Publications by authors named "Joshua J Waterfall"

36Publications

Immune responses in genomically simple SWI/SNF-deficient cancers.

Cancer 2020 Oct 20. Epub 2020 Oct 20.

Translational Research Department, Curie Institute Research Center, PSL Research University, Paris, France.

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http://dx.doi.org/10.1002/cncr.33172DOI Listing
October 2020

Genetic alterations of SUGP1 mimic mutant-SF3B1 splice pattern in lung adenocarcinoma and other cancers.

Oncogene 2020 Oct 14. Epub 2020 Oct 14.

Institut Curie, INSERM U830, DNA Repair and Uveal Melanoma (D.R.U.M.), Equipe labellisée par la Ligue Nationale Contre le Cancer, PSL Research University, Paris, France.

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http://dx.doi.org/10.1038/s41388-020-01507-5DOI Listing
October 2020

1q21.1 deletion and a rare functional polymorphism in siblings with thrombocytopenia-absent radius-like phenotypes.

Cold Spring Harb Mol Case Stud 2019 12 13;5(6). Epub 2019 Dec 13.

Clinical Genetics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20859, USA.

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http://dx.doi.org/10.1101/mcs.a004564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913155PMC
December 2019

Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors.

Cancer Cell 2019 12 7;36(6):597-612.e8. Epub 2019 Nov 7.

PSL Research University, Institut Curie Research Center, INSERM U830, Paris, France; PSL Research University, Institut Curie Research Center, Translational Research Department, Paris, France; SIREDO: Care, Innovation and Research for Children, Adolescents and Young Adults with Cancer, Institut Curie, Paris, France. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2019.10.008DOI Listing
December 2019

Rapid and reversible suppression of ALT by DAXX in osteosarcoma cells.

Sci Rep 2019 03 14;9(1):4544. Epub 2019 Mar 14.

Genetics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.

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http://www.nature.com/articles/s41598-019-41058-8
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http://dx.doi.org/10.1038/s41598-019-41058-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6418139PMC
March 2019

A Non-canonical Polycomb Dependency in Synovial Sarcoma.

Cancer Cell 2018 03;33(3):344-346

Genetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2018.02.013DOI Listing
March 2018

The epigenetic control of stemness in CD8 T cell fate commitment.

Science 2018 Jan;359(6372):177-186

Institut Curie, PSL Research University, F-75005 Paris, France.

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http://dx.doi.org/10.1126/science.aah6499DOI Listing
January 2018

Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant.

Am J Hum Genet 2016 05 14;98(5):830-842. Epub 2016 Apr 14.

Department of Genetics and Computational Biology, QIMR Berghofer, Herston, QLD 4029, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863475PMC
May 2016

Avalanching mutations in biallelic mismatch repair deficiency syndrome.

Nat Genet 2015 Mar;47(3):194-6

Genetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/ng.3227DOI Listing
March 2015

Building through breaking: the development of cancer neochromosomes.

Cancer Cell 2014 Nov 10;26(5):593-5. Epub 2014 Nov 10.

Genetics Branch, Center for Cancer Research, National Cancer Institute, 37 Convent Drive, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2014.10.013DOI Listing
November 2014

The role of mutation of metabolism-related genes in genomic hypermethylation.

Biochem Biophys Res Commun 2014 Dec 8;455(1-2):16-23. Epub 2014 Aug 8.

Genetics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbrc.2014.08.003DOI Listing
December 2014

High prevalence of MAP2K1 mutations in variant and IGHV4-34-expressing hairy-cell leukemias.

Nat Genet 2014 Jan 17;46(1):8-10. Epub 2013 Nov 17.

Genetics Branch, Center for Cancer Research (CCR), National Cancer Institute (NCI), US National Institutes of Health (NIH), Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/ng.2828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905739PMC
January 2014

Defining the status of RNA polymerase at promoters.

Cell Rep 2012 Oct 10;2(4):1025-35. Epub 2012 Oct 10.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/j.celrep.2012.08.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483431PMC
October 2012

Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteins.

G3 (Bethesda) 2012 Oct 1;2(10):1243-56. Epub 2012 Oct 1.

Laboratory of Metabolism, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1534/g3.112.004002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464117PMC
October 2012

Targeting epigenetic misregulation in synovial sarcoma.

Cancer Cell 2012 Mar;21(3):323-4

Genetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.ccr.2012.02.023DOI Listing
March 2012

A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells.

Cell 2011 May 5;145(4):622-34. Epub 2011 May 5.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/j.cell.2011.03.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3099127PMC
May 2011

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Science 2008 Dec 4;322(5909):1845-8. Epub 2008 Dec 4.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1126/science.1162228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2833333PMC
December 2008

Variational method for estimating the rate of convergence of Markov-chain Monte Carlo algorithms.

Phys Rev E Stat Nonlin Soft Matter Phys 2008 Oct 20;78(4 Pt 2):046704. Epub 2008 Oct 20.

Complex and Adaptive Systems Laboratory, University College Dublin, Dublin 4, Ireland.

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http://dx.doi.org/10.1103/PhysRevE.78.046704DOI Listing
October 2008

Extracting falsifiable predictions from sloppy models.

Ann N Y Acad Sci 2007 Dec 9;1115:203-11. Epub 2007 Oct 9.

Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1196/annals.1407.003DOI Listing
December 2007

Universally sloppy parameter sensitivities in systems biology models.

PLoS Comput Biol 2007 Oct 15;3(10):1871-78. Epub 2007 Aug 15.

Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, New York, USA.

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http://dx.doi.org/10.1371/journal.pcbi.0030189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2000971PMC
October 2007

Sloppy-model universality class and the Vandermonde matrix.

Phys Rev Lett 2006 Oct 12;97(15):150601. Epub 2006 Oct 12.

Laboratory of Atomic and Solid State Physics, Cornell University, Ithaca, New York 14853, USA.

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https://link.aps.org/doi/10.1103/PhysRevLett.97.150601
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http://dx.doi.org/10.1103/PhysRevLett.97.150601DOI Listing
October 2006