Joshua D Campbell

Joshua D Campbell

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Joshua D Campbell

Joshua D Campbell

Publications by authors named "Joshua D Campbell"

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26Publications

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scruff: an R/Bioconductor package for preprocessing single-cell RNA-sequencing data.

BMC Bioinformatics 2019 May 2;20(1):222. Epub 2019 May 2.

Bioinformatics Program, Boston University, Boston, MA, USA.

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http://dx.doi.org/10.1186/s12859-019-2797-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6498700PMC
May 2019

Alterations in Bronchial Airway miRNA Expression for Lung Cancer Detection.

Cancer Prev Res (Phila) 2017 Nov 6;10(11):651-659. Epub 2017 Sep 6.

The Graduate Program in Bioinformatics, Boston University, Boston, Massachusetts.

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http://dx.doi.org/10.1158/1940-6207.CAPR-17-0098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6758560PMC
November 2017

Genomic approaches to accelerate cancer interception.

Lancet Oncol 2017 08 26;18(8):e494-e502. Epub 2017 Jul 26.

Department of Medicine and BU-BMC Cancer Center, Boston University, Boston, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/S1470-2045(17)30373-XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6020676PMC
August 2017

The cellular and molecular determinants of emphysematous destruction in COPD.

Sci Rep 2017 08 25;7(1):9562. Epub 2017 Aug 25.

Centre for Heart Lung Innovation, St. Paul's Hospital, Departments of Medicine, and Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada.

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http://dx.doi.org/10.1038/s41598-017-10126-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5573394PMC
August 2017

The Case for a Pre-Cancer Genome Atlas (PCGA).

Cancer Prev Res (Phila) 2016 Feb 1;9(2):119-24. Epub 2016 Feb 1.

Boston University Medical Center, Boston, Massachusetts.

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http://cancerpreventionresearch.aacrjournals.org/cgi/doi/10.
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http://dx.doi.org/10.1158/1940-6207.CAPR-16-0024DOI Listing
February 2016

SubmiRine: assessing variants in microRNA targets using clinical genomic data sets.

Nucleic Acids Res 2015 Apr 26;43(8):3886-98. Epub 2015 Mar 26.

Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA

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http://academic.oup.com/nar/article/43/8/3886/2414381/SubmiR
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http://dx.doi.org/10.1093/nar/gkv256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417167PMC
April 2015

Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data.

RNA 2015 Feb 17;21(2):164-71. Epub 2014 Dec 17.

Bioinformatics Graduate Program, Boston University, Boston, Massachusetts 02215, USA Section of Computational Biomedicine, Boston University Medical Center, Boston, Massachusetts 02118, USA Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, Massachusetts 02118, USA

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http://dx.doi.org/10.1261/rna.046060.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338344PMC
February 2015

A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK.

Genome Med 2012 31;4(8):67. Epub 2012 Aug 31.

Division of Computational Biomedicine, Department of Medicine, Boston University School of Medicine, 72 East Concord Street, Boston, MA 02118, USA ; Bioinformatics Program, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://dx.doi.org/10.1186/gm367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4064320PMC
August 2014

MODMatcher: multi-omics data matcher for integrative genomic analysis.

PLoS Comput Biol 2014 Aug 14;10(8):e1003790. Epub 2014 Aug 14.

Icahn Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1003790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4133046PMC
August 2014

miR-638 regulates gene expression networks associated with emphysematous lung destruction.

Genome Med 2013 31;5(12):114. Epub 2013 Dec 31.

Division of Computational Biomedicine, Department of Medicine, Boston University School of Medicine, 72 East Concord Street Boston, MA 02118, USA ; Bioinformatics Program, Boston University, 44 Cummington Street Boston, MA 02215, USA.

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http://dx.doi.org/10.1186/gm519DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3971345PMC
May 2014

A single-sample microarray normalization method to facilitate personalized-medicine workflows.

Genomics 2012 Dec 19;100(6):337-44. Epub 2012 Aug 19.

Department of Pharmacology and Toxicology, University of Utah, 201 Presidents Circle, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1016/j.ygeno.2012.08.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3508193PMC
December 2012

Applying gene expression microarrays to pulmonary disease.

Respirology 2011 Apr;16(3):407-18

Section of Computational Biomedicine, Department of Medicine and Pulmonary Center, Boston University Medical Center, Boston University, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1111/j.1440-1843.2011.01942.xDOI Listing
April 2011