Jordi Garcia-Fernàndez

Jordi Garcia-Fernàndez

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Jordi Garcia-Fernàndez

Jordi Garcia-Fernàndez

Publications by authors named "Jordi Garcia-Fernàndez"

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Characterization of the TLR Family in and Discovery of a Novel TLR22-Like Involved in dsRNA Recognition in Amphioxus.

Front Immunol 2018 2;9:2525. Epub 2018 Nov 2.

Department of Cell Biology, Animal Physiology and Immunology, Institute of Biotechnology and Biomedicine (IBB), Universitat Autònoma de Barcelona, Bellaterra, Spain.

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http://dx.doi.org/10.3389/fimmu.2018.02525DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224433PMC
October 2019

Microsyntenic Clusters Reveal Conservation of lncRNAs in Chordates Despite Absence of Sequence Conservation.

Biology (Basel) 2019 Aug 24;8(3). Epub 2019 Aug 24.

Department of Genetics, Microbiology and Statistics, Faculty of Biology, University of Barcelona, 08028 Barcelona, Spain.

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https://www.mdpi.com/2079-7737/8/3/61
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http://dx.doi.org/10.3390/biology8030061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6784235PMC
August 2019

Origin and evolution of the chordate central nervous system: insights from amphioxus genoarchitecture.

Int J Dev Biol 2017 ;61(10-11-12):655-664

Dept. Genetics, Microbiology and Statistics and Institute of Biomedicine (IBUB), Faculty of Biology, University of Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1387/ijdb.170258jgDOI Listing
January 2019

Evolutionary development of embryonic cerebrospinal fluid composition and regulation: an open research field with implications for brain development and function.

Fluids Barriers CNS 2016 Mar 15;13. Epub 2016 Mar 15.

Department of Genetics, Microbiology and Statistics, Unit of Biomedical, Evolutionary and Developmental Genetics, Faculty of Biological Sciences, University of Barcelona, Av. Diagonal 643, 08028, Barcelona, Catalonia, Spain.

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http://www.fluidsbarrierscns.com/content/13/1/5
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http://dx.doi.org/10.1186/s12987-016-0029-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4793645PMC
March 2016

Embryonic blood-cerebrospinal fluid barrier formation and function.

Front Neurosci 2014 28;8:343. Epub 2014 Oct 28.

Department of Genetics, Faculty of Biological Sciences, University of Barcelona Barcelona, Spain.

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http://dx.doi.org/10.3389/fnins.2014.00343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211391PMC
November 2014

The embryonic blood-cerebrospinal fluid barrier function before the formation of the fetal choroid plexus: role in cerebrospinal fluid formation and homeostasis.

Croat Med J 2014 Aug;55(4):306-16

David Bueno, Departament de Genética, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal 643, 08028 Barcelona, Catalonia (Spain),

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157384PMC
http://dx.doi.org/10.3325/cmj.2014.55.306DOI Listing
August 2014

CERKL knockdown causes retinal degeneration in zebrafish.

PLoS One 2013 9;8(5):e64048. Epub 2013 May 9.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0064048PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3650063PMC
December 2013

The evolutionary origins of chordate hematopoiesis and vertebrate endothelia.

Dev Biol 2013 Mar 27;375(2):182-92. Epub 2012 Nov 27.

Departament de Genètica and Institut de Biomedicina (IBUB), University of Barcelona, Av. Diagonal, 643, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1016/j.ydbio.2012.11.015DOI Listing
March 2013

Comparative genomics of the Hedgehog loci in chordates and the origins of Shh regulatory novelties.

Sci Rep 2012 31;2:433. Epub 2012 May 31.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1038/srep00433DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3364491PMC
February 2013

Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates.

Semin Cell Dev Biol 2013 Feb 3;24(2):83-94. Epub 2013 Jan 3.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal 645, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1016/j.semcdb.2012.12.008DOI Listing
February 2013

Broken colinearity of the amphioxus Hox cluster.

Evodevo 2012 Dec 3;3(1):28. Epub 2012 Dec 3.

Departament de Genètica and Institut de Biomedicina (IBUB), University of Barcelona, Av, Diagonal, 643, Barcelona, 08028, Spain.

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http://dx.doi.org/10.1186/2041-9139-3-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3534614PMC
December 2012

Amphioxus makes the cut-Again.

Commun Integr Biol 2012 Sep;5(5):499-502

Centre for Organismal Studies; University of Heidelberg; Heidelberg, Germany ; CNRS; UMR7232; Universite Pierre et Marie Curie Paris 06; Observatoire Oceanologique; Banyuls-sur-Mer; Paris, France ; Department de Genètica; Facultat de Biologia; Universitat de Barcelona; Barcelona, Spain.

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http://dx.doi.org/10.4161/cib.21075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3502216PMC
September 2012

The Eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2.

Nat Commun 2012 May 8;3:814. Epub 2012 May 8.

Developmental Neurobiology and Regeneration Lab, IRB Barcelona, Parc Cientific de Barcelona, Centro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas (CIBERNED, ISCIII), Department of Cell Biology, University of Barcelona, Barcelona E-08028, Spain.

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http://dx.doi.org/10.1038/ncomms1829DOI Listing
May 2012

Vertebrate-like regeneration in the invertebrate chordate amphioxus.

Proc Natl Acad Sci U S A 2012 Jan 27;109(2):517-22. Epub 2011 Dec 27.

Observatoire Océanologique de Banyuls-sur-Mer, Centre National de la Recherche Scientifique and Université Pierre et Marie Curie Paris VI, F-66650 Banyus-sur-Mer, France.

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http://dx.doi.org/10.1073/pnas.1100045109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3258630PMC
January 2012

Evolutionarily conserved A-to-I editing increases protein stability of the alternative splicing factor Nova1.

RNA Biol 2012 Jan 1;9(1):12-21. Epub 2012 Jan 1.

Departament de Genètica, Facultat de Biología, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.4161/rna.9.1.18387DOI Listing
January 2012

Transphyletic conservation of developmental regulatory state in animal evolution.

Proc Natl Acad Sci U S A 2011 Aug 15;108(34):14186-91. Epub 2011 Aug 15.

Centro Andaluz de Biología del Desarrollo, Consejo Superior de Investigaciones Cientificas - Universidad Pablo de Olavide, E-41013 Sevilla, Spain.

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http://dx.doi.org/10.1073/pnas.1109037108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161536PMC
August 2011

D-Aspartic acid is a novel endogenous neurotransmitter.

FASEB J 2011 Mar 16;25(3):1014-27. Epub 2010 Dec 16.

Departament de Genètica, Institut de Biomedicina, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1096/fj.10-168492DOI Listing
March 2011

Evolution of the nitric oxide synthase family in metazoans.

Mol Biol Evol 2011 Jan 16;28(1):163-79. Epub 2010 Jul 16.

Australian Institute of Marine Science, Townsville, Queensland, Australia.

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http://dx.doi.org/10.1093/molbev/msq179DOI Listing
January 2011

Internal and external paralogy in the evolution of tropomyosin genes in metazoans.

Mol Biol Evol 2010 Jul 10;27(7):1504-17. Epub 2010 Feb 10.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1093/molbev/msq018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912468PMC
July 2010

Complex selection on 5' splice sites in intron-rich organisms.

Genome Res 2009 Nov 10;19(11):2021-7. Epub 2009 Sep 10.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1101/gr.089276.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775602PMC
November 2009

Evolutionary genomics of the recently duplicated amphioxus Hairy genes.

Int J Biol Sci 2006 10;2(2):66-72. Epub 2006 Apr 10.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Avda. Diagonal 645, 08028 Barcelona, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1458425PMC
http://dx.doi.org/10.7150/ijbs.2.66DOI Listing
September 2009

FGFRL1 is a neglected putative actor of the FGF signalling pathway present in all major metazoan phyla.

BMC Evol Biol 2009 Sep 9;9:226. Epub 2009 Sep 9.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal 645, edifici annex, 1a planta, 08028 Barcelona, España.

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http://dx.doi.org/10.1186/1471-2148-9-226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754479PMC
September 2009

Implications of duplicated cis-regulatory elements in the evolution of metazoans: the DDI model or how simplicity begets novelty.

Brief Funct Genomic Proteomic 2009 Jul 3;8(4):266-75. Epub 2009 Aug 3.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal 645, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1093/bfgp/elp029DOI Listing
July 2009

Actors of the tyrosine kinase receptor downstream signaling pathways in amphioxus.

Evol Dev 2009 Jan-Feb;11(1):13-26

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal 645, edifici annex, planta, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1111/j.1525-142X.2008.00299.xDOI Listing
June 2009

It's a long way from amphioxus: descendants of the earliest chordate.

Bioessays 2009 Jun;31(6):665-75

Departament de Genètica and Institut de Biomedicina (IBUB), Universitat de Barcelona, Spain.

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http://dx.doi.org/10.1002/bies.200800110DOI Listing
June 2009

Characterization and putative role of a type I gonadotropin-releasing hormone in the cephalochordate amphioxus.

Endocrinology 2009 Feb 16;150(2):812-20. Epub 2008 Oct 16.

Dipartimento di Scienze della Vita, Seconda Università di Napoli, Caserta, Italy.

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http://dx.doi.org/10.1210/en.2008-1066DOI Listing
February 2009

Quantitative regulation of alternative splicing in evolution and development.

Bioessays 2009 Jan;31(1):40-50

Departament de Genètica, and Institut de Biomedicina (IBUB), Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1002/bies.080092DOI Listing
January 2009

Unexpectedly large number of conserved noncoding regions within the ancestral chordate Hox cluster.

Dev Genes Evol 2008 Dec 13;218(11-12):591-7. Epub 2008 Sep 13.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona 08028, Spain.

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http://dx.doi.org/10.1007/s00427-008-0246-8DOI Listing
December 2008

Gene expansion and retention leads to a diverse tyrosine kinase superfamily in amphioxus.

Mol Biol Evol 2008 Sep 11;25(9):1841-54. Epub 2008 Jun 11.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1093/molbev/msn132DOI Listing
September 2008

Convergent evolution of clustering of Iroquois homeobox genes across metazoans.

Mol Biol Evol 2008 Aug 9;25(8):1521-5. Epub 2008 May 9.

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http://dx.doi.org/10.1093/molbev/msn109DOI Listing
August 2008

Origin of introns by 'intronization' of exonic sequences.

Trends Genet 2008 Aug 1;24(8):378-81. Epub 2008 Jul 1.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona 08028, Spain.

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http://dx.doi.org/10.1016/j.tig.2008.05.007DOI Listing
August 2008

The amphioxus Hox cluster: characterization, comparative genomics, and evolution.

J Exp Zool B Mol Dev Evol 2008 Jul;310(5):465-77

Benaroya Research Institute at Virginia Mason, Seattle, Washington, USA.

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http://dx.doi.org/10.1002/jez.b.21213DOI Listing
July 2008

No more than 14: the end of the amphioxus Hox cluster.

Int J Biol Sci 2005 5;1(1):19-23. Epub 2005 Jan 5.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona. Av. Diagonal, 645. E-08028, Barcelona, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1140354PMC
http://dx.doi.org/10.7150/ijbs.1.19DOI Listing
February 2008

Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis.

Mol Biol Evol 2008 Feb 28;25(2):375-82. Epub 2007 Nov 28.

Departament de Genètica, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1093/molbev/msm262DOI Listing
February 2008

ParaHox genes in pancreatic cell cultures: effects on the insulin promoter regulation.

Int J Biol Sci 2008 Feb 6;4(1):48-57. Epub 2008 Feb 6.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238182PMC
http://dx.doi.org/10.7150/ijbs.4.48DOI Listing
February 2008

N-methyl-D-aspartic acid (NMDA) in the nervous system of the amphioxus Branchiostoma lanceolatum.

BMC Neurosci 2007 Dec 20;8:109. Epub 2007 Dec 20.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal 645, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1186/1471-2202-8-109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2241627PMC
December 2007

Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata.

Mol Biol Evol 2007 Aug 24;24(8):1604-7. Epub 2007 May 24.

Departament de Genètica, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1093/molbev/msm105DOI Listing
August 2007

Organizing chordates with an organizer.

Bioessays 2007 Jul;29(7):619-24

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Spain.

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http://dx.doi.org/10.1002/bies.20596DOI Listing
July 2007

Hox and ParaHox genes in Nemertodermatida, a basal bilaterian clade.

Int J Dev Biol 2006 ;50(8):675-9

Departament de Genetica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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http://dx.doi.org/10.1387/ijdb.062167ejDOI Listing
February 2007

Origin and evolution of the Trk family of neurotrophic receptors.

Mol Cell Neurosci 2006 Feb 25;31(2):179-92. Epub 2005 Oct 25.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal 645, Barcelona E-08028, Spain.

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http://dx.doi.org/10.1016/j.mcn.2005.09.007DOI Listing
February 2006

The genesis and evolution of homeobox gene clusters.

Nat Rev Genet 2005 Dec;6(12):881-92

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal 645, 08028 Barcelona, España.

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http://dx.doi.org/10.1038/nrg1723DOI Listing
December 2005

Outlining the nascent nervous system of Branchiostoma floridae (amphioxus) by the pan-neural marker AmphiElav.

Brain Res Bull 2005 Sep 2;66(4-6):518-21. Epub 2005 Apr 2.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Spain.

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http://dx.doi.org/10.1016/j.brainresbull.2005.03.007DOI Listing
September 2005

The single AmphiTrk receptor highlights increased complexity of neurotrophin signalling in vertebrates and suggests an early role in developing sensory neuroepidermal cells.

Development 2005 May 30;132(9):2191-202. Epub 2005 Mar 30.

Departament de Genética, Facultat de Biologia, Universitat de Barcelona, Avinguda Diagonal, 645, E-08028, Barcelona, Spain.

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http://dx.doi.org/10.1242/dev.01803DOI Listing
May 2005

Evo-Devo: the long and winding road.

Int J Dev Biol 2003 ;47(7-8):705-13

Department of Genetics, Faculty of Biology, University of Barcelona, Spain.

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August 2004

The amphioxus Hairy family: differential fate after duplication.

Development 2003 Dec 15;130(24):5903-14. Epub 2003 Oct 15.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Avenida Diagonal 645, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1242/dev.00811DOI Listing
December 2003

Genesis and evolution of the Evx and Mox genes and the extended Hox and ParaHox gene clusters.

Genome Biol 2003 23;4(2):R12. Epub 2003 Jan 23.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151302PMC
http://dx.doi.org/10.1186/gb-2003-4-2-r12DOI Listing
March 2003

The single amphioxus Mox gene: insights into the functional evolution of Mox genes, somites, and the asymmetry of amphioxus somitogenesis.

Dev Biol 2002 Jun;246(2):455-65

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal 645, E-08028 Barcelona, Spain.

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http://dx.doi.org/10.1006/dbio.2002.0660DOI Listing
June 2002

Gene duplications in the prototypical cephalochordate amphioxus.

Gene 2002 Apr;287(1-2):121-8

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona., Avenida Diagonal 645, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1016/s0378-1119(01)00828-9DOI Listing
April 2002