Joshua Z Levin

Joshua Z Levin

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Joshua Z Levin

Joshua Z Levin

Publications by authors named "Joshua Z Levin"

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Individual brain organoids reproducibly form cell diversity of the human cerebral cortex.

Nature 2019 Jun 5;570(7762):523-527. Epub 2019 Jun 5.

Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41586-019-1289-xDOI Listing
June 2019

TBK1 Suppresses RIPK1-Driven Apoptosis and Inflammation during Development and in Aging.

Cell 2018 09 23;174(6):1477-1491.e19. Epub 2018 Aug 23.

Department of Cell Biology, Harvard Medical School, 240 Longwood Ave., Boston, MA 02115, USA; Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 26 Qiuyue Rd., Pudong, 201210 Shanghai, China. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183096
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http://dx.doi.org/10.1016/j.cell.2018.07.041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128749PMC
September 2018

Transcriptomic Characterization of SF3B1 Mutation Reveals Its Pleiotropic Effects in Chronic Lymphocytic Leukemia.

Cancer Cell 2016 Nov 3;30(5):750-763. Epub 2016 Nov 3.

Department of Medical Oncology, Dana-Farber Cancer Institute, Dana 540, 44 Binney Street, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA; Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA; Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2016.10.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5127278PMC
November 2016

Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.

PLoS One 2014 9;9(5):e96094. Epub 2014 May 9.

Program in Membrane Biology, Division of Nephrology & Center for Systems Biology, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0096094PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015934PMC
October 2015

Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.

G3 (Bethesda) 2015 Sep 28;5(12):2539-45. Epub 2015 Sep 28.

Center for Integrated Fungal Research, North Carolina State University, Raleigh, North Carolina 27606 Department of Plant Pathology, North Carolina State University, Raleigh, North Carolina 27606

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http://dx.doi.org/10.1534/g3.115.020057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683626PMC
September 2015

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.

Cell 2015 Aug;162(4):738-50

FAS Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA; Broad Institute, Cambridge, MA 02142, USA; Department of Immunology and Infectious Disease, Harvard School of Public Health, Boston, MA 02115, USA. Electronic address:

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http://www.cell.com/cell/pdf/S0092-8674(15)00897-1.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S009286741500897
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http://dx.doi.org/10.1016/j.cell.2015.07.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4537774PMC
August 2015

Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence of immune pressure.

J Virol 2014 Jul 16;88(13):7286-93. Epub 2014 Apr 16.

Department of Pediatrics, University of Tennessee School of Medicine, Memphis, Tennessee, USA Department of Microbiology, Immunology, and Molecular Biology, University of Tennessee School of Medicine, Memphis, Tennessee, USA Children's Foundation Research Institute, LeBonheur Children's Hospital, Memphis, Tennessee, USA.

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http://dx.doi.org/10.1128/JVI.00038-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054443PMC
July 2014

Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.

Am J Hum Genet 2014 Jun;94(6):870-83

Molecular Neurogenetics Unit and Psychiatric and Neurodevelopmental Genetics Unit, Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA; Departments of Neurology, Genetics, Psychiatry, and Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02141, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121471PMC
June 2014

Chemoproteomic discovery of cysteine-containing human short open reading frames.

J Am Chem Soc 2013 Nov 25;135(45):16750-3. Epub 2013 Oct 25.

Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1021/ja406606jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868496PMC
November 2013

The African coelacanth genome provides insights into tetrapod evolution.

Nature 2013 Apr;496(7445):311-6

Molecular Genetics Program, Benaroya Research Institute, Seattle, Washington 98101, USA.

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http://dx.doi.org/10.1038/nature12027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633110PMC
April 2013

Peptidomic discovery of short open reading frame-encoded peptides in human cells.

Nat Chem Biol 2013 Jan 18;9(1):59-64. Epub 2012 Nov 18.

Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nchembio.1120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625679PMC
January 2013

De novo assembly of highly diverse viral populations.

BMC Genomics 2012 Sep 13;13:475. Epub 2012 Sep 13.

The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1186/1471-2164-13-475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3469330PMC
September 2012

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Genome Res 2012 Mar 22;22(3):577-91. Epub 2011 Nov 22.

Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1101/gr.133009.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3290793PMC
March 2012

Comprehensive comparative analysis of strand-specific RNA sequencing methods.

Nat Methods 2010 Sep 15;7(9):709-15. Epub 2010 Aug 15.

Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.1491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3005310PMC
September 2010

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts.

Genome Biol 2009 16;10(10):R115. Epub 2009 Oct 16.

Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA.

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http://dx.doi.org/10.1186/gb-2009-10-10-r115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784330PMC
January 2010

Arabidopsis hapless mutations define essential gametophytic functions.

Genetics 2004 Oct;168(2):971-82

Howard Hughes Medical Institute, Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1534/genetics.104.029447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448849PMC
October 2004

Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems.

Plant Cell 2004 Jun 21;16(6):1478-89. Epub 2004 May 21.

Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland 20742, USA.

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http://dx.doi.org/10.1105/tpc.021147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC490040PMC
June 2004

sup-9, sup-10, and unc-93 may encode components of a two-pore K+ channel that coordinates muscle contraction in Caenorhabditis elegans.

J Neurosci 2003 Oct;23(27):9133-45

Howard Hughes Medical Institute, Massachusetts Institute of Technology, Department of Biology, Cambridge, Massachusetts 02139, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6740817PMC
October 2003

A gene encoding an RNase D exonuclease-like protein is required for post-transcriptional silencing in Arabidopsis.

Plant J 2003 Aug;35(3):342-9

Friedrich Miescher Institute for Biomedical Research, Novartis Research Foundation, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.

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http://dx.doi.org/10.1046/j.1365-313x.2003.01810.xDOI Listing
August 2003

SEUSS, a member of a novel family of plant regulatory proteins, represses floral homeotic gene expression with LEUNIG.

Development 2002 Jan;129(1):253-63

Department of Cell Biology and Molecular Genetics, 3236 H.J. Patterson Hall, University of Maryland, College Park, MD 20742, USA.

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January 2002