the human proteome organization proteomics standards initiative.

J Am Med Inform Assoc 2015 May 28;22(3):495-506. Epub 2015 Feb 28.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/jamia/ocv001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4457114PMC
May 2015

A public repository for mass spectrometry imaging data.

Anal Bioanal Chem 2015 Mar;407(8):2027-33

Institute of Inorganic and Analytical Chemistry, Justus Liebig University, Schubertstrasse 60, 35392, Giessen, Germany,

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http://link.springer.com/10.1007/s00216-014-8357-8
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http://dx.doi.org/10.1007/s00216-014-8357-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357645PMC
March 2015

Open source libraries and frameworks for biological data visualisation: a guide for developers.

Proteomics 2015 Apr 5;15(8):1356-74. Epub 2015 Feb 5.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201400377DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4409855PMC
April 2015

Identifying novel biomarkers through data mining-a realistic scenario?

Proteomics Clin Appl 2015 Apr 12;9(3-4):437-43. Epub 2015 Jan 12.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Division of Immunology, Allergy and Infectious Diseases, Department of Dermatology, Medical University of Vienna, Austria.

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http://doi.wiley.com/10.1002/prca.201400107
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http://dx.doi.org/10.1002/prca.201400107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833187PMC
April 2015

Analysis of the tryptic search space in UniProt databases.

Proteomics 2015 Jan 3;15(1):48-57. Epub 2014 Dec 3.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201400227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298651PMC
January 2015

Meeting new challenges: The 2014 HUPO-PSI/COSMOS Workshop: 13-15 April 2014, Frankfurt, Germany.

Proteomics 2014 Nov 9;14(21-22):2363-8. Epub 2014 Oct 9.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201470164DOI Listing
November 2014

Making proteomics data accessible and reusable: current state of proteomics databases and repositories.

Proteomics 2015 Mar;15(5-6):930-49

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201400302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4409848PMC
March 2015

How to submit MS proteomics data to ProteomeXchange via the PRIDE database.

Proteomics 2014 Oct 21;14(20):2233-41. Epub 2014 Aug 21.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201400120DOI Listing
October 2014

Analysis of the protein domain and domain architecture content in fungi and its application in the search of new antifungal targets.

PLoS Comput Biol 2014 Jul 17;10(7):e1003733. Epub 2014 Jul 17.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1371/journal.pcbi.1003733DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102429PMC
July 2014

jmzTab: a java interface to the mzTab data standard.

Proteomics 2014 Jun 29;14(11):1328-32. Epub 2014 Apr 29.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK; Department of Computer Science and Technology, Hubei University of Education, Wuhan, China.

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http://dx.doi.org/10.1002/pmic.201300560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4230411PMC
June 2014

A survey of molecular descriptors used in mass spectrometry based proteomics.

Curr Top Med Chem 2014 ;14(3):388-97

Department of Proteomics, Center for Genetic Engineering and Biotechnology, Ciudad de la Habana. Cuba.

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http://dx.doi.org/10.2174/1568026613666131204113537DOI Listing
October 2014

Preparing to work with big data in proteomics - a report on the HUPO-PSI Spring Workshop: April 15-17, 2013, Liverpool, UK.

Proteomics 2013 Oct;13(20):2931-7

European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201370166DOI Listing
October 2013

Proteomics data exchange and storage: the need for common standards and public repositories.

Methods Mol Biol 2013 ;1007:317-33

EMBL-EBI, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1007/978-1-62703-392-3_14DOI Listing
December 2013

Pride-asap: automatic fragment ion annotation of identified PRIDE spectra.

J Proteomics 2013 Dec 17;95:89-92. Epub 2013 Apr 17.

Department of Medical Protein Research, VIB, Ghent, Belgium; Department of Biochemistry, Ghent University, Ghent, Belgium.

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http://dx.doi.org/10.1016/j.jprot.2013.04.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085470PMC
December 2013

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Mol Cell Proteomics 2013 Aug 18;12(8):2332-40. Epub 2013 Apr 18.

Quantitative Biology Center and Department of Computer Science, Center for Bioinformatics, University of Tübingen, Sand 14, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1074/mcp.O113.028506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734589PMC
August 2013

Shorthand notation for lipid structures derived from mass spectrometry.

J Lipid Res 2013 Jun 2;54(6):1523-30. Epub 2013 Apr 2.

Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany.

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http://dx.doi.org/10.1194/jlr.M033506DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3646453PMC
June 2013

From Peptidome to PRIDE: public proteomics data migration at a large scale.

Proteomics 2013 May 20;13(10-11):1692-5. Epub 2013 Apr 20.

EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201200514DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3717177PMC
May 2013

Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.

Biochim Biophys Acta 2014 Jan 1;1844(1 Pt A):63-76. Epub 2013 Mar 1.

EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK; Department of Proteomics, Center for Genetic Engineering and Biotechnology, Ciudad de la Habana, Cuba.

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http://dx.doi.org/10.1016/j.bbapap.2013.02.032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3898926PMC
January 2014

jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats.

Proteomics 2012 Mar;12(6):795-8

EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201100578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472022PMC
March 2012

jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data.

Proteomics 2012 Mar;12(6):790-4

EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1002/pmic.201100577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933944PMC
March 2012

PRIDE: quality control in a proteomics data repository.

Database (Oxford) 2012 20;2012:bas004. Epub 2012 Mar 20.

EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/database/bas004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308160PMC
June 2012

Isoelectric point optimization using peptide descriptors and support vector machines.

J Proteomics 2012 Apr 3;75(7):2269-74. Epub 2012 Feb 3.

Department of Proteomics, Center for Genetic Engineering and Biotechnology, Ave 31 e/ 158 y 190, Cubanacán, Playa, Ciudad de la Habana, Cuba.

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http://dx.doi.org/10.1016/j.jprot.2012.01.029DOI Listing
April 2012

Published and perished? The influence of the searched protein database on the long-term storage of proteomics data.

Mol Cell Proteomics 2011 Sep 23;10(9):M111.008490. Epub 2011 Jun 23.

EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://www.mcponline.org/lookup/doi/10.1074/mcp.M111.008490
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http://dx.doi.org/10.1074/mcp.M111.008490DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3186200PMC
September 2011

EST analysis pipeline: use of distributed computing resources.

Methods Mol Biol 2011 ;722:103-20

EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://link.springer.com/10.1007/978-1-61779-040-9_7
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http://dx.doi.org/10.1007/978-1-61779-040-9_7DOI Listing
September 2011

Quality control in proteomics.

Proteomics 2011 Mar;11(6):1015-6

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http://dx.doi.org/10.1002/pmic.201190020DOI Listing
March 2011

Submitting proteomics data to PRIDE using PRIDE Converter.

Methods Mol Biol 2011 ;694:237-53

Department of Informatics, University of Bergen, Bergen, Norway.

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http://dx.doi.org/10.1007/978-1-60761-977-2_16DOI Listing
February 2011

Organelle proteomics experimental designs and analysis.

Proteomics 2010 Nov 2;10(22):3957-69. Epub 2010 Nov 2.

Cambridge Centre for Proteomics, Cambridge Systems Biology Centre, Department of Biochemistry, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.201000244DOI Listing
November 2010

PRIDE and "Database on Demand" as valuable tools for computational proteomics.

Methods Mol Biol 2011 ;696:93-105

European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK.

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http://dx.doi.org/10.1007/978-1-60761-987-1_6DOI Listing
February 2011

Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.

J Proteomics 2010 Oct 6;73(11):2136-46. Epub 2010 Jul 6.

EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1016/j.jprot.2010.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2958306PMC
October 2010

The Ontology Lookup Service: bigger and better.

Nucleic Acids Res 2010 Jul 11;38(Web Server issue):W155-60. Epub 2010 May 11.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkq331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896109PMC
July 2010

PRIDE: Data submission and analysis.

Curr Protoc Protein Sci 2010 Apr;Chapter 25:Unit 25.4

European Molecular Biology Laboratory-European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom.

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http://doi.wiley.com/10.1002/0471140864.ps2504s60
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http://dx.doi.org/10.1002/0471140864.ps2504s60DOI Listing
April 2010

The Proteomics Identifications database: 2010 update.

Nucleic Acids Res 2010 Jan 11;38(Database issue):D736-42. Epub 2009 Nov 11.

EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1093/nar/gkp964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808904PMC
January 2010

Gene expression analysis of the biocontrol fungus Trichoderma harzianum in the presence of tomato plants, chitin, or glucose using a high-density oligonucleotide microarray.

BMC Microbiol 2009 Oct 13;9:217. Epub 2009 Oct 13.

Centro Hispano-Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, Campus de Villamayor-Parque Científico, 37185 Villamayor, Salamanca, Spain.

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http://dx.doi.org/10.1186/1471-2180-9-217DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2768740PMC
October 2009

Charting online OMICS resources: A navigational chart for clinical researchers.

Proteomics Clin Appl 2009 Jan 20;3(1):18-29. Epub 2008 Nov 20.

EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/prca.200800082DOI Listing
January 2009

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets.

Proteomics 2008 Mar;8(6):1138-48

EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.200700761DOI Listing
March 2008

Analyzing large-scale proteomics projects with latent semantic indexing.

J Proteome Res 2008 Jan 30;7(1):182-91. Epub 2007 Nov 30.

Martin Luther University Halle-Wittenberg, Halle-Saale, Germany.

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http://dx.doi.org/10.1021/pr070461kDOI Listing
January 2008

The PSI formal document process and its implementation on the PSI website.

Proteomics 2007 Jul;7(14):2355-7

EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1002/pmic.200700064DOI Listing
July 2007

Generation, annotation, and analysis of ESTs from four different Trichoderma strains grown under conditions related to biocontrol.

Appl Microbiol Biotechnol 2007 Jun 1;75(4):853-62. Epub 2007 Mar 1.

Centro de Investigaciones Científicas Isla de la Cartuja, Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC/University of Seville, 41092 Sevilla, Spain.

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http://dx.doi.org/10.1007/s00253-007-0885-0DOI Listing
June 2007

Partial silencing of a hydroxy-methylglutaryl-CoA reductase-encoding gene in Trichoderma harzianum CECT 2413 results in a lower level of resistance to lovastatin and lower antifungal activity.

Fungal Genet Biol 2007 Apr 10;44(4):269-83. Epub 2007 Jan 10.

Spanish-Portuguese Centre of Agricultural Research, Departamento de Microbiología y Genética, Universidad de Salamanca, Edificio Departamental Lab 208, Plaza Doctores de la Reina s/n, 37007 Salamanca, Spain.

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http://dx.doi.org/10.1016/j.fgb.2006.11.013DOI Listing
April 2007

A comparison of the phenotypic and genetic stability of recombinant Trichoderma spp. generated by protoplast- and Agrobacterium-mediated transformation.

J Microbiol 2006 Aug;44(4):383-95

Department of Microbiology and Genetics, Spanish-Portuguese Center of Agricultural Research, CIALE, University of Salamanca, 37007 Salamanca, Spain.

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August 2006