Jose M G Izarzugaza

Jose M G Izarzugaza

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Jose M G Izarzugaza

Jose M G Izarzugaza

Publications by authors named "Jose M G Izarzugaza"

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34Publications

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Conflicting associations between dietary patterns and changes of anthropometric traits across subgroups of middle-aged women and men.

Clin Nutr 2020 Jan 14;39(1):265-275. Epub 2019 Feb 14.

Center for Biological Sequence Analysis, Technical University of Denmark, 2800 Lyngby, Denmark; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.clnu.2019.02.003DOI Listing
January 2020

Von Frey testing revisited: Provision of an online algorithm for improved accuracy of 50% thresholds.

Eur J Pain 2019 Dec 30. Epub 2019 Dec 30.

Danish Headache Center, Glostrup Research Institute, Rigshospitalet Glostrup, Denmark.

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http://dx.doi.org/10.1002/ejp.1528DOI Listing
December 2019

Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types.

NPJ Syst Biol Appl 2019 7;5:27. Epub 2019 Aug 7.

1Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, DK-2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1038/s41540-019-0104-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6685999PMC
August 2019

A generic deep convolutional neural network framework for prediction of receptor-ligand interactions-NetPhosPan: application to kinase phosphorylation prediction.

Bioinformatics 2019 04;35(7):1098-1107

Laboratorio de Bioinformatica, Instituto de Investigaciones Biotecnologicas, Universidad Nacional de San Martin, San Martin, B, HMP Buenos Aires, Argentina.

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http://dx.doi.org/10.1093/bioinformatics/bty715DOI Listing
April 2019

Retinoic Acid Signaling in Thymic Epithelial Cells Regulates Thymopoiesis.

J Immunol 2018 07 30;201(2):524-532. Epub 2018 May 30.

Immunology Section, Department of Experimental Medical Science, Lund University, 22184 Lund, Sweden;

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http://dx.doi.org/10.4049/jimmunol.1800418DOI Listing
July 2018

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios.

BMC Bioinformatics 2018 06 25;19(1):239. Epub 2018 Jun 25.

Center for Biological Sequence Analysis, Department of Bio and Health Informatics, Technical University of Denmark, DK-2800, Lyngby, Denmark.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2239-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6019707PMC
June 2018

How compelling are the data for Epstein-Barr virus being a trigger for systemic lupus and other autoimmune diseases?

Curr Opin Rheumatol 2016 Jul;28(4):398-404

aDepartment of Autoimmunology and Biomarkers, Statens Serum Institut, Copenhagen bDepartment of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://dx.doi.org/10.1097/BOR.0000000000000289DOI Listing
July 2016

wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases.

Hum Mutat 2016 Jan 20;37(1):36-42. Epub 2015 Oct 20.

Center for Biological Sequence Analysis (CBS), Systems Biology Department, Technical University of Denmark (DTU), Kongens Lyngby 2800, Denmark.

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http://dx.doi.org/10.1002/humu.22914DOI Listing
January 2016

Tumor mutation burden forecasts outcome in ovarian cancer with BRCA1 or BRCA2 mutations.

PLoS One 2013 12;8(11):e80023. Epub 2013 Nov 12.

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America ; Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0080023PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827141PMC
July 2014

Prediction of disease causing non-synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.

PLoS One 2013 25;8(7):e68370. Epub 2013 Jul 25.

Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0068370PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723835PMC
March 2014

wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases.

BMC Bioinformatics 2013 Nov 29;14:345. Epub 2013 Nov 29.

Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C/Melchor Fernandez Almagro, 3, E-28029 Madrid, Spain.

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http://dx.doi.org/10.1186/1471-2105-14-345DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879071PMC
November 2013

Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining.

Front Physiol 2012 22;3:323. Epub 2012 Aug 22.

Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre Madrid, Spain.

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http://journal.frontiersin.org/article/10.3389/fphys.2012.00
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http://dx.doi.org/10.3389/fphys.2012.00323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3449330PMC
October 2012

Prioritization of pathogenic mutations in the protein kinase superfamily.

BMC Genomics 2012 Jun 18;13 Suppl 4:S3. Epub 2012 Jun 18.

Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.

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http://dx.doi.org/10.1186/1471-2164-13-S4-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303724PMC
June 2012

Characterization of pathogenic germline mutations in human protein kinases.

BMC Bioinformatics 2011 5;12 Suppl 4:S1. Epub 2011 Jul 5.

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), C/Melchor Fernandez Almagro 3, E28029 Madrid, Spain.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/1471-2105-12-S4-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194193PMC
December 2011

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

Proteins 2009 ;77 Suppl 9:196-209

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), Madrid, Spain.

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http://dx.doi.org/10.1002/prot.22554DOI Listing
January 2010

Cancer-associated mutations are preferentially distributed in protein kinase functional sites.

Proteins 2009 Dec;77(4):892-903

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), C/Melchor Fernández Almagro 3, Madrid E28029, Spain.

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http://dx.doi.org/10.1002/prot.22512DOI Listing
December 2009

Extraction of human kinase mutations from literature, databases and genotyping studies.

BMC Bioinformatics 2009 Aug 27;10 Suppl 8:S1. Epub 2009 Aug 27.

Spanish National Cancer Research Centre, Madrid, Spain.

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http://dx.doi.org/10.1186/1471-2105-10-S8-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745582PMC
August 2009

From cancer genomes to cancer models: bridging the gaps.

EMBO Rep 2009 Apr 20;10(4):359-66. Epub 2009 Mar 20.

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre (CNIO), C/Melchor Fernández Almagro 3, E-28029 Madrid, Spain.

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http://dx.doi.org/10.1038/embor.2009.46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2672900PMC
April 2009

Prediction of protein interaction based on similarity of phylogenetic trees.

Methods Mol Biol 2008 ;484:523-35

Computational Systems Biology Group, National Centre for Biotechnology (CNB-CSIC), Madrid, Spain.

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http://dx.doi.org/10.1007/978-1-59745-398-1_31DOI Listing
February 2009

Assessment of intramolecular contact predictions for CASP7.

Proteins 2007 ;69 Suppl 8:152-8

Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, 3E-28029 Madrid, Spain.

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http://dx.doi.org/10.1002/prot.21637DOI Listing
January 2008

Enhancing the prediction of protein pairings between interacting families using orthology information.

BMC Bioinformatics 2008 Jan 23;9:35. Epub 2008 Jan 23.

Structural Bioinformatics Group, Spanish National Cancer Research Centre (CNIO), C/Melchor Fernández Almagro, 3. 28029, Madrid,Spain.

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http://dx.doi.org/10.1186/1471-2105-9-35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2263026PMC
January 2008

TSEMA: interactive prediction of protein pairings between interacting families.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W315-9

National Center for Biotechnology (CNB-CSIC) C/Darwin, 3 Cantoblanco, 28049 Madrid, Spain.

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http://dx.doi.org/10.1093/nar/gkl112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538787PMC
July 2006