Jose M Muino

Jose M Muino

UNVERIFIED PROFILE

Are you Jose M Muino?   Register this Author

Register author
Jose M Muino

Jose M Muino

Publications by authors named "Jose M Muino"

Are you Jose M Muino?   Register this Author

28Publications

479Reads

33Profile Views

PUMPKIN, the Sole Plastid UMP Kinase, Associates with Group II Introns and Alters Their Metabolism.

Plant Physiol 2019 01 8;179(1):248-264. Epub 2018 Nov 8.

Plant Sciences, Faculty of Biology, Ludwig-Maximilians-University Munich, Großhaderner Street 2-4, 82152 Planegg-Martinsried, Germany

View Article

Download full-text PDF

Source
http://www.plantphysiol.org/lookup/doi/10.1104/pp.18.00687
Publisher Site
http://dx.doi.org/10.1104/pp.18.00687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324238PMC
January 2019

Transcriptomic basis for reinforcement of elm antiherbivore defence mediated by insect egg deposition.

Mol Ecol 2018 12 22;27(23):4901-4915. Epub 2018 Nov 22.

Institute of Biology, Freie Universität Berlin, Berlin, Germany.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1111/mec.14900
Publisher Site
http://dx.doi.org/10.1111/mec.14900DOI Listing
December 2018

PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity.

BMC Plant Biol 2018 Dec 22;18(1):368. Epub 2018 Dec 22.

Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, Philippstraße 13, 10115, Berlin, Germany.

View Article

Download full-text PDF

Source
https://bmcplantbiol.biomedcentral.com/articles/10.1186/s128
Publisher Site
http://dx.doi.org/10.1186/s12870-018-1574-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303913PMC
December 2018

Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.

Methods Mol Biol 2018 ;1675:167-181

Institute for Biology, Plant Cell and Molecular Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-4939-7318-7_11
Publisher Site
http://dx.doi.org/10.1007/978-1-4939-7318-7_11DOI Listing
June 2018

Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin.

Nat Commun 2018 04 24;9(1):1636. Epub 2018 Apr 24.

Max Planck Institute for Molecular Genetics, 14195, Berlin, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-018-04100-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915440PMC
April 2018

The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.

Plant Physiol 2017 Oct 22;175(2):848-857. Epub 2017 Aug 22.

Wageningen University and Research, Bioscience, 6708 PB Wageningen, The Netherlands

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.17.00232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619889PMC
October 2017

Differences in DNA Binding Specificity of Floral Homeotic Protein Complexes Predict Organ-Specific Target Genes.

Plant Cell 2017 Aug 21;29(8):1822-1835. Epub 2017 Jul 21.

Institute for Biochemistry and Biology, Potsdam University, Potsdam 14476, Germany

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1105/tpc.17.00145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590503PMC
August 2017

FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture.

J Exp Bot 2017 06;68(13):3391-3403

Laboratory of Molecular Biology and Business Unit Bioscience, Wageningen University & Research, 6708 PB Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/jxb/erx184DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853401PMC
June 2017

Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor.

Mol Biol Evol 2016 Jan 1;33(1):185-200. Epub 2015 Oct 1.

Institute for Biochemistry and Biology, Potsdam University, Potsdam, Germany

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msv210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4693976PMC
January 2016

Characterization of in vivo DNA-binding events of plant transcription factors by ChIP-seq: experimental protocol and computational analysis.

Methods Mol Biol 2015 ;1284:93-121

Laboratory of Molecular Biology, Wageningen University, 6708PB, Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-2444-8_5DOI Listing
November 2015

AIL and HDG proteins act antagonistically to control cell proliferation.

Development 2015 Feb 6;142(3):454-64. Epub 2015 Jan 6.

Wageningen University and Research Centre, Bioscience, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1242/dev.117168DOI Listing
February 2015

Evidence of a cancer type-specific distribution for consecutive somatic mutation distances.

Comput Biol Chem 2014 Dec 23;53 Pt A:79-83. Epub 2014 Aug 23.

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany.

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S14769271140009
Publisher Site
http://dx.doi.org/10.1016/j.compbiolchem.2014.08.012DOI Listing
December 2014

Structural determinants of DNA recognition by plant MADS-domain transcription factors.

Nucleic Acids Res 2014 Feb 25;42(4):2138-46. Epub 2013 Nov 25.

Bioscience, Plant Research International, Wageningen, PO Box 619, 6700 AP, The Netherlands, Laboratory of Bioinformatics, Wageningen University, PO Box 569, 6700 AN Wageningen, The Netherlands, Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin D-14195, Germany, Laboratory of Molecular Biology, Wageningen University, Wageningen, PO Box 633, 6700 AP, The Netherlands and Biometris, Wageningen University and Research Centre, Wageningen, PO Box 100, 6700 AC, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkt1172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3936718PMC
February 2014

Arabidopsis JAGGED links floral organ patterning to tissue growth by repressing Kip-related cell cycle inhibitors.

Proc Natl Acad Sci U S A 2014 Feb 4;111(7):2830-5. Epub 2014 Feb 4.

Cell and Developmental Biology Department, John Innes Centre, Norwich NR4 7UH, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1320457111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932912PMC
February 2014

The histone deacetylase inhibitor trichostatin a promotes totipotency in the male gametophyte.

Plant Cell 2014 Jan 24;26(1):195-209. Epub 2014 Jan 24.

Plant Research International, Bioscience, 6700 AP Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1105/tpc.113.116491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3963568PMC
January 2014

Visualizing and characterizing in vivo DNA-binding events and direct target genes of plant transcription factors.

Methods Mol Biol 2011 ;754:293-305

Business Unit Bioscience, Plant Research International, Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-154-3_17DOI Listing
December 2011

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments.

Nucleic Acids Res 2011 Jul 24;39(Web Server issue):W524-7. Epub 2011 May 24.

Applied Bioinformatics, Plant Research International, PO Box 619, 6700 AP Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://nar.oxfordjournals.org/content/early/2011/05/24/nar.g
Web Search
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkr373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125775PMC
July 2011

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions.

Plant Methods 2011 May 9;7:11. Epub 2011 May 9.

Applied Bioinformatics, Plant Research International, PO Box 619, 6700 AP Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://plantmethods.biomedcentral.com/articles/10.1186/1746-
Publisher Site
http://dx.doi.org/10.1186/1746-4811-7-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3114017PMC
May 2011

Orchestration of floral initiation by APETALA1.

Science 2010 Apr;328(5974):85-9

Business Unit Bioscience, Plant Research International, Wageningen 6700 AA, Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1185244DOI Listing
April 2010

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

Nat Protoc 2010 Mar 18;5(3):457-72. Epub 2010 Feb 18.

Laboratory of Molecular Biology, Wageningen University, Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nprot.2009.244DOI Listing
March 2010

A more flexible parametric estimation of univariate reference intervals: a new method based on the GS-distribution.

Clin Chim Acta 2007 Apr 22;379(1-2):71-80. Epub 2006 Dec 22.

Grup de Bioestadística i Biomatemàtica, Departament de Ciències Mèdiques Bàsiques, Institut de Recerca Biomèdica de Lleida, Universitat de Lleida, Montserrat Roig, 2, 25008-Lleida, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cca.2006.12.010DOI Listing
April 2007