Publications by authors named "Joseph W Carlson"

67Publications

Prognostic impact of tumor budding in endometrial carcinoma within distinct molecular subgroups.

Mod Pathol 2020 Jul 29. Epub 2020 Jul 29.

Institute of Pathology, University Bern Murtenstrasse 31, 3008, Bern, Switzerland.

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http://dx.doi.org/10.1038/s41379-020-0626-9DOI Listing
July 2020

Interpretation of somatic POLE mutations in endometrial carcinoma.

J Pathol 2020 03 29;250(3):323-335. Epub 2020 Jan 29.

Department of Pathology and Laboratory Medicine, University of British Columbia and Vancouver General Hospital, Vancouver, Canada.

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http://dx.doi.org/10.1002/path.5372DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7065171PMC
March 2020

MMP14 in Sarcoma: A Regulator of Tumor Microenvironment Communication in Connective Tissues.

Cells 2019 08 28;8(9). Epub 2019 Aug 28.

Department of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, 17177 Stockholm, Sweden.

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http://dx.doi.org/10.3390/cells8090991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770050PMC
August 2019

Flowering plant immune repertoires expand under mycorrhizal symbiosis.

Plant Direct 2019 Mar 5;3(3):e00125. Epub 2019 Mar 5.

Department of Environmental Science Bard College at Simon's Rock Great Barrington Massachusetts.

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http://dx.doi.org/10.1002/pld3.125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6508770PMC
March 2019

High-Grade Endometrial Carcinomas: Classification with Molecular Insights.

Surg Pathol Clin 2019 Jun;12(2):343-362

Department of Oncology-Pathology, Karolinska Institutet, Stockholm SE-17176, Sweden; Department of Clinical Pathology and Cytology, Karolinska University Hospital, Radiumhemmet P1:02, Stockholm SE-17176, Sweden.

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http://dx.doi.org/10.1016/j.path.2019.02.003DOI Listing
June 2019

Phenotype of POLE-mutated endometrial cancer.

PLoS One 2019 27;14(3):e0214318. Epub 2019 Mar 27.

Department of Oncology-Pathology, Karolinska Institutet, and Department of Pathology and Cytology, Karolinska University Hospital, Stockholm, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214318PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436745PMC
December 2019

Mifepristone mediates anti-proliferative effect on ovarian mesenchymal stem/stromal cells from female BRCA carriers.

Acta Obstet Gynecol Scand 2019 02 15;98(2):250-261. Epub 2018 Nov 15.

Division of Obstetrics and Gynecology, Department of Women's and Children's Health, Karolinska Institutet and Karolinska University Hospital, Stockholm, Sweden.

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http://doi.wiley.com/10.1111/aogs.13485
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http://dx.doi.org/10.1111/aogs.13485DOI Listing
February 2019

Human cytomegalovirus in high grade serous ovarian cancer possible implications for patients survival.

Medicine (Baltimore) 2018 Jan;97(4):e9685

Department of Medicine Solna, Unit of Microbial Pathogenesis and Department of Neurology, Centre for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1097/MD.0000000000009685DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5794372PMC
January 2018

Pembrolizumab is effective for drug-resistant gestational trophoblastic neoplasia.

Lancet 2017 11;390(10110):2343-2345

Department of Medical Oncology, Charing Cross Gestational Trophoblastic Disease Centre, Charing Cross Hospital, Imperial College London, London W6 8RF, UK. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S01406736173289
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http://dx.doi.org/10.1016/S0140-6736(17)32894-5DOI Listing
November 2017

Gene Expression Signatures and Immunohistochemical Subtypes Add Prognostic Value to Each Other in Breast Cancer Cohorts.

Clin Cancer Res 2017 Dec 29;23(24):7512-7520. Epub 2017 Sep 29.

Department of Oncology and Pathology, Cancer Center Karolinska, Karolinska Institutet and University Hospital, Stockholm, Sweden.

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http://dx.doi.org/10.1158/1078-0432.CCR-17-1535DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5822691PMC
December 2017

Validation of a Mitotic Index Cutoff as a Prognostic Marker in Undifferentiated Uterine Sarcomas.

Am J Surg Pathol 2017 Sep;41(9):1231-1237

*Department of Oncology-Pathology, Karolinska Institutet †Department of Pathology and Cytology, Karolinska University Hospital, Stockholm §Department of Pathology, Skåne University Hospital, Lund ¶StatSoft Scandinavia AB, Uppsala, Sweden Departments of ‡Gynecologic Oncology #Pathology, Norwegian Radium Hospital, Oslo University Hospital **Institute for Clinical Medicine, the Medical Faculty, University of Oslo, Oslo, Norway ∥Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN.

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http://dx.doi.org/10.1097/PAS.0000000000000894DOI Listing
September 2017

Robot-assisted laparoscopy versus laparotomy for infrarenal paraaortic lymphadenectomy in women with high-risk endometrial cancer: A randomised controlled trial.

Eur J Cancer 2017 07 29;79:81-89. Epub 2017 Apr 29.

Department of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden; Division of Obstetrics and Gynecology, Karolinska University Hospital, Stockholm, Sweden.

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http://dx.doi.org/10.1016/j.ejca.2017.03.038DOI Listing
July 2017

A Selective Biomarker Panel Increases the Reproducibility and the Accuracy in Endometrial Biopsy Diagnosis.

Int J Gynecol Pathol 2017 Jul;36(4):339-347

Department of Pathology and Cytology and Institution for Oncology-Pathology (D.N., E.S., J.W.C), Karolinska University Hospital and Karolinska Institutet, Stockholm Equalis (K.-L.W.) Statsoft AB (J.S.), Uppsala Department of Pathology (A.M.), Lund University Hospital, Lund Department of Pathology (C.M.), Sahlgrenska University Hospital, Gothenburg Department of Pathology (J.B.), Linköping University Hospital, Linköping, Sweden Department of Public Health and General Practice (M.V.), Norwegian University of Science and Technology Department of Pathology and Medical Genetics (A.B.A.), St Olavs Hospital, Trondheim University Hospital, Trondheim Department of Pathology (B.D.), Oslo University Hospital, Norwegian Radium Hospital, and Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo Department of Pathology (B.I.B.), Haukeland University Hospital, Bergen, Norway Department of Pathology (M.L.), Herlev University Hospital, Herlev Department of Pathology (A.G.), Aalborg University Hospital, Aalborg, Denmark Department of Pathology (A.L., E.L.-B.), Oulu University Hospital, Oulu Department of Pathology (O.C.), University of Turku and Turku University Hospital, Turku, Finland.

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http://dx.doi.org/10.1097/PGP.0000000000000334DOI Listing
July 2017

Serous tubal intraepithelial carcinoma, chronic fallopian tube injury, and serous carcinoma development.

Virchows Arch 2016 Jun 22;468(6):707-13. Epub 2016 Mar 22.

Department of Oncology-Pathology, Karolinska Institutet and Department of Pathology, Karolinska University Hospital, Stockholm, Sweden.

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http://dx.doi.org/10.1007/s00428-016-1928-7DOI Listing
June 2016

An Immunohistochemical Algorithm for Ovarian Carcinoma Typing.

Int J Gynecol Pathol 2016 Sep;35(5):430-41

Calgary Laboratory Services/Alberta Health Services (M.K., P.F.R., C.N., S.L.), Department of Pathology and Laboratory Medicine, Foothill Medical Center, University of Calgary, Calgary Department of Laboratory Medicine and Pathology (X.L., C.A.E., C.-H.L.), University of Alberta, Edmonton, AB Centre de recherche du (K.R., C.L.P., L.M., M.d.L., D.P., A.-M.M.M.), Centre hospitalier de l'Université de Montréal (CRCHUM) Departments of Pathology (K.R.) Obstetric-Gynecology (D.P.) Medicine (A.-M.M.M.), Université de Montréal Institut du cancer de Montréal (C.L.P., L.M., M.d.L., D.P., A.-M.M.M.), Montreal, QC Department of Pathology (S.L., D.H., C.B.G.), University of British Columbia, Vancouver, BC Department of Cellular and Molecular Medicine (B.V.), University of Ottawa, ON, Canada Department of Pathology (P.F.R.), Catholic University of Health and Allied Sciences-Bugando, Mwanza, Tanzania Department of Health Sciences Research (E.L.G.), Mayo Clinic, Rochester, Minnesota Department of Preventive Medicine (S.J.R.), Keck School of Medicine, USC/Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, California Department of Pathology and Cytology (J.W.C.), Institution for Oncology-Pathology, Karolinska University Hospital, Stockholm, Sweden Department of Public Health Sciences (L.E.K.), College of Medicine, Medical University of South Carolina Hollings Cancer Center (L.E.K.), Medical University of South Carolina, Charleston, South Carolina.

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http://dx.doi.org/10.1097/PGP.0000000000000274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4978603PMC
September 2016

A Cell Type Independent Binary Grading System Does Not Significantly Improve Endometrial Biopsy Interpretation.

Int J Gynecol Pathol 2016 May;35(3):256-63

Departments of Pathology and Cytology (D.N., F.K., J.W.C.)Oncology (H.D.), Karolinska University HospitalInstitution for Oncology-Pathology (D.N., F.K., H.D., J.W.C.), Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1097/PGP.0000000000000239DOI Listing
May 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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http://dx.doi.org/10.1093/nar/gkv350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294PMC
July 2015

A prognosis based classification of undifferentiated uterine sarcomas: identification of mitotic index, hormone receptors and YWHAE-FAM22 translocation status as predictors of survival.

Int J Cancer 2015 Apr 27;136(7):1608-18. Epub 2014 Aug 27.

Department of Immunology, Genetics and Pathology, Uppsala University, S-751 85, Uppsala, Sweden; Science for Life Laboratory, Uppsala University, S-751 85, Uppsala, Sweden.

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http://dx.doi.org/10.1002/ijc.29141DOI Listing
April 2015

Evaluation of the fallopian tubes after neoadjuvant chemotherapy: persistence of serous tubal intraepithelial carcinoma.

Int J Gynecol Pathol 2014 Sep;33(5):463-9

Department of Pathology and Cytology, Karolinska University Hospital (E.C, J.W.C) Institution for Oncology-Pathology, Karolinska Institutet (E.C, J.W.C), Stockholm, Sweden.

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http://dx.doi.org/10.1097/PGP.0b013e3182a142c2DOI Listing
September 2014

Multi-level gene expression signatures, but not binary, outperform Ki67 for the long term prognostication of breast cancer patients.

Mol Oncol 2014 May 28;8(3):741-52. Epub 2014 Feb 28.

Cancer Center Karolinska, Karolinska Institutet and University Hospital, S-171 76 Stockholm, Sweden.

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http://dx.doi.org/10.1016/j.molonc.2014.02.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5528643PMC
May 2014

Diagnosis of endometrial stromal tumors: a clinicopathologic study of 25 biopsy specimens with identification of problematic areas.

Am J Clin Pathol 2014 Jan;141(1):133-9

Institution for Oncology-Pathology, Cancer Centrum Karolinska R8:05, Karolinska Institutet, Stockholm, Sweden, 17176; e-mail:

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http://dx.doi.org/10.1309/AJCPXD0TPYSNVI8IDOI Listing
January 2014

Ovarian carcinoma histotype determination is highly reproducible, and is improved through the use of immunohistochemistry.

Histopathology 2014 Jun 7;64(7):1004-13. Epub 2014 Mar 7.

Department of Pathology and Laboratory Medicine, Calgary Laboratory Services and University of Calgary, Calgary, AB, Canada.

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http://dx.doi.org/10.1111/his.12349DOI Listing
June 2014

Correlation of HLA-A02* genotype and HLA class I antigen down-regulation with the prognosis of epithelial ovarian cancer.

Cancer Immunol Immunother 2012 Aug 19;61(8):1243-53. Epub 2012 Jan 19.

Department of Oncology-Pathology, Karolinska Institute, Radiumhemmet, Karolinska University Hospital, Stockholm, Sweden.

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http://dx.doi.org/10.1007/s00262-012-1201-0DOI Listing
August 2012

Prevalence of human papillomavirus (HPV) types in cervical cancer 2003-2008 in Stockholm, Sweden, before public HPV vaccination.

Acta Oncol 2011 Nov 5;50(8):1215-9. Epub 2011 Jul 5.

Department of Oncology-Pathology Karolinska Institutet, Karolinska University Hospital Solna, Stockholm, Sweden.

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http://dx.doi.org/10.3109/0284186X.2011.584556DOI Listing
November 2011

The Drosophila gene disruption project: progress using transposons with distinctive site specificities.

Genetics 2011 Jul 21;188(3):731-43. Epub 2011 Apr 21.

Howard Hughes Medical Institute, Department of Molecular and Human Genetics, Program in Developmental Biology, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1534/genetics.111.126995DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176542PMC
July 2011

Development of expression-ready constructs for generation of proteomic libraries.

Methods Mol Biol 2011 ;723:257-72

Department of Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

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http://dx.doi.org/10.1007/978-1-61779-043-0_17DOI Listing
June 2011

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Science 2010 Dec 22;330(6012):1787-97. Epub 2010 Dec 22.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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http://compbio.mit.edu/publications/46_modENCODE_Science_10.
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http://www.sciencemag.org/cgi/doi/10.1126/science.1198374
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http://dx.doi.org/10.1126/science.1198374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192495PMC
December 2010

A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.

Genetics 2010 Dec 27;186(4):1111-25. Epub 2010 Sep 27.

Department of Molecular and Human Genetics, Howard Hughes Medical Institute, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1534/genetics.110.121285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998297PMC
December 2010

Serous tubal intraepithelial carcinoma: diagnostic reproducibility and its implications.

Int J Gynecol Pathol 2010 Jul;29(4):310-4

Division of Women's and Perinatal Pathology, Department of Pathology, Brigham and Women's Hospital, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1097/PGP.0b013e3181c713a8DOI Listing
July 2010

Partners in pathology: a collaborative model to bring pathology to resource poor settings.

Am J Surg Pathol 2010 Jan;34(1):118-23

Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.

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http://dx.doi.org/10.1097/PAS.0b013e3181c17fe6DOI Listing
January 2010

Coexisting intraepithelial serous carcinomas of the endometrium and fallopian tube: frequency and potential significance.

Int J Gynecol Pathol 2009 Jul;28(4):308-15

Department of Pathology, Division of Women's and Perinatal Pathology, Brigham and Women's Hospital, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.

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https://insights.ovid.com/crossref?an=00004347-200907000-000
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http://dx.doi.org/10.1097/PGP.0b013e3181934390DOI Listing
July 2009

MRI-directed, wire-localized breast excisions: incidence of malignancy and recommendations for pathologic evaluation.

Hum Pathol 2007 Dec 14;38(12):1754-9. Epub 2007 Sep 14.

Department of Pathology, Brigham and Women's Hospital, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.humpath.2007.04.017DOI Listing
December 2007

Breast MRI wire-guided excisional biopsy: specimen size as compared to mammogram wire-guided excisional biopsy and implications for use.

Ann Surg Oncol 2007 Dec 11;14(12):3352-8. Epub 2007 Sep 11.

Department of Surgery, Brigham and Women's Hospital, Boston, MA, USA.

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http://dx.doi.org/10.1245/s10434-007-9543-0DOI Listing
December 2007

High-throughput plasmid cDNA library screening.

Nat Protoc 2006 ;1(2):624-32

Department of Genome Sciences, Earnest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1038/nprot.2006.90DOI Listing
September 2007

RNA editing in Drosophila melanogaster: New targets and functional consequences.

RNA 2006 Nov 3;12(11):1922-32. Epub 2006 Oct 3.

Berkeley Drosophila Genome Project, Department of Genome Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1261/rna.254306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1624909PMC
November 2006

Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP).

Nucleic Acids Res 2005 Dec 2;33(21):e185. Epub 2005 Dec 2.

Berkeley Drosophila Genome Project, Department of Genome Biology, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1093/nar/gni184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1301602PMC
December 2005

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

Bioinformatics 2005 Apr 30;21(8):1747-9. Epub 2004 Nov 30.

Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti173DOI Listing
April 2005

The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes.

Genetics 2004 Jun;167(2):761-81

Department of Molecular and Human Genetics, Howard Hughes Medical Institute, Program in Developmental Biology, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1534/genetics.104.026427DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1470905PMC
June 2004

Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?

Genetica 2003 Mar;117(2-3):227-37

Departamento de Genética, Universidade Federal do Rio de Janeiro, Caixa Postal 68011 CEP 21944-970, Rio de Janeiro, Brazil.

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http://dx.doi.org/10.1023/a:1022900313650DOI Listing
March 2003