Jonathan Terhorst

Jonathan Terhorst

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Jonathan Terhorst

Jonathan Terhorst

Publications by authors named "Jonathan Terhorst"

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10Publications

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U-PASS: unified power analysis and forensics for qualitative traits in genetic association studies.

Bioinformatics 2019 Aug 10. Epub 2019 Aug 10.

Department of Statistics, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz637DOI Listing
August 2019

Inference of population history using coalescent HMMs: review and outlook.

Curr Opin Genet Dev 2018 12 26;53:70-76. Epub 2018 Jul 26.

Computer Science Division and Department of Statistics, University of California, Berkeley, United States; Chan Zuckerberg Biohub, San Francisco, United States. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2018.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296859PMC
December 2018

High-throughput inference of pairwise coalescence times identifies signals of selection and enriched disease heritability.

Nat Genet 2018 09 13;50(9):1311-1317. Epub 2018 Aug 13.

Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, USA.

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http://dx.doi.org/10.1038/s41588-018-0177-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6145075PMC
September 2018

Robust and scalable inference of population history from hundreds of unphased whole genomes.

Nat Genet 2017 Feb 26;49(2):303-309. Epub 2016 Dec 26.

Department of Statistics, University of California, Berkeley, Berkeley, California, USA.

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http://dx.doi.org/10.1038/ng.3748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5470542PMC
February 2017

Efficient computation of the joint sample frequency spectra for multiple populations.

J Comput Graph Stat 2017 16;26(1):182-194. Epub 2017 Feb 16.

Departments of EECS, Statistics, and Integrative Biology, University of California, Berkeley.

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http://dx.doi.org/10.1080/10618600.2016.1159212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5319604PMC
February 2017

Riches of phenotype computationally extracted from microbial colonies.

Proc Natl Acad Sci U S A 2016 May 2;113(20):E2822-31. Epub 2016 May 2.

Department of Molecular and Cell Biology and California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720;

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http://dx.doi.org/10.1073/pnas.1523295113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4878510PMC
May 2016

Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum.

Proc Natl Acad Sci U S A 2015 Jun 8;112(25):7677-82. Epub 2015 Jun 8.

Department of Statistics, University of California, Berkeley, CA 94720; Computer Science Division, University of California, Berkeley, CA 94720; Department of Integrative Biology, University of California, Berkeley, CA 94720

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http://dx.doi.org/10.1073/pnas.1503717112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4485089PMC
June 2015

Multi-locus analysis of genomic time series data from experimental evolution.

PLoS Genet 2015 Apr 7;11(4):e1005069. Epub 2015 Apr 7.

Department of Statistics, University of California, Berkeley, Berkeley, California, United States of America; Computer Science Division, University of California, Berkeley, Berkeley, California, United States of America; Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4388667PMC
April 2015

SMaSH: a benchmarking toolkit for human genome variant calling.

Bioinformatics 2014 Oct 3;30(19):2787-95. Epub 2014 Jun 3.

Department of Electrical Engineering and Computer Science, UC Berkeley, Berkeley, CA 94720, USA, The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA and Department of Statistics, UC Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu345DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4173010PMC
October 2014