Joshua G Schraiber

Joshua G Schraiber

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Joshua G Schraiber

Joshua G Schraiber

Publications by authors named "Joshua G Schraiber"

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26Publications

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Multiple episodes of interbreeding between Neanderthal and modern humans.

Nat Ecol Evol 2019 01 26;3(1):39-44. Epub 2018 Nov 26.

Department of Biology, Temple University, Philadelphia, PA, USA.

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http://www.nature.com/articles/s41559-018-0735-8
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http://dx.doi.org/10.1038/s41559-018-0735-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6309227PMC
January 2019

A multispecies coalescent model for quantitative traits.

Elife 2018 08 14;7. Epub 2018 Aug 14.

Department of Biology, Indiana University, Bloomington, United States.

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http://dx.doi.org/10.7554/eLife.36482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6092125PMC
August 2018

Mito-nuclear discordance across a recent contact zone for California voles.

Ecol Evol 2018 Jun 24;8(12):6226-6241. Epub 2018 May 24.

Museum of Vertebrate Zoology University of California, Berkeley Berkeley California.

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http://dx.doi.org/10.1002/ece3.4129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6024151PMC
June 2018

Assessing the Relationship of Ancient and Modern Populations.

Genetics 2018 01 22;208(1):383-398. Epub 2017 Nov 22.

Department of Biology, and Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania 19122

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http://dx.doi.org/10.1534/genetics.117.300448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5753871PMC
January 2018

Pulsed evolution shaped modern vertebrate body sizes.

Proc Natl Acad Sci U S A 2017 12 7;114(50):13224-13229. Epub 2017 Nov 7.

Department of Biology, Temple University, Philadelphia, PA 19122;

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http://dx.doi.org/10.1073/pnas.1710920114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5740653PMC
December 2017

Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments.

Curr Biol 2016 12 10;26(24):3375-3382. Epub 2016 Nov 10.

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2016.10.041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764441PMC
December 2016

Bayesian Inference of Natural Selection from Allele Frequency Time Series.

Genetics 2016 05 23;203(1):493-511. Epub 2016 Mar 23.

Department of Integrative Biology, University of California, Berkeley, California 94720.

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http://dx.doi.org/10.1534/genetics.116.187278DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858794PMC
May 2016

Methods and models for unravelling human evolutionary history.

Nat Rev Genet 2015 Dec 10;16(12):727-40. Epub 2015 Nov 10.

Department of Genome Sciences, University of Washington, 3720 15th Avenue NE, box 355065, Seattle, Washington 98195-5065, USA.

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http://dx.doi.org/10.1038/nrg4005DOI Listing
December 2015

Sensitivity of quantitative traits to mutational effects and number of loci.

Theor Popul Biol 2015 Jun 31;102:85-93. Epub 2015 Mar 31.

Department of Integrative Biology, University of California, Berkeley, CA 94720, United States.

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http://dx.doi.org/10.1016/j.tpb.2015.03.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4437879PMC
June 2015

Evolution of Tibetan wild boars.

Nat Genet 2015 Mar;47(3):188-9

Animal Breeding and Genomics Group, Wageningen University, Wageningen, the Netherlands.

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http://dx.doi.org/10.1038/ng.3197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4455000PMC
March 2015

Approximation to the distribution of fitness effects across functional categories in human segregating polymorphisms.

PLoS Genet 2014 Nov 6;10(11):e1004697. Epub 2014 Nov 6.

Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222666PMC
November 2014

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:
Iosif Lazaridis Nick Patterson Alissa Mittnik Gabriel Renaud Swapan Mallick Karola Kirsanow Peter H Sudmant Joshua G Schraiber Sergi Castellano Mark Lipson Bonnie Berger Christos Economou Ruth Bollongino Qiaomei Fu Kirsten I Bos Susanne Nordenfelt Heng Li Cesare de Filippo Kay Prüfer Susanna Sawyer Cosimo Posth Wolfgang Haak Fredrik Hallgren Elin Fornander Nadin Rohland Dominique Delsate Michael Francken Jean-Michel Guinet Joachim Wahl George Ayodo Hamza A Babiker Graciela Bailliet Elena Balanovska Oleg Balanovsky Ramiro Barrantes Gabriel Bedoya Haim Ben-Ami Judit Bene Fouad Berrada Claudio M Bravi Francesca Brisighelli George B J Busby Francesco Cali Mikhail Churnosov David E C Cole Daniel Corach Larissa Damba George van Driem Stanislav Dryomov Jean-Michel Dugoujon Sardana A Fedorova Irene Gallego Romero Marina Gubina Michael Hammer Brenna M Henn Tor Hervig Ugur Hodoglugil Aashish R Jha Sena Karachanak-Yankova Rita Khusainova Elza Khusnutdinova Rick Kittles Toomas Kivisild William Klitz Vaidutis Kučinskas Alena Kushniarevich Leila Laredj Sergey Litvinov Theologos Loukidis Robert W Mahley Béla Melegh Ene Metspalu Julio Molina Joanna Mountain Klemetti Näkkäläjärvi Desislava Nesheva Thomas Nyambo Ludmila Osipova Jüri Parik Fedor Platonov Olga Posukh Valentino Romano Francisco Rothhammer Igor Rudan Ruslan Ruizbakiev Hovhannes Sahakyan Antti Sajantila Antonio Salas Elena B Starikovskaya Ayele Tarekegn Draga Toncheva Shahlo Turdikulova Ingrida Uktveryte Olga Utevska René Vasquez Mercedes Villena Mikhail Voevoda Cheryl A Winkler Levon Yepiskoposyan Pierre Zalloua Tatijana Zemunik Alan Cooper Cristian Capelli Mark G Thomas Andres Ruiz-Linares Sarah A Tishkoff Lalji Singh Kumarasamy Thangaraj Richard Villems David Comas Rem Sukernik Mait Metspalu Matthias Meyer Evan E Eichler Joachim Burger Montgomery Slatkin Svante Pääbo Janet Kelso David Reich Johannes Krause

Nature 2014 Sep;513(7518):409-13

1] Institute for Archaeological Sciences, University of Tübingen, Tübingen 72074, Germany. [2] Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany. [3] Max Planck Institut für Geschichte und Naturwissenschaften, Jena 07745, Germany.

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https://genetics.med.harvard.edu/reich/Reich_Lab/Welcome_fil
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http://biorxiv.org/content/biorxiv/early/2013/12/23/001552.f
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http://www.geo.uni-tuebingen.de/fileadmin/website/arbeitsber
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http://www.nature.com/doifinder/10.1038/nature13673
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http://dx.doi.org/10.1038/nature13673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4170574PMC
September 2014

Inferring evolutionary histories of pathway regulation from transcriptional profiling data.

PLoS Comput Biol 2013 10;9(10):e1003255. Epub 2013 Oct 10.

Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3794907PMC
May 2014

A path integral formulation of the Wright-Fisher process with genic selection.

Theor Popul Biol 2014 Mar 21;92:30-5. Epub 2013 Nov 21.

Department of Integrative Biology, UC Berkeley, United States. Electronic address:

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http://dx.doi.org/10.1016/j.tpb.2013.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932315PMC
March 2014

Analysis and rejection sampling of Wright-Fisher diffusion bridges.

Theor Popul Biol 2013 Nov 31;89:64-74. Epub 2013 Aug 31.

Department of Integrative Biology, University of California, 3060 Valley Life Sciences Bldg #3140, Berkeley, CA 94720-3140, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tpb.2013.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3882091PMC
November 2013

Phylogenetic analysis using Lévy processes: finding jumps in the evolution of continuous traits.

Syst Biol 2013 Mar 3;62(2):193-204. Epub 2012 Oct 3.

Department of Integrative Biology, University of California, Berkeley, CA 94720-3140, USA.

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http://dx.doi.org/10.1093/sysbio/sys086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566600PMC
March 2013

Genomic tests of variation in inbreeding among individuals and among chromosomes.

Genetics 2012 Dec 10;192(4):1477-82. Epub 2012 Oct 10.

Department of Integrative Biology, University of California, Berkeley, CA 94720-3140, USA.

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http://dx.doi.org/10.1534/genetics.112.145367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3512152PMC
December 2012

Analyses of pig genomes provide insight into porcine demography and evolution.

Authors:
Martien A M Groenen Alan L Archibald Hirohide Uenishi Christopher K Tuggle Yasuhiro Takeuchi Max F Rothschild Claire Rogel-Gaillard Chankyu Park Denis Milan Hendrik-Jan Megens Shengting Li Denis M Larkin Heebal Kim Laurent A F Frantz Mario Caccamo Hyeonju Ahn Bronwen L Aken Anna Anselmo Christian Anthon Loretta Auvil Bouabid Badaoui Craig W Beattie Christian Bendixen Daniel Berman Frank Blecha Jonas Blomberg Lars Bolund Mirte Bosse Sara Botti Zhan Bujie Megan Bystrom Boris Capitanu Denise Carvalho-Silva Patrick Chardon Celine Chen Ryan Cheng Sang-Haeng Choi William Chow Richard C Clark Christopher Clee Richard P M A Crooijmans Harry D Dawson Patrice Dehais Fioravante De Sapio Bert Dibbits Nizar Drou Zhi-Qiang Du Kellye Eversole João Fadista Susan Fairley Thomas Faraut Geoffrey J Faulkner Katie E Fowler Merete Fredholm Eric Fritz James G R Gilbert Elisabetta Giuffra Jan Gorodkin Darren K Griffin Jennifer L Harrow Alexander Hayward Kerstin Howe Zhi-Liang Hu Sean J Humphray Toby Hunt Henrik Hornshøj Jin-Tae Jeon Patric Jern Matthew Jones Jerzy Jurka Hiroyuki Kanamori Ronan Kapetanovic Jaebum Kim Jae-Hwan Kim Kyu-Won Kim Tae-Hun Kim Greger Larson Kyooyeol Lee Kyung-Tai Lee Richard Leggett Harris A Lewin Yingrui Li Wansheng Liu Jane E Loveland Yao Lu Joan K Lunney Jian Ma Ole Madsen Katherine Mann Lucy Matthews Stuart McLaren Takeya Morozumi Michael P Murtaugh Jitendra Narayan Dinh Truong Nguyen Peixiang Ni Song-Jung Oh Suneel Onteru Frank Panitz Eung-Woo Park Hong-Seog Park Geraldine Pascal Yogesh Paudel Miguel Perez-Enciso Ricardo Ramirez-Gonzalez James M Reecy Sandra Rodriguez-Zas Gary A Rohrer Lauretta Rund Yongming Sang Kyle Schachtschneider Joshua G Schraiber John Schwartz Linda Scobie Carol Scott Stephen Searle Bertrand Servin Bruce R Southey Goran Sperber Peter Stadler Jonathan V Sweedler Hakim Tafer Bo Thomsen Rashmi Wali Jian Wang Jun Wang Simon White Xun Xu Martine Yerle Guojie Zhang Jianguo Zhang Jie Zhang Shuhong Zhao Jane Rogers Carol Churcher Lawrence B Schook

Nature 2012 Nov;491(7424):393-8

Animal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands.

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http://www.umass.edu/vetimm/docs/Groenen_etal_2012.pdf
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http://www.nature.com/doifinder/10.1038/nature11622
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http://dx.doi.org/10.1038/nature11622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3566564PMC
November 2012

Evolution of a membrane protein regulon in Saccharomyces.

Mol Biol Evol 2012 Jul 20;29(7):1747-56. Epub 2012 Jan 20.

Department of Molecular and Cell Biology, University of California, Berkeley, USA.

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http://dx.doi.org/10.1093/molbev/mss017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3375471PMC
July 2012

Constraints on the use of lifespan-shortening Wolbachia to control dengue fever.

J Theor Biol 2012 Mar 16;297:26-32. Epub 2011 Dec 16.

Center for Theoretical Evolutionary Genomics, Department of Integrative Biology, University of California, Berkeley 94720, United States.

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http://dx.doi.org/10.1016/j.jtbi.2011.12.006DOI Listing
March 2012