Publications by authors named "Josef Spidlen"

29Publications

Data File Standard for Flow Cytometry, Version FCS 3.2.

Cytometry A 2020 Sep 3. Epub 2020 Sep 3.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1002/cyto.a.24225DOI Listing
September 2020

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Authors:
Andrea Cossarizza Hyun-Dong Chang Andreas Radbruch Andreas Acs Dieter Adam Sabine Adam-Klages William W Agace Nima Aghaeepour Mübeccel Akdis Matthieu Allez Larissa Nogueira Almeida Giorgia Alvisi Graham Anderson Immanuel Andrä Francesco Annunziato Achille Anselmo Petra Bacher Cosima T Baldari Sudipto Bari Vincenzo Barnaba Joana Barros-Martins Luca Battistini Wolfgang Bauer Sabine Baumgart Nicole Baumgarth Dirk Baumjohann Bianka Baying Mary Bebawy Burkhard Becher Wolfgang Beisker Vladimir Benes Rudi Beyaert Alfonso Blanco Dominic A Boardman Christian Bogdan Jessica G Borger Giovanna Borsellino Philip E Boulais Jolene A Bradford Dirk Brenner Ryan R Brinkman Anna E S Brooks Dirk H Busch Martin Büscher Timothy P Bushnell Federica Calzetti Garth Cameron Ilenia Cammarata Xuetao Cao Susanna L Cardell Stefano Casola Marco A Cassatella Andrea Cavani Antonio Celada Lucienne Chatenoud Pratip K Chattopadhyay Sue Chow Eleni Christakou Luka Čičin-Šain Mario Clerici Federico S Colombo Laura Cook Anne Cooke Andrea M Cooper Alexandra J Corbett Antonio Cosma Lorenzo Cosmi Pierre G Coulie Ana Cumano Ljiljana Cvetkovic Van Duc Dang Chantip Dang-Heine Martin S Davey Derek Davies Sara De Biasi Genny Del Zotto Gelo Victoriano Dela Cruz Michael Delacher Silvia Della Bella Paolo Dellabona Günnur Deniz Mark Dessing James P Di Santo Andreas Diefenbach Francesco Dieli Andreas Dolf Thomas Dörner Regine J Dress Diana Dudziak Michael Dustin Charles-Antoine Dutertre Friederike Ebner Sidonia B G Eckle Matthias Edinger Pascale Eede Götz R A Ehrhardt Marcus Eich Pablo Engel Britta Engelhardt Anna Erdei Charlotte Esser Bart Everts Maximilien Evrard Christine S Falk Todd A Fehniger Mar Felipo-Benavent Helen Ferry Markus Feuerer Andrew Filby Kata Filkor Simon Fillatreau Marie Follo Irmgard Förster John Foster Gemma A Foulds Britta Frehse Paul S Frenette Stefan Frischbutter Wolfgang Fritzsche David W Galbraith Anastasia Gangaev Natalio Garbi Brice Gaudilliere Ricardo T Gazzinelli Jens Geginat Wilhelm Gerner Nicholas A Gherardin Kamran Ghoreschi Lara Gibellini Florent Ginhoux Keisuke Goda Dale I Godfrey Christoph Goettlinger Jose M González-Navajas Carl S Goodyear Andrea Gori Jane L Grogan Daryl Grummitt Andreas Grützkau Claudia Haftmann Jonas Hahn Hamida Hammad Günter Hämmerling Leo Hansmann Goran Hansson Christopher M Harpur Susanne Hartmann Andrea Hauser Anja E Hauser David L Haviland David Hedley Daniela C Hernández Guadalupe Herrera Martin Herrmann Christoph Hess Thomas Höfer Petra Hoffmann Kristin Hogquist Tristan Holland Thomas Höllt Rikard Holmdahl Pleun Hombrink Jessica P Houston Bimba F Hoyer Bo Huang Fang-Ping Huang Johanna E Huber Jochen Huehn Michael Hundemer Christopher A Hunter William Y K Hwang Anna Iannone Florian Ingelfinger Sabine M Ivison Hans-Martin Jäck Peter K Jani Beatriz Jávega Stipan Jonjic Toralf Kaiser Tomas Kalina Thomas Kamradt Stefan H E Kaufmann Baerbel Keller Steven L C Ketelaars Ahad Khalilnezhad Srijit Khan Jan Kisielow Paul Klenerman Jasmin Knopf Hui-Fern Koay Katja Kobow Jay K Kolls Wan Ting Kong Manfred Kopf Thomas Korn Katharina Kriegsmann Hendy Kristyanto Thomas Kroneis Andreas Krueger Jenny Kühne Christian Kukat Désirée Kunkel Heike Kunze-Schumacher Tomohiro Kurosaki Christian Kurts Pia Kvistborg Immanuel Kwok Jonathan Landry Olivier Lantz Paola Lanuti Francesca LaRosa Agnès Lehuen Salomé LeibundGut-Landmann Michael D Leipold Leslie Y T Leung Megan K Levings Andreia C Lino Francesco Liotta Virginia Litwin Yanling Liu Hans-Gustaf Ljunggren Michael Lohoff Giovanna Lombardi Lilly Lopez Miguel López-Botet Amy E Lovett-Racke Erik Lubberts Herve Luche Burkhard Ludewig Enrico Lugli Sebastian Lunemann Holden T Maecker Laura Maggi Orla Maguire Florian Mair Kerstin H Mair Alberto Mantovani Rudolf A Manz Aaron J Marshall Alicia Martínez-Romero Glòria Martrus Ivana Marventano Wlodzimierz Maslinski Giuseppe Matarese Anna Vittoria Mattioli Christian Maueröder Alessio Mazzoni James McCluskey Mairi McGrath Helen M McGuire Iain B McInnes Henrik E Mei Fritz Melchers Susanne Melzer Dirk Mielenz Stephen D Miller Kingston H G Mills Hans Minderman Jenny Mjösberg Jonni Moore Barry Moran Lorenzo Moretta Tim R Mosmann Susann Müller Gabriele Multhoff Luis Enrique Muñoz Christian Münz Toshinori Nakayama Milena Nasi Katrin Neumann Lai Guan Ng Antonia Niedobitek Sussan Nourshargh Gabriel Núñez José-Enrique O'Connor Aaron Ochel Anna Oja Diana Ordonez Alberto Orfao Eva Orlowski-Oliver Wenjun Ouyang Annette Oxenius Raghavendra Palankar Isabel Panse Kovit Pattanapanyasat Malte Paulsen Dinko Pavlinic Livius Penter Pärt Peterson Christian Peth Jordi Petriz Federica Piancone Winfried F Pickl Silvia Piconese Marcello Pinti A Graham Pockley Malgorzata Justyna Podolska Zhiyong Poon Katharina Pracht Immo Prinz Carlo E M Pucillo Sally A Quataert Linda Quatrini Kylie M Quinn Helena Radbruch Tim R D J Radstake Susann Rahmig Hans-Peter Rahn Bartek Rajwa Gevitha Ravichandran Yotam Raz Jonathan A Rebhahn Diether Recktenwald Dorothea Reimer Caetano Reis e Sousa Ester B M Remmerswaal Lisa Richter Laura G Rico Andy Riddell Aja M Rieger J Paul Robinson Chiara Romagnani Anna Rubartelli Jürgen Ruland Armin Saalmüller Yvan Saeys Takashi Saito Shimon Sakaguchi Francisco Sala-de-Oyanguren Yvonne Samstag Sharon Sanderson Inga Sandrock Angela Santoni Ramon Bellmàs Sanz Marina Saresella Catherine Sautes-Fridman Birgit Sawitzki Linda Schadt Alexander Scheffold Hans U Scherer Matthias Schiemann Frank A Schildberg Esther Schimisky Andreas Schlitzer Josephine Schlosser Stephan Schmid Steffen Schmitt Kilian Schober Daniel Schraivogel Wolfgang Schuh Thomas Schüler Reiner Schulte Axel Ronald Schulz Sebastian R Schulz Cristiano Scottá Daniel Scott-Algara David P Sester T Vincent Shankey Bruno Silva-Santos Anna Katharina Simon Katarzyna M Sitnik Silvano Sozzani Daniel E Speiser Josef Spidlen Anders Stahlberg Alan M Stall Natalie Stanley Regina Stark Christina Stehle Tobit Steinmetz Hannes Stockinger Yousuke Takahama Kiyoshi Takeda Leonard Tan Attila Tárnok Gisa Tiegs Gergely Toldi Julia Tornack Elisabetta Traggiai Mohamed Trebak Timothy I M Tree Joe Trotter John Trowsdale Maria Tsoumakidou Henning Ulrich Sophia Urbanczyk Willem van de Veen Maries van den Broek Edwin van der Pol Sofie Van Gassen Gert Van Isterdael René A W van Lier Marc Veldhoen Salvador Vento-Asturias Paulo Vieira David Voehringer Hans-Dieter Volk Anouk von Borstel Konrad von Volkmann Ari Waisman Rachael V Walker Paul K Wallace Sa A Wang Xin M Wang Michael D Ward Kirsten A Ward-Hartstonge Klaus Warnatz Gary Warnes Sarah Warth Claudia Waskow James V Watson Carsten Watzl Leonie Wegener Thomas Weisenburger Annika Wiedemann Jürgen Wienands Anneke Wilharm Robert John Wilkinson Gerald Willimsky James B Wing Rieke Winkelmann Thomas H Winkler Oliver F Wirz Alicia Wong Peter Wurst Jennie H M Yang Juhao Yang Maria Yazdanbakhsh Liping Yu Alice Yue Hanlin Zhang Yi Zhao Susanne Maria Ziegler Christina Zielinski Jakob Zimmermann Arturo Zychlinsky

Eur J Immunol 2019 Oct;49(10):1457-1973

Max Planck Institute for Infection Biology, Berlin, Germany.

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http://dx.doi.org/10.1002/eji.201970107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7350392PMC
October 2019

Methodology for evaluating and comparing flow cytometers: A multisite study of 23 instruments.

Cytometry A 2018 11 23;93(11):1087-1091. Epub 2018 Sep 23.

Wake Forest University Baptist Medical Center, Comprehensive Cancer Center and Department of Cancer Biology, Winston-Salem, North Carolina.

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http://dx.doi.org/10.1002/cyto.a.23605DOI Listing
November 2018

Guidelines for the use of flow cytometry and cell sorting in immunological studies.

Authors:
Andrea Cossarizza Hyun-Dong Chang Andreas Radbruch Mübeccel Akdis Immanuel Andrä Francesco Annunziato Petra Bacher Vincenzo Barnaba Luca Battistini Wolfgang M Bauer Sabine Baumgart Burkhard Becher Wolfgang Beisker Claudia Berek Alfonso Blanco Giovanna Borsellino Philip E Boulais Ryan R Brinkman Martin Büscher Dirk H Busch Timothy P Bushnell Xuetao Cao Andrea Cavani Pratip K Chattopadhyay Qingyu Cheng Sue Chow Mario Clerici Anne Cooke Antonio Cosma Lorenzo Cosmi Ana Cumano Van Duc Dang Derek Davies Sara De Biasi Genny Del Zotto Silvia Della Bella Paolo Dellabona Günnur Deniz Mark Dessing Andreas Diefenbach James Di Santo Francesco Dieli Andreas Dolf Vera S Donnenberg Thomas Dörner Götz R A Ehrhardt Elmar Endl Pablo Engel Britta Engelhardt Charlotte Esser Bart Everts Anita Dreher Christine S Falk Todd A Fehniger Andrew Filby Simon Fillatreau Marie Follo Irmgard Förster John Foster Gemma A Foulds Paul S Frenette David Galbraith Natalio Garbi Maria Dolores García-Godoy Jens Geginat Kamran Ghoreschi Lara Gibellini Christoph Goettlinger Carl S Goodyear Andrea Gori Jane Grogan Mor Gross Andreas Grützkau Daryl Grummitt Jonas Hahn Quirin Hammer Anja E Hauser David L Haviland David Hedley Guadalupe Herrera Martin Herrmann Falk Hiepe Tristan Holland Pleun Hombrink Jessica P Houston Bimba F Hoyer Bo Huang Christopher A Hunter Anna Iannone Hans-Martin Jäck Beatriz Jávega Stipan Jonjic Kerstin Juelke Steffen Jung Toralf Kaiser Tomas Kalina Baerbel Keller Srijit Khan Deborah Kienhöfer Thomas Kroneis Désirée Kunkel Christian Kurts Pia Kvistborg Joanne Lannigan Olivier Lantz Anis Larbi Salome LeibundGut-Landmann Michael D Leipold Megan K Levings Virginia Litwin Yanling Liu Michael Lohoff Giovanna Lombardi Lilly Lopez Amy Lovett-Racke Erik Lubberts Burkhard Ludewig Enrico Lugli Holden T Maecker Glòria Martrus Giuseppe Matarese Christian Maueröder Mairi McGrath Iain McInnes Henrik E Mei Fritz Melchers Susanne Melzer Dirk Mielenz Kingston Mills David Mirrer Jenny Mjösberg Jonni Moore Barry Moran Alessandro Moretta Lorenzo Moretta Tim R Mosmann Susann Müller Werner Müller Christian Münz Gabriele Multhoff Luis Enrique Munoz Kenneth M Murphy Toshinori Nakayama Milena Nasi Christine Neudörfl John Nolan Sussan Nourshargh José-Enrique O'Connor Wenjun Ouyang Annette Oxenius Raghav Palankar Isabel Panse Pärt Peterson Christian Peth Jordi Petriz Daisy Philips Winfried Pickl Silvia Piconese Marcello Pinti A Graham Pockley Malgorzata Justyna Podolska Carlo Pucillo Sally A Quataert Timothy R D J Radstake Bartek Rajwa Jonathan A Rebhahn Diether Recktenwald Ester B M Remmerswaal Katy Rezvani Laura G Rico J Paul Robinson Chiara Romagnani Anna Rubartelli Beate Ruckert Jürgen Ruland Shimon Sakaguchi Francisco Sala-de-Oyanguren Yvonne Samstag Sharon Sanderson Birgit Sawitzki Alexander Scheffold Matthias Schiemann Frank Schildberg Esther Schimisky Stephan A Schmid Steffen Schmitt Kilian Schober Thomas Schüler Axel Ronald Schulz Ton Schumacher Cristiano Scotta T Vincent Shankey Anat Shemer Anna-Katharina Simon Josef Spidlen Alan M Stall Regina Stark Christina Stehle Merle Stein Tobit Steinmetz Hannes Stockinger Yousuke Takahama Attila Tarnok ZhiGang Tian Gergely Toldi Julia Tornack Elisabetta Traggiai Joe Trotter Henning Ulrich Marlous van der Braber René A W van Lier Marc Veldhoen Salvador Vento-Asturias Paulo Vieira David Voehringer Hans-Dieter Volk Konrad von Volkmann Ari Waisman Rachael Walker Michael D Ward Klaus Warnatz Sarah Warth James V Watson Carsten Watzl Leonie Wegener Annika Wiedemann Jürgen Wienands Gerald Willimsky James Wing Peter Wurst Liping Yu Alice Yue Qianjun Zhang Yi Zhao Susanne Ziegler Jakob Zimmermann

Eur J Immunol 2017 10;47(10):1584-1797

Maurice Müller Laboratories (DKF), Universitätsklinik für Viszerale Chirurgie und Medizin Inselspital, University of Bern, Murtenstrasse, Bern.

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http://doi.wiley.com/10.1002/eji.201646632
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http://dx.doi.org/10.1002/eji.201646632DOI Listing
October 2017

Use FlowRepository to share your clinical data upon study publication.

Cytometry B Clin Cytom 2018 01 8;94(1):196-198. Epub 2016 Jul 8.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://doi.wiley.com/10.1002/cyto.b.21393
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http://dx.doi.org/10.1002/cyto.b.21393DOI Listing
January 2018

flowClean: Automated identification and removal of fluorescence anomalies in flow cytometry data.

Cytometry A 2016 05 18;89(5):461-71. Epub 2016 Mar 18.

Vaccine Research Center, National Institutes of Allergy and Infectious Disease, National Institutes of Health, Baltimore, Maryland.

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http://dx.doi.org/10.1002/cyto.a.22837DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5522377PMC
May 2016

ISAC's Gating-ML 2.0 data exchange standard for gating description.

Cytometry A 2015 Jul 14;87(7):683-7. Epub 2015 May 14.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1002/cyto.a.22690DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874733PMC
July 2015

ISAC's classification results file format.

Cytometry A 2015 Jan 18;87(1):86-8. Epub 2014 Nov 18.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1002/cyto.a.22586DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874736PMC
January 2015

Flow cytometry bioinformatics.

PLoS Comput Biol 2013 5;9(12):e1003365. Epub 2013 Dec 5.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada ; Department of Medical Genetics, University of British Columbia, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1371/journal.pcbi.1003365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867282PMC
August 2014

ICEFormat-the image cytometry experiment format.

Cytometry A 2012 Dec 8;81(12):1015-8. Epub 2012 Oct 8.

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http://dx.doi.org/10.1002/cyto.a.22212DOI Listing
December 2012

FlowRepository: a resource of annotated flow cytometry datasets associated with peer-reviewed publications.

Cytometry A 2012 Sep 6;81(9):727-31. Epub 2012 Aug 6.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1002/cyto.a.22106DOI Listing
September 2012

FCS 3.1 Implementation guidance.

Cytometry A 2012 Jun 25;81(6):523-6. Epub 2012 Jan 25.

Verity Software House, Topsham, Maine, USA.

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http://dx.doi.org/10.1002/cyto.a.22018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3676281PMC
June 2012

Flow cytometry data standards.

BMC Res Notes 2011 Mar 7;4:50. Epub 2011 Mar 7.

Terry Fox Laboratory, BC Cancer Agency, Vancouver, BC, Canada.

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http://dx.doi.org/10.1186/1756-0500-4-50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060130PMC
March 2011

FuGEFlow: data model and markup language for flow cytometry.

BMC Bioinformatics 2009 Jun 16;10:184. Epub 2009 Jun 16.

Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA.

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http://dx.doi.org/10.1186/1471-2105-10-184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2711079PMC
June 2009

flowCore: a Bioconductor package for high throughput flow cytometry.

BMC Bioinformatics 2009 Apr 9;10:106. Epub 2009 Apr 9.

Life Sciences Department, Computational Biology Program, Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109-1024, USA.

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http://www.biomedcentral.com/1471-2105/10/106
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http://dx.doi.org/10.1186/1471-2105-10-106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2684747PMC
April 2009

Gating-ML: XML-based gating descriptions in flow cytometry.

Cytometry A 2008 Dec;73A(12):1151-7

Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1002/cyto.a.20637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2585156PMC
December 2008

Flexible information storage in MUDR(II) EHR.

Int J Med Inform 2006 Mar-Apr;75(3-4):201-8. Epub 2005 Oct 25.

European Centre of Medical Informatics, Statistics and Epidemiology, Institute of Computer Science, Academy of Sciences of the Czech Republic, Pod Vodarenskou vezi 2, 182 07 Prague 8, Czech Republic.

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http://dx.doi.org/10.1016/j.ijmedinf.2005.07.044DOI Listing
August 2006

Obstacles to Implementing an Execution Engine for Clinical Guidelines Formalized in GLIF.

Stud Health Technol Inform 2005 ;116:563-8

EuroMISE Centre, Institute of Computer Science AS CR, Department of the Medical Informatics, Prague, Czech Republic.

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April 2016

MUDRLite - health record tailored to your particular needs.

Stud Health Technol Inform 2004 ;105:202-9

EuroMISE Centre - Cardio, Institute of Computer Science AS CR, Pod Vodarenskou vezi 2, 182 07 Prague 8, Czech Republic.

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March 2005

Universal electronic health record MUDR.

Stud Health Technol Inform 2004 ;105:190-201

EuroMISE Center - Cardio, Institute of Computer Science AS CR, Pod Vodarenskou vezi 2, 182 07, Prague 8, Czech Republic.

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March 2005

User interface of MUDR electronic health record.

Int J Med Inform 2005 Mar;74(2-4):221-7

EuroMISE Center--Cardio, Institute of Computer Science AS CR, Pod Vodarenskou vezi 2, 18207 Prague 8, Czech Republic. petr.hanzlicek@euromise

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http://dx.doi.org/10.1016/j.ijmedinf.2004.06.003DOI Listing
March 2005