Publications by authors named "Joseph Zaia"

100Publications

Native Mass Spectrometry Sheds Light on Formation of Deadly Heparin-PF4 Complexes.

Authors:
Joseph Zaia

Biophys J 2020 Oct 21;119(7):1267. Epub 2020 Aug 21.

Department of Biochemistry, Boston University, Medical Campus, Boston, Massachusetts. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2020.07.040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7567973PMC
October 2020

Calculating glycoprotein similarities from mass spectrometric data.

Mol Cell Proteomics 2020 Sep 3. Epub 2020 Sep 3.

Boston University School of Medicine, United States

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http://dx.doi.org/10.1074/mcp.R120.002223DOI Listing
September 2020

A glycomics and proteomics study of aging and Parkinson's disease in human brain.

Sci Rep 2020 07 30;10(1):12804. Epub 2020 Jul 30.

Graduate Program in Molecular and Translational Medicine, Boston University School of Medicine, Boston, 02118, USA.

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http://dx.doi.org/10.1038/s41598-020-69480-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393382PMC
July 2020

Measuring Site-specific Glycosylation Similarity between Influenza a Virus Variants with Statistical Certainty.

Mol Cell Proteomics 2020 09 29;19(9):1533-1545. Epub 2020 Jun 29.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, Massachusetts, USA

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http://dx.doi.org/10.1074/mcp.RA120.002031DOI Listing
September 2020

Multi-task learning sparse group lasso: a method for quantifying antigenicity of influenza A(H1N1) virus using mutations and variations in glycosylation of Hemagglutinin.

BMC Bioinformatics 2020 May 11;21(1):182. Epub 2020 May 11.

Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, MS, USA.

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http://dx.doi.org/10.1186/s12859-020-3527-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7216668PMC
May 2020

Serial in-solution digestion protocol for mass spectrometry-based glycomics and proteomics analysis.

Mol Omics 2020 08 20;16(4):364-376. Epub 2020 Apr 20.

Boston University School of Medicine, Boston University, Department of Biochemistry, Boston, 02118, USA.

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http://dx.doi.org/10.1039/d0mo00019aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423595PMC
August 2020

Relative Retention Time Estimation Improves N-Glycopeptide Identifications by LC-MS/MS.

J Proteome Res 2020 05 10;19(5):2113-2121. Epub 2020 Apr 10.

Program for Bioinformatics, Boston University, Boston, Massachusetts 02215, United States.

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http://dx.doi.org/10.1021/acs.jproteome.0c00051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7473422PMC
May 2020

Toward Automatic and Comprehensive Glycan Characterization by Online PGC-LC-EED MS/MS.

Anal Chem 2020 01 24;92(1):782-791. Epub 2019 Dec 24.

Center for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.

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http://dx.doi.org/10.1021/acs.analchem.9b03183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082718PMC
January 2020

On-slide tissue digestion for mass spectrometry based glycomic and proteomic profiling.

MethodsX 2019 25;6:2329-2347. Epub 2019 Sep 25.

Boston University, Molecular and Translational Medicine, Boston, 02118, USA.

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http://dx.doi.org/10.1016/j.mex.2019.09.029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6807300PMC
September 2019

Why Glycosylation Matters in Building a Better Flu Vaccine.

Mol Cell Proteomics 2019 12 11;18(12):2348-2358. Epub 2019 Oct 11.

Dept. of Biochemistry, Boston University School of Medicine, Boston, MA 02118

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http://dx.doi.org/10.1074/mcp.R119.001491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6885707PMC
December 2019

NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods.

Authors:
Maria Lorna A De Leoz David L Duewer Adam Fung Lily Liu Hoi Kei Yau Oscar Potter Gregory O Staples Kenichiro Furuki Ruth Frenkel Yunli Hu Zoran Sosic Peiqing Zhang Friedrich Altmann Clemens Gru Nwald-Grube Chun Shao Joseph Zaia Waltraud Evers Stuart Pengelley Detlev Suckau Anja Wiechmann Anja Resemann Wolfgang Jabs Alain Beck John W Froehlich Chuncui Huang Yan Li Yaming Liu Shiwei Sun Yaojun Wang Youngsuk Seo Hyun Joo An Niels-Christian Reichardt Juan Echevarria Ruiz Stephanie Archer-Hartmann Parastoo Azadi Len Bell Zsuzsanna Lakos Yanming An John F Cipollo Maja Pucic-Bakovic Jerko Štambuk Gordan Lauc Xu Li Peng George Wang Andreas Bock René Hennig Erdmann Rapp Marybeth Creskey Terry D Cyr Miyako Nakano Taiki Sugiyama Pui-King Amy Leung Paweł Link-Lenczowski Jolanta Jaworek Shuang Yang Hui Zhang Tim Kelly Song Klapoetke Rui Cao Jin Young Kim Hyun Kyoung Lee Ju Yeon Lee Jong Shin Yoo Sa-Rang Kim Soo-Kyung Suh Noortje de Haan David Falck Guinevere S M Lageveen-Kammeijer Manfred Wuhrer Robert J Emery Radoslaw P Kozak Li Phing Liew Louise Royle Paulina A Urbanowicz Nicolle H Packer Xiaomin Song Arun Everest-Dass Erika Lattová Samanta Cajic Kathirvel Alagesan Daniel Kolarich Toyin Kasali Viv Lindo Yuetian Chen Kudrat Goswami Brian Gau Ravi Amunugama Richard Jones Corné J M Stroop Koichi Kato Hirokazu Yagi Sachiko Kondo C T Yuen Akira Harazono Xiaofeng Shi Paula E Magnelli Brian T Kasper Lara Mahal David J Harvey Roisin O'Flaherty Pauline M Rudd Radka Saldova Elizabeth S Hecht David C Muddiman Jichao Kang Prachi Bhoskar Daniele Menard Andrew Saati Christine Merle Steven Mast Sam Tep Jennie Truong Takashi Nishikaze Sadanori Sekiya Aaron Shafer Sohei Funaoka Masaaki Toyoda Peter de Vreugd Cassie Caron Pralima Pradhan Niclas Chiang Tan Yehia Mechref Sachin Patil Jeffrey S Rohrer Ranjan Chakrabarti Disha Dadke Mohammedazam Lahori Chunxia Zou Christopher Cairo Béla Reiz Randy M Whittal Carlito B Lebrilla Lauren Wu Andras Guttman Marton Szigeti Benjamin G Kremkow Kelvin H Lee Carina Sihlbom Barbara Adamczyk Chunsheng Jin Niclas G Karlsson Jessica Örnros Göran Larson Jonas Nilsson Bernd Meyer Alena Wiegandt Emy Komatsu Helene Perreault Edward D Bodnar Nassur Said Yannis-Nicolas Francois Emmanuelle Leize-Wagner Sandra Maier Anne Zeck Albert J R Heck Yang Yang Rob Haselberg Ying Qing Yu William Alley Joseph W Leone Hua Yuan Stephen E Stein

Mol Cell Proteomics 2020 01 7;19(1):11-30. Epub 2019 Oct 7.

Mass Spectrometry Data Center, Biomolecular Measurement Division, Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Drive Gaithersburg, Maryland 20899.

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http://dx.doi.org/10.1074/mcp.RA119.001677DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6944243PMC
January 2020

Characterization of Glycosaminoglycans in Gaping and Intact Connective Tissues of Farmed Atlantic Salmon () Fillets by Mass Spectrometry.

ACS Omega 2019 Sep 9;4(13):15337-15347. Epub 2019 Sep 9.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, Boston, Massachusetats 02118, United States.

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http://dx.doi.org/10.1021/acsomega.9b01136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761683PMC
September 2019

Proteomics, Glycomics, and Glycoproteomics of Matrisome Molecules.

Mol Cell Proteomics 2019 11 30;18(11):2138-2148. Epub 2019 Aug 30.

Molecular and Translational Medicine Program, Boston University, Boston, MA 02218

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http://dx.doi.org/10.1074/mcp.R119.001543DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6823855PMC
November 2019

Sequencing Heparan Sulfate Using HILIC LC-NETD-MS/MS.

Anal Chem 2019 09 29;91(18):11738-11746. Epub 2019 Aug 29.

Department of Biochemistry, Center for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.

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http://dx.doi.org/10.1021/acs.analchem.9b02313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161314PMC
September 2019

Structural studies of serum clusterin in ATTRwt amyloidosis.

Amyloid 2019;26(sup1):51-52

a Amyloidosis Center, Boston University School of Medicine , Boston , MA , USA.

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http://dx.doi.org/10.1080/13506129.2019.1582516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7135949PMC
January 2020

glypy: An Open Source Glycoinformatics Library.

J Proteome Res 2019 09 30;18(9):3532-3537. Epub 2019 Jul 30.

Program for Bioinformatics , Boston University , Boston , Massachusetts 02215 , United States.

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http://dx.doi.org/10.1021/acs.jproteome.9b00367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7158751PMC
September 2019

psims - A Declarative Writer for mzML and mzIdentML for Python.

Mol Cell Proteomics 2019 03 18;18(3):571-575. Epub 2018 Dec 18.

From the ‡Program for Bioinformatics, Boston University, Boston, Massachusetts 02215;

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http://dx.doi.org/10.1074/mcp.RP118.001070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6398200PMC
March 2019

Glycomic and Proteomic Changes in Aging Brain Nigrostriatal Pathway.

Mol Cell Proteomics 2018 09 18;17(9):1778-1787. Epub 2018 Jun 18.

From the ‡Department of Molecular and Translational Medicine, Center for Biomedical Mass Spectrometry, Boston University Medical Campus, Boston, Massachusetts;

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http://dx.doi.org/10.1074/mcp.RA118.000680DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6126385PMC
September 2018

Focus on Mass Spectrometry in Glycobiology and Related Fields, Honoring Catherine E. Costello, Recipient of the 2017 ASMS Award for a Distinguished Contribution in Mass Spectrometry.

J Am Soc Mass Spectrom 2018 06;29(6):1061-1064

Associate Editor, JASMS, Professor of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA.

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http://dx.doi.org/10.1007/s13361-018-1957-3DOI Listing
June 2018

Application of network smoothing to glycan LC-MS profiling.

Bioinformatics 2018 10;34(20):3511-3518

Program for Bioinformatics, Boston University, Boston, MA, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6669418PMC
October 2018

Deep Sequencing of Complex Proteoglycans: A Novel Strategy for High Coverage and Site-specific Identification of Glycosaminoglycan-linked Peptides.

Mol Cell Proteomics 2018 08 17;17(8):1578-1590. Epub 2018 May 17.

From the ‡Department of Biochemistry, Center for Biomedical Mass Spectrometry;

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http://dx.doi.org/10.1074/mcp.RA118.000766DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6072546PMC
August 2018

Lectin-mediated binding and sialoglycans of porcine surfactant protein D synergistically neutralize influenza A virus.

J Biol Chem 2018 07 16;293(27):10646-10662. Epub 2018 May 16.

From the Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL Utrecht, The Netherlands.

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http://dx.doi.org/10.1074/jbc.RA117.001430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036198PMC
July 2018

Comparison of Collisional and Electron-Based Dissociation Modes for Middle-Down Analysis of Multiply Glycosylated Peptides.

J Am Soc Mass Spectrom 2018 06 16;29(6):1075-1085. Epub 2018 Apr 16.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA, USA.

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http://dx.doi.org/10.1007/s13361-018-1909-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004259PMC
June 2018

Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra.

Mol Cell Proteomics 2018 07 3;17(7):1448-1456. Epub 2018 Apr 3.

From the ‡Program in Bioinformatics, Boston University - Boston, MA 02215;

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http://dx.doi.org/10.1074/mcp.RA118.000590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030731PMC
July 2018

Negative Electron Transfer Dissociation Sequencing of 3-O-Sulfation-Containing Heparan Sulfate Oligosaccharides.

J Am Soc Mass Spectrom 2018 06 21;29(6):1262-1272. Epub 2018 Mar 21.

Center for Biomedical Mass Spectrometry, Department of Biochemistry and Center for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, 5th Floor, Boston, MA, 02118, USA.

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http://dx.doi.org/10.1007/s13361-018-1907-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004244PMC
June 2018

Sensitive method for glycosaminoglycan analysis of tissue sections.

J Chromatogr A 2018 Apr 25;1544:41-48. Epub 2018 Feb 25.

MS Proteomics Research Group, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117, Budapest, Hungary; MTA TTK NAP B MS Neuroproteomics Group, Hungarian Academy of Sciences, Magyar Tudósok Körútja 2, H-1117, Budapest, Hungary.

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http://dx.doi.org/10.1016/j.chroma.2018.02.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590710PMC
April 2018

Heparan sulfate: Resilience factor and therapeutic target for cocaine abuse.

Sci Rep 2017 10 24;7(1):13931. Epub 2017 Oct 24.

Departments of Immunology and Neuroscience, The Scripps Research Institute, La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1038/s41598-017-13960-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654972PMC
October 2017

Microfluidic Capillary Electrophoresis-Mass Spectrometry for Analysis of Monosaccharides, Oligosaccharides, and Glycopeptides.

Anal Chem 2017 06 6;89(12):6645-6655. Epub 2017 Jun 6.

Department of Biochemistry, Center for Biomedical Mass Spectrometry and ‡Bioinformatics Program, Boston University , Boston, Massachusetts 02215, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b00875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5554952PMC
June 2017

Construction of a Database of Collision Cross Section Values for Glycopeptides, Glycans, and Peptides Determined by IM-MS.

Anal Chem 2017 04 30;89(8):4452-4460. Epub 2017 Mar 30.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine , Boston, Massachusetts 02118-2646, United States.

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http://dx.doi.org/10.1021/acs.analchem.6b04146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5766263PMC
April 2017

Non-reducing end labeling of heparan sulfate via click chemistry and a high throughput ELISA assay for heparanase.

Glycobiology 2017 06;27(6):518-524

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, 670 Albany Street, Boston, MA 02118, USA.

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http://dx.doi.org/10.1093/glycob/cww130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5421504PMC
June 2017

Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation.

Anal Bioanal Chem 2017 Jan 12;409(2):607-618. Epub 2016 Oct 12.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University Medical Campus, 715 Albany Street, Boston, MA, 02118, USA.

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http://dx.doi.org/10.1007/s00216-016-9970-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5283608PMC
January 2017

Nematodes join the family of chondroitin sulfate-synthesizing organisms: Identification of an active chondroitin sulfotransferase in Caenorhabditis elegans.

Sci Rep 2016 10 5;6:34662. Epub 2016 Oct 5.

Department of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1038/srep34662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050403PMC
October 2016

Extracellular matrix proteomics in schizophrenia and Alzheimer's disease.

Anal Bioanal Chem 2017 Jan 6;409(2):379-394. Epub 2016 Sep 6.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Cell Biology & Genomics, Boston University School of Medicine, Boston, MA, 02118, USA.

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http://dx.doi.org/10.1007/s00216-016-9900-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5203946PMC
January 2017

Phosphatidylethanolamine binding protein 4 (PEBP4) is a secreted protein and has multiple functions.

Biochim Biophys Acta 2016 Jul 28;1863(7 Pt A):1682-9. Epub 2016 Mar 28.

Department of Biochemistry, Boston University School of Medicine, Boston, MA 02118, United States; Department of Pathology, Institute of Basic Medical Sciences, Nanchang University Jiangxi Medical College, Nanchang, China. Electronic address:

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http://dx.doi.org/10.1016/j.bbamcr.2016.03.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5336313PMC
July 2016

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions.

Mol Cell Proteomics 2016 06 16;15(6):1895-912. Epub 2016 Mar 16.

From the ‡Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118; §Bioinformatics Program, Boston University, Boston, Massachusetts 02215;

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http://dx.doi.org/10.1074/mcp.M116.058016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5083086PMC
June 2016

Algorithms and design strategies towards automated glycoproteomics analysis.

Mass Spectrom Rev 2017 07 4;36(4):475-498. Epub 2016 Jan 4.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston University, Boston, MA 02118.

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http://dx.doi.org/10.1002/mas.21487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4931994PMC
July 2017

A review of methods for interpretation of glycopeptide tandem mass spectral data.

Glycoconj J 2016 06 26;33(3):285-96. Epub 2015 Nov 26.

Department of Biochemistry, Boston University, Medical Campus, 670 Albany St., Rm. 509, Boston, MA, 02118, USA.

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http://dx.doi.org/10.1007/s10719-015-9633-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4882288PMC
June 2016

Discovery of a heparan sulfate 3-O-sulfation specific peeling reaction.

Anal Chem 2015 Jan 22;87(1):592-600. Epub 2014 Dec 22.

Department of Biochemistry, Boston University Medical Campus , 670 Albany Street, Boston, Massachusetts 02118, United States.

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http://dx.doi.org/10.1021/ac503248kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4287833PMC
January 2015

A liquid chromatography-mass spectrometry-based approach to characterize the substrate specificity of mammalian heparanase.

J Biol Chem 2014 Dec 21;289(49):34141-51. Epub 2014 Oct 21.

From the Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118 and

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http://dx.doi.org/10.1074/jbc.M114.589630DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256347PMC
December 2014

Workflow for combined proteomics and glycomics profiling from histological tissues.

Anal Chem 2014 Oct 24;86(19):9670-8. Epub 2014 Sep 24.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine , Boston, Massachusetts 02118, United States.

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http://pubs.acs.org/doi/10.1021/ac5022216
Publisher Site
http://dx.doi.org/10.1021/ac5022216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4427244PMC
October 2014

Confident assignment of site-specific glycosylation in complex glycoproteins in a single step.

J Proteome Res 2014 Oct 9;13(10):4347-55. Epub 2014 Sep 9.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine , Boston, Massachusetts 02118, United States.

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http://dx.doi.org/10.1021/pr500506zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184449PMC
October 2014

Oligosaccharide substrate preferences of human extracellular sulfatase Sulf2 using liquid chromatography-mass spectrometry based glycomics approaches.

PLoS One 2014 15;9(8):e105143. Epub 2014 Aug 15.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105143PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134258PMC
December 2015

A computational framework for heparan sulfate sequencing using high-resolution tandem mass spectra.

Mol Cell Proteomics 2014 Sep 12;13(9):2490-502. Epub 2014 Jun 12.

§Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston University, Boston, Massachusetts 02118, USA;

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http://dx.doi.org/10.1074/mcp.M114.039560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4159664PMC
September 2014

Detecting O-GlcNAc using in vitro sulfation.

Glycobiology 2014 Aug 5;24(8):740-7. Epub 2014 May 5.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University, Boston, MA 02118, USA

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http://dx.doi.org/10.1093/glycob/cwu037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070980PMC
August 2014

A small molecule glycosaminoglycan mimetic blocks Plasmodium invasion of the mosquito midgut.

PLoS Pathog 2013 21;9(11):e1003757. Epub 2013 Nov 21.

W. Harry Feinstone Department of Molecular Microbiology and Immunology, Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1003757DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836724PMC
June 2014

Brittlestars contain highly sulfated chondroitin sulfates/dermatan sulfates that promote fibroblast growth factor 2-induced cell signaling.

Glycobiology 2014 Feb 18;24(2):195-207. Epub 2013 Nov 18.

Department of Medical Biochemistry and Microbiology, The Biomedical Center, Uppsala University, Box 582, SE-751 23 Uppsala, Sweden.

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http://dx.doi.org/10.1093/glycob/cwt100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907082PMC
February 2014

De novo sequencing of heparan sulfate oligosaccharides by electron-activated dissociation.

Anal Chem 2013 Dec 22;85(24):11979-86. Epub 2013 Nov 22.

Mass Spectrometry Resource, Department of Biochemistry, Boston University School of Medicine , 670 Albany Street, Suite 504, Boston, Massachusetts 02118, United States.

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http://dx.doi.org/10.1021/ac402931jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912864PMC
December 2013

Comment on "Computation of isotopic peak center-mass distribution by fourier transform".

Anal Chem 2013 Dec 4;85(24):12189-12192. Epub 2013 Dec 4.

Applied Bio & Molecular Systems, Vlaamse Instelling Voor Technologisch Onderzoek (VITO), Mol, Belgium.

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http://dx.doi.org/10.1021/ac402731hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119064PMC
December 2013

Mass spectral profiling of glycosaminoglycans from histological tissue surfaces.

Anal Chem 2013 Nov 29;85(22):10984-91. Epub 2013 Oct 29.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine , Boston, Massachusetts 02118, United States.

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http://pubs.acs.org/doi/10.1021/ac402517s
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http://dx.doi.org/10.1021/ac402517sDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3872031PMC
November 2013

Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012.

Mol Cell Proteomics 2013 Oct 13;12(10):2935-51. Epub 2013 Jun 13.

Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, Massachusetts 02118;

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http://dx.doi.org/10.1074/mcp.M113.030643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3790302PMC
October 2013

LC-MS and LC-MS/MS studies of incorporation of 34SO3 into glycosaminoglycan chains by sulfotransferases.

Glycobiology 2013 Aug 21;23(8):969-79. Epub 2013 May 21.

Department of Biochemistry and Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA 02118, USA.

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http://dx.doi.org/10.1093/glycob/cwt033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3695753PMC
August 2013

Comparative glycomics of leukocyte glycosaminoglycans.

FEBS J 2013 May 2;280(10):2447-61. Epub 2013 Apr 2.

Department of Biochemistry, Boston University School of Medicine, Boston University Medical Campus, MA 02118, USA.

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http://doi.wiley.com/10.1111/febs.12231
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http://dx.doi.org/10.1111/febs.12231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651794PMC
May 2013

Capillary electrophoresis-mass spectrometry of carbohydrates.

Authors:
Joseph Zaia

Methods Mol Biol 2013 ;984:13-25

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University Medial Campus, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-62703-296-4_2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4108199PMC
July 2013

Glycosaminoglycan glycomics using mass spectrometry.

Authors:
Joseph Zaia

Mol Cell Proteomics 2013 Apr 16;12(4):885-92. Epub 2013 Jan 16.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1074/mcp.R112.026294DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617335PMC
April 2013

Disaccharide analysis of glycosaminoglycans using hydrophilic interaction chromatography and mass spectrometry.

Anal Chem 2013 Jan 3;85(2):1138-45. Epub 2013 Jan 3.

Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1021/ac3030448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3557806PMC
January 2013

GlycReSoft: a software package for automated recognition of glycans from LC/MS data.

PLoS One 2012 26;7(9):e45474. Epub 2012 Sep 26.

Bioinformatics Program, Center for Biomedical Mass Spectrometry, Department, of Biochemistry, Boston University, Boston, Massachusetts, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0045474PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458864PMC
April 2013

Top-down approach for the direct characterization of low molecular weight heparins using LC-FT-MS.

Anal Chem 2012 Oct 26;84(20):8822-9. Epub 2012 Sep 26.

Department of Chemistry and Chemical Biology, Rensselaer Polytechnic Institute, Troy, New York 12180-3590, United States.

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http://dx.doi.org/10.1021/ac302232cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3479637PMC
October 2012

Mass spectrometric method for determining the uronic acid epimerization in heparan sulfate disaccharides generated using nitrous acid.

Anal Chem 2012 Sep 20;84(17):7539-46. Epub 2012 Aug 20.

Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts, United States.

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http://dx.doi.org/10.1021/ac3016054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3437266PMC
September 2012

Heparan sulfate 6-O-endosulfatases (Sulfs) coordinate the Wnt signaling pathways to regulate myoblast fusion during skeletal muscle regeneration.

J Biol Chem 2012 Sep 3;287(39):32651-64. Epub 2012 Aug 3.

The Pulmonary Center, Department of Medicine, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1074/jbc.M112.353243DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3463311PMC
September 2012

Tandem mass spectrometry of heparan sulfate negative ions: sulfate loss patterns and chemical modification methods for improvement of product ion profiles.

J Am Soc Mass Spectrom 2012 Sep 24;23(9):1498-511. Epub 2012 Jul 24.

Department of Biochemistry and Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, MA 02118, USA.

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http://dx.doi.org/10.1007/s13361-012-0429-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4146577PMC
September 2012

Effective use of mass spectrometry for glycan and glycopeptide structural analysis.

Anal Chem 2012 Apr 6;84(7):3040-8. Epub 2012 Mar 6.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University Medical Campus, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1021/ac3000573DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319649PMC
April 2012

A typical preparation of Francisella tularensis O-antigen yields a mixture of three types of saccharides.

Biochemistry 2011 Dec 28;50(50):10941-50. Epub 2011 Nov 28.

Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, United States.

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http://dx.doi.org/10.1021/bi201450vDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3238095PMC
December 2011

Improved liquid chromatography-MS/MS of heparan sulfate oligosaccharides via chip-based pulsed makeup flow.

Anal Chem 2011 Nov 7;83(21):8222-9. Epub 2011 Oct 7.

Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, United States.

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http://dx.doi.org/10.1021/ac201964nDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3205275PMC
November 2011

Multistage Tandem Mass Spectrometry of Chondroitin Sulfate and Dermatan Sulfate.

Int J Mass Spectrom 2011 Aug;305(2-3):131-137

Center for Biomedical Mass Spectrometry, Dept. of Biochemistry, Boston University, Boston, MA.

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https://linkinghub.elsevier.com/retrieve/pii/S13873806100039
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http://dx.doi.org/10.1016/j.ijms.2010.10.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158619PMC
August 2011

Highly sulfated nonreducing end-derived heparan sulfate domains bind fibroblast growth factor-2 with high affinity and are enriched in biologically active fractions.

J Biol Chem 2011 Jun 6;286(22):19311-9. Epub 2011 Apr 6.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1074/jbc.M110.204693DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3103309PMC
June 2011

Glycomics analysis of mammalian heparan sulfates modified by the human extracellular sulfatase HSulf2.

PLoS One 2011 Feb 8;6(2):e16689. Epub 2011 Feb 8.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016689PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035651PMC
February 2011

Analysis of Glycosaminoglycans Using Mass Spectrometry.

Curr Proteomics 2011;8(4):325-336

Center for Biomedical Mass Spectrometry, Dept. of Biochemistry, Boston University School of Medicine.

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http://www.eurekaselect.com/openurl/content.php?genre=articl
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http://dx.doi.org/10.2174/157016411798220871DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334465PMC
January 2011

At last, functional glycomics.

Authors:
Joseph Zaia

Nat Methods 2011 Jan;8(1):55-7

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http://dx.doi.org/10.1038/nmeth0111-55DOI Listing
January 2011

Targeted analysis of glycomics liquid chromatography/mass spectrometry data.

Anal Bioanal Chem 2011 Jan 16;399(2):727-35. Epub 2010 Oct 16.

Graduate Program in Bioinformatics, Boston University, Boston, MA 02218, USA.

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http://dx.doi.org/10.1007/s00216-010-4235-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3254673PMC
January 2011

Mass spectrometry and glycomics.

Authors:
Joseph Zaia

OMICS 2010 Aug;14(4):401-18

Department of Biochemistry, Boston University, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1089/omi.2009.0146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133787PMC
August 2010

Extended N-sulfated domains reside at the nonreducing end of heparan sulfate chains.

J Biol Chem 2010 Jun 2;285(24):18336-43. Epub 2010 Apr 2.

Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1074/jbc.M110.101592DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881759PMC
June 2010

Screening for anticoagulant heparan sulfate octasaccharides and fine structure characterization using tandem mass spectrometry.

Biochemistry 2010 May;49(17):3743-52

Department of Biochemistry, Boston University School of Medicine, 670 Albany Street, Boston, Massachusetts 02118, USA.

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http://pubs.acs.org/doi/abs/10.1021/bi100135d
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http://dx.doi.org/10.1021/bi100135dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251171PMC
May 2010

Comparative glycomics using a tetraplex stable-isotope coded tag.

Anal Chem 2010 Apr;82(7):3023-31

Boston University School of Medicine, Department of Biochemistry, Center for Biomedical Mass Spectrometry, Boston, Massachusetts 02118, USA.

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https://pubs.acs.org/doi/10.1021/ac100108w
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http://dx.doi.org/10.1021/ac100108wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2854645PMC
April 2010

Improved hydrophilic interaction chromatography LC/MS of heparinoids using a chip with postcolumn makeup flow.

Anal Chem 2010 Jan;82(2):516-22

Mass Spectrometry Resource, Department of Biochemistry, Boston University School of Medicine, 670 Albany Street, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1021/ac901706fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3247906PMC
January 2010

Extraction of chondroitin/dermatan sulfate glycosaminoglycans from connective tissue for mass spectrometric analysis.

Methods Mol Biol 2010 ;600:215-25

Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-60761-454-8_15DOI Listing
January 2010

Historical overview of glycoanalysis.

Methods Mol Biol 2010 ;600:9-30

Department of Biochemistry, Boston University School of Medicine, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-60761-454-8_2DOI Listing
January 2010

Organ-specific heparan sulfate structural phenotypes.

J Biol Chem 2009 May 25;284(18):11806-14. Epub 2009 Feb 25.

Department of Biochemistry, Boston University School of Medicine, Boston, Massachusetts 02118, USA.

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http://dx.doi.org/10.1074/jbc.M809637200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2673249PMC
May 2009

A chip-based amide-HILIC LC/MS platform for glycosaminoglycan glycomics profiling.

Proteomics 2009 Feb;9(3):686-95

Department of Biochemistry, Boston University School of Medicine, Mass Spectrometry Resource, Boston, MA 02118, USA.

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http://dx.doi.org/10.1002/pmic.200701008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771417PMC
February 2009

Improved workup for glycosaminoglycan disaccharide analysis using CE with LIF detection.

Electrophoresis 2008 Nov;29(22):4538-48

Department of Biochemistry, Boston University School of Medicine, Boston, MA 02118, USA.

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http://dx.doi.org/10.1002/elps.200800335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2810710PMC
November 2008