Joshua J Coon

Joshua J Coon

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Joshua J Coon

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PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production.

PLoS One 2019 21;14(5):e0212389. Epub 2019 May 21.

Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212389PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528989PMC
January 2020

The genetic basis of aneuploidy tolerance in wild yeast.

Elife 2020 Jan 7;9. Epub 2020 Jan 7.

Center for Genomic Science Innovation, University of Wisconsin-Madison, Madison, United States.

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http://dx.doi.org/10.7554/eLife.52063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970514PMC
January 2020

A Genetic Toggle for Chemical Control of Individual Plk1 Substrates.

Cell Chem Biol 2020 Jan 27. Epub 2020 Jan 27.

Department of Medicine, Division of Hematology/Oncology, University of Wisconsin, 1111 Highland Avenue, WIMR 6059, Madison, WI 53705, USA; University of Wisconsin Carbone Cancer Center, University of Wisconsin, Madison, WI 53705, USA; Department of Oncology/McArdle Laboratory for Cancer Research, University of Wisconsin, Madison, WI 53705, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2020.01.007DOI Listing
January 2020

Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics.

J Am Soc Mass Spectrom 2019 Dec 9;30(12):2470-2479. Epub 2019 May 9.

Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI, 48824, USA.

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http://dx.doi.org/10.1007/s13361-019-02206-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6527361PMC
December 2019

Proteomic and transcriptomic analyses of early and late-chronic Toxoplasma gondii infection shows novel and stage specific transcripts.

BMC Genomics 2019 Nov 14;20(1):859. Epub 2019 Nov 14.

Department of Medical Microbiology and Immunology, University of Wisconsin - Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1186/s12864-019-6213-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6857164PMC
November 2019

Real-time health monitoring through urine metabolomics.

NPJ Digit Med 2019 11;2:109. Epub 2019 Nov 11.

1Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706 USA.

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http://dx.doi.org/10.1038/s41746-019-0185-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6848197PMC
November 2019

Maximizing Tandem Mass Spectrometry Acquisition Rates for Shotgun Proteomics.

Anal Chem 2019 Oct 3;91(20):12625-12629. Epub 2019 Oct 3.

Morgridge Institute for Research , Madison , Wisconsin 53406 , United States.

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http://dx.doi.org/10.1021/acs.analchem.9b02979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800818PMC
October 2019

Genome Wide Phosphoproteome Analysis of Under Anaerobic, Aerobic, and N-Fixing Conditions.

Front Microbiol 2019 4;10:1986. Epub 2019 Sep 4.

DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, United States.

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http://dx.doi.org/10.3389/fmicb.2019.01986DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6737584PMC
September 2019

Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications.

Mol Cell Proteomics 2019 08 14;18(8 suppl 1):S193-S201. Epub 2019 May 14.

‡Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706

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http://www.mcponline.org/lookup/doi/10.1074/mcp.TIR118.00120
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http://dx.doi.org/10.1074/mcp.TIR118.001209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6692776PMC
August 2019

Single-Shot Capillary Zone Electrophoresis-Tandem Mass Spectrometry Produces over 4400 Phosphopeptide Identifications from a 220 ng Sample.

J Proteome Res 2019 Aug 26;18(8):3166-3173. Epub 2019 Jun 26.

Department of Chemistry and Biochemistry , University of Notre Dame , Notre Dame , Indiana 46556 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.9b00244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6679793PMC
August 2019

Accelerating Lipidomic Method Development through Simulation.

Anal Chem 2019 Aug 25;91(15):9698-9706. Epub 2019 Jul 25.

Department of Chemistry , University of Wisconsin-Madison , Madison , Wisconsin 53706 , United States.

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http://dx.doi.org/10.1021/acs.analchem.9b01234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6716604PMC
August 2019

S-adenosylmethionine biosynthesis is a targetable metabolic vulnerability of cancer stem cells.

Breast Cancer Res Treat 2019 May 2;175(1):39-50. Epub 2019 Feb 2.

Department of Medicine, University of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.

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http://dx.doi.org/10.1007/s10549-019-05146-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494685PMC
May 2019

Mapping Lipid Fragmentation for Tailored Mass Spectral Libraries.

J Am Soc Mass Spectrom 2019 Apr 12;30(4):659-668. Epub 2019 Feb 12.

Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s13361-018-02125-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6447430PMC
April 2019

OptSSeq explores enzyme expression and function landscapes to maximize isobutanol production rate.

Metab Eng 2019 03 27;52:324-340. Epub 2018 Dec 27.

DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53726, United States; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, United States; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ymben.2018.12.008DOI Listing
March 2019

Proteomic Atlas of the Human Brain in Alzheimer's Disease.

J Proteome Res 2019 03 20;18(3):1380-1391. Epub 2019 Feb 20.

Morgridge Institute for Research , Madison , Wisconsin 53706 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.9b00004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6480317PMC
March 2019

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast.

PLoS Genet 2019 03 11;15(3):e1008037. Epub 2019 Mar 11.

Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1008037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428351PMC
March 2019

Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.

Nat Commun 2019 03 21;10(1):1311. Epub 2019 Mar 21.

Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://www.nature.com/articles/s41467-019-09222-w
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http://dx.doi.org/10.1038/s41467-019-09222-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6428843PMC
March 2019

Systems-Level Analysis of Oxygen Exposure in : Implications for Isoprenoid Production.

mSystems 2019 Jan-Feb;4(1). Epub 2019 Feb 12.

DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1128/mSystems.00284-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372839PMC
February 2019

MS-Helios: a Circos wrapper to visualize multi-omic datasets.

BMC Bioinformatics 2019 Jan 11;20(1):21. Epub 2019 Jan 11.

Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1186/s12859-018-2564-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6330434PMC
January 2019

Ultra-High Pressure (>30,000 psi) Packing of Capillary Columns Enhancing Depth of Shotgun Proteomic Analyses.

Anal Chem 2018 10 14;90(19):11503-11508. Epub 2018 Sep 14.

Department of Chemistry , University of Wisconsin-Madison , Madison , Wisconsin 53706 , United States.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b02766
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http://dx.doi.org/10.1021/acs.analchem.8b02766DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6478162PMC
October 2018

GATA/Heme Multi-omics Reveals a Trace Metal-Dependent Cellular Differentiation Mechanism.

Dev Cell 2018 09 16;46(5):581-594.e4. Epub 2018 Aug 16.

UW-Madison Blood Research Program, Department of Cell and Regenerative Biology, Wisconsin Institutes for Medical Research, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA; UW Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI 53705, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2018.07.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6133724PMC
September 2018

The GIS2 Gene Is Repressed by a Zinc-Regulated Bicistronic RNA in Saccharomyces cerevisiae.

Genes (Basel) 2018 Sep 19;9(9). Epub 2018 Sep 19.

Department of Nutritional Sciences, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://www.mdpi.com/2073-4425/9/9/462
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http://dx.doi.org/10.3390/genes9090462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162548PMC
September 2018

Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation.

Anal Chem 2018 08 10;90(15):8946-8953. Epub 2018 Jul 10.

Genome Center of Wisconsin , Madison , Wisconsin 53706 , United States.

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http://dx.doi.org/10.1021/acs.analchem.8b01113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6434944PMC
August 2018

Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress.

Curr Biol 2018 08 2;28(16):2673-2680.e4. Epub 2018 Aug 2.

Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI 53706, USA; Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2018.06.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6132260PMC
August 2018

Expression of novel "LOCGEF" isoforms of ARHGEF18 in eosinophils.

J Leukoc Biol 2018 07 30;104(1):135-145. Epub 2018 Mar 30.

Department of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1002/JLB.2MA1017-418RRDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013370PMC
July 2018

Proteomic and Phosphoproteomic Changes Induced by Prolonged Activation of Human Eosinophils with IL-3.

J Proteome Res 2018 06 4;17(6):2102-2111. Epub 2018 May 4.

Department of Medicine , University of Wisconsin , Madison , Wisconsin 53792 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.8b00057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984179PMC
June 2018

Genetic Regulation of Plasma Lipid Species and Their Association with Metabolic Phenotypes.

Cell Syst 2018 06 13;6(6):709-721.e6. Epub 2018 Jun 13.

Laboratory of Integrative and Systems Physiology, École Polytchnique Fédérale de Lausanne, Lausanne 1015, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2018.05.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6397773PMC
June 2018

Systems Analyses Reveal Physiological Roles and Genetic Regulators of Liver Lipid Species.

Cell Syst 2018 06 13;6(6):722-733.e6. Epub 2018 Jun 13.

Morgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2018.05.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6054463PMC
June 2018

LipiDex: An Integrated Software Package for High-Confidence Lipid Identification.

Cell Syst 2018 05 25;6(5):621-625.e5. Epub 2018 Apr 25.

Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Morgridge Institute for Research, Madison, WI 53715, USA; Genome Center of Wisconsin, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2018.03.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5967991PMC
May 2018

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.

PLoS Comput Biol 2018 05 8;13(5):e1006088. Epub 2018 May 8.

Laboratory of Genetics, University of Wisconsin-Madison, Madison, WI, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940180PMC
May 2018

A Molecular Portrait of De Novo Genes in Yeasts.

Mol Biol Evol 2018 03;35(3):631-645

Atelier de BioInformatique, ISyEB UMR7205 Muséum National d'Histoire Naturelle, Paris, France.

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http://dx.doi.org/10.1093/molbev/msx315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850487PMC
March 2018

Caloric Restriction Engages Hepatic RNA Processing Mechanisms in Rhesus Monkeys.

Cell Metab 2018 03;27(3):677-688.e5

Department of Medicine, University of Wisconsin-Madison, Madison, WI 53705, USA; Geriatric Research, Education, and Clinical Center, William S. Middleton Memorial Veterans Hospital, Madison, WI 53705, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2018.01.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844481PMC
March 2018

Sequencing Larger Intact Proteins (30-70 kDa) with Activated Ion Electron Transfer Dissociation.

J Am Soc Mass Spectrom 2018 01 12;29(1):140-149. Epub 2017 Oct 12.

Genome Center of Wisconsin, Madison, WI, USA.

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http://dx.doi.org/10.1007/s13361-017-1808-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5786479PMC
January 2018

The Role of Electron Transfer Dissociation in Modern Proteomics.

Anal Chem 2018 01 12;90(1):40-64. Epub 2017 Dec 12.

Department of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b04810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5750139PMC
January 2018

Multi-omics Reveal Specific Targets of the RNA-Binding Protein Puf3p and Its Orchestration of Mitochondrial Biogenesis.

Cell Syst 2018 Jan 13;6(1):125-135.e6. Epub 2017 Dec 13.

Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA; Morgridge Institute for Research, Madison, WI 53715, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S24054712173054
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http://dx.doi.org/10.1016/j.cels.2017.11.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799006PMC
January 2018

ATM directs DNA damage responses and proteostasis via genetically separable pathways.

Sci Signal 2018 01 9;11(512). Epub 2018 Jan 9.

Howard Hughes Medical Institute, Department of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.

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http://dx.doi.org/10.1126/scisignal.aan5598DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5898228PMC
January 2018

Multiplexed proteome analysis with neutron-encoded stable isotope labeling in cells and mice.

Nat Protoc 2018 01 11;13(1):293-306. Epub 2018 Jan 11.

Genome Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1038/nprot.2017.121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5920564PMC
January 2018

Chemical genomic guided engineering of gamma-valerolactone tolerant yeast.

Microb Cell Fact 2018 Jan 12;17(1). Epub 2018 Jan 12.

Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, 1552 University Ave, Madison, WI, USA.

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http://dx.doi.org/10.1186/s12934-017-0848-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5767017PMC
January 2018

Gender Diversity in a STEM Subfield - Analysis of a Large Scientific Society and Its Annual Conferences.

J Am Soc Mass Spectrom 2017 12 26;28(12):2523-2531. Epub 2017 Sep 26.

The Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s13361-017-1803-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856480PMC
December 2017

Multi-omic Mitoprotease Profiling Defines a Role for Oct1p in Coenzyme Q Production.

Mol Cell 2017 Dec;68(5):970-977.e11

Morgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.11.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5730362PMC
December 2017

Phosphorylation Dynamics Dominate the Regulated Proteome during Early Xenopus Development.

Sci Rep 2017 Nov 15;7(1):15647. Epub 2017 Nov 15.

Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46556, USA.

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http://dx.doi.org/10.1038/s41598-017-15936-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688136PMC
November 2017

A Split-Abl Kinase for Direct Activation in Cells.

Cell Chem Biol 2017 Oct 14;24(10):1250-1258.e4. Epub 2017 Sep 14.

Department of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA; Department of Cellular & Molecular Pharmacology, University of California, San Francisco, CA 94158, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2017.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5650542PMC
October 2017

Proteomics of Eosinophil Activation.

Front Med (Lausanne) 2017 29;4:159. Epub 2017 Sep 29.

Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, United States.

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http://dx.doi.org/10.3389/fmed.2017.00159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626809PMC
September 2017

A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions.

J Physiol 2017 08 4;595(15):5209-5226. Epub 2017 Jul 4.

Department of Comparative Biosciences, University of Wisconsin - Madison, Madison, WI, USA.

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http://dx.doi.org/10.1113/JP273904DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538225PMC
August 2017

GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia.

Dev Cell 2017 08;42(3):213-225.e4

Department of Cell and Regenerative Biology, UW-Madison Blood Research Program, Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2017.07.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5578808PMC
August 2017

Sulfur Pentafluoride is a Preferred Reagent Cation for Negative Electron Transfer Dissociation.

J Am Soc Mass Spectrom 2017 07 27;28(7):1324-1332. Epub 2017 Mar 27.

Department of Chemistry, University of Wisconsin, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s13361-017-1600-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5483201PMC
July 2017

Integrative proteomics and biochemical analyses define Ptc6p as the pyruvate dehydrogenase phosphatase.

J Biol Chem 2017 07 24;292(28):11751-11759. Epub 2017 May 24.

From the Morgridge Institute for Research, Madison, Wisconsin 53715,

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http://dx.doi.org/10.1074/jbc.M117.787341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512070PMC
July 2017

Activated Ion-Electron Transfer Dissociation Enables Comprehensive Top-Down Protein Fragmentation.

J Proteome Res 2017 07 19;16(7):2653-2659. Epub 2017 Jun 19.

Morgridge Institute for Research , Madison, Wisconsin 53715, United States.

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http://dx.doi.org/10.1021/acs.jproteome.7b00249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5555583PMC
July 2017

Phosphoproteomics with Activated Ion Electron Transfer Dissociation.

Anal Chem 2017 06 17;89(12):6367-6376. Epub 2017 Apr 17.

Morgridge Institute for Research , Madison, Wisconsin 53715, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b00212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5555596PMC
June 2017

Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition.

Nat Commun 2017 05 24;8:15571. Epub 2017 May 24.

McArdle Laboratory for Cancer Research, University of Wisconsin - Madison, Madison, Wisconsin 53705, USA.

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http://dx.doi.org/10.1038/ncomms15571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5458078PMC
May 2017

Ptc7p Dephosphorylates Select Mitochondrial Proteins to Enhance Metabolic Function.

Cell Rep 2017 01;18(2):307-313

Morgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247163175
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http://dx.doi.org/10.1016/j.celrep.2016.12.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5234840PMC
January 2017

Now, More Than Ever, Proteomics Needs Better Chromatography.

Cell Syst 2016 10;3(4):321-324

The Department of Biomolecular Chemistry, University of Wisconsin - Madison, Madison, WI, USA; The Genome Center of Wisconsin, University of Wisconsin - Madison, Madison, WI, USA; The Department of Chemistry, University of Wisconsin - Madison, Madison, WI, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S24054712163032
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http://dx.doi.org/10.1016/j.cels.2016.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5448283PMC
October 2016

Valosin-containing protein (VCP)-Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor.

Mol Cell Proteomics 2016 09 12;15(9):2970-86. Epub 2016 Jul 12.

From the ‡Division of Biology and Biological Engineering, California Institute of Technology, 1200 E. California Blvd, Pasadena, California 91125; ‡‡Howard Hughes Medical Institute, Pasadena, California 91125

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http://dx.doi.org/10.1074/mcp.M116.061036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013311PMC
September 2016

Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network.

Elife 2016 09 30;5. Epub 2016 Sep 30.

Laboratory of Genetics, University of Wisconsin-Madison, Madison, United States.

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http://dx.doi.org/10.7554/eLife.19027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5089864PMC
September 2016

Full-Featured Search Algorithm for Negative Electron-Transfer Dissociation.

J Proteome Res 2016 08 22;15(8):2768-76. Epub 2016 Jul 22.

Department of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acs.jproteome.6b00319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128406PMC
August 2016

Decoding Polo-like kinase 1 signaling along the kinetochore-centromere axis.

Nat Chem Biol 2016 06 4;12(6):411-8. Epub 2016 Apr 4.

Department of Medicine, Hematology/Oncology Division, University of Wisconsin-Madison, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1038/nchembio.2060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4871769PMC
June 2016

Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research.

G3 (Bethesda) 2016 06 1;6(6):1757-66. Epub 2016 Jun 1.

Department of Energy (DOE) Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Wisconsin 53706 Laboratory of Genetics, University of Wisconsin-Madison, Wisconsin 53706 Genome Center of Wisconsin, University of Wisconsin-Madison, Wisconsin 53706 Wisconsin Energy Institute, J. F. Crow Institute for the Study of Evolution, University of Wisconsin-Madison, Wisconsin 53706 Microbiology Doctoral Training Program, University of Wisconsin-Madison, Wisconsin 53706

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http://dx.doi.org/10.1534/g3.116.029389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4889671PMC
June 2016

The Peripheral Blood Eosinophil Proteome.

J Proteome Res 2016 05 1;15(5):1524-33. Epub 2016 Apr 1.

Genome Center of Wisconsin, University of Wisconsin , 425 Henry Mall, Madison, Wisconsin 53706, United States.

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http://pubs.acs.org/doi/10.1021/acs.jproteome.6b00006
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http://dx.doi.org/10.1021/acs.jproteome.6b00006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5222579PMC
May 2016

Neucode Labels for Multiplexed, Absolute Protein Quantification.

Anal Chem 2016 Mar 25;88(6):3295-303. Epub 2016 Feb 25.

Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acs.analchem.5b04773DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5141612PMC
March 2016

Proteomics Moves into the Fast Lane.

Cell Syst 2016 03 23;2(3):142-3. Epub 2016 Mar 23.

Genome Center of Wisconsin, University of Wisconsin, Madison, WI 53706, USA; Department of Chemistry, University of Wisconsin, Madison, WI 53706, USA; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2016.03.002DOI Listing
March 2016

Mitochondrial protein hyperacetylation in the failing heart.

JCI Insight 2016 Feb 25;2(1). Epub 2016 Feb 25.

Cardiovascular Metabolism Program, Sanford Burnham Prebys Medical Discovery Institute, Orlando, Florida, USA.

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http://dx.doi.org/10.1172/jci.insight.84897DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795836PMC
February 2016