Jonathan P Rast

Jonathan P Rast

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Jonathan P Rast

Jonathan P Rast

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Immune activity at the gut epithelium in the larval sea urchin.

Cell Tissue Res 2019 Sep 28;377(3):469-474. Epub 2019 Aug 28.

Emory University School of Medicine, Pathology & Laboratory Medicine, 1462 Clifton Road, Room 403E, Atlanta, GA, 30322, USA.

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http://dx.doi.org/10.1007/s00441-019-03095-7DOI Listing
September 2019

Analysis of immune response in the sea urchin larva.

Methods Cell Biol 2019 14;150:333-355. Epub 2018 Dec 14.

Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada; Emory University School of Medicine, Pathology and Laboratory Medicine, Atlanta, GA, United States. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S0091679X183014
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http://dx.doi.org/10.1016/bs.mcb.2018.10.009DOI Listing
June 2019

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria.

Curr Biol 2019 Jun 16;29(11):1818-1826.e6. Epub 2019 May 16.

Centre for Life's Origins and Evolution, Department of Genetics, Evolution and Environment, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK; Department of Computer Science, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2019.04.009DOI Listing
June 2019

AID/APOBEC-like cytidine deaminases are ancient innate immune mediators in invertebrates.

Nat Commun 2018 05 16;9(1):1948. Epub 2018 May 16.

Department of Biomedical Sciences, Chang Gung University, 259 Wenhua 1st Rd, Kwei-Shan District, Tao-Yuan, 333, Taiwan.

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http://dx.doi.org/10.1038/s41467-018-04273-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5956068PMC
May 2018

An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response.

Front Immunol 2017 23;8:1297. Epub 2017 Oct 23.

Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, United States.

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http://dx.doi.org/10.3389/fimmu.2017.01297DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5660111PMC
October 2017

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon Di Stefano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer Ty Anna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 08 23;8:16153. Epub 2017 Aug 23.

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http://dx.doi.org/10.1038/ncomms16153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5569240PMC
August 2017

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Authors:
Coen M Adema LaDeana W Hillier Catherine S Jones Eric S Loker Matty Knight Patrick Minx Guilherme Oliveira Nithya Raghavan Andrew Shedlock Laurence Rodrigues do Amaral Halime D Arican-Goktas Juliana G Assis Elio Hideo Baba Olga L Baron Christopher J Bayne Utibe Bickham-Wright Kyle K Biggar Michael Blouin Bryony C Bonning Chris Botka Joanna M Bridger Katherine M Buckley Sarah K Buddenborg Roberta Lima Caldeira Julia Carleton Omar S Carvalho Maria G Castillo Iain W Chalmers Mikkel Christensens Sandra Clifton Celine Cosseau Christine Coustau Richard M Cripps Yesid Cuesta-Astroz Scott F Cummins Leon di Stephano Nathalie Dinguirard David Duval Scott Emrich Cédric Feschotte Rene Feyereisen Peter FitzGerald Catrina Fronick Lucinda Fulton Richard Galinier Sandra G Gava Michael Geusz Kathrin K Geyer Gloria I Giraldo-Calderón Matheus de Souza Gomes Michelle A Gordy Benjamin Gourbal Christoph Grunau Patrick C Hanington Karl F Hoffmann Daniel Hughes Judith Humphries Daniel J Jackson Liana K Jannotti-Passos Wander de Jesus Jeremias Susan Jobling Bishoy Kamel Aurélie Kapusta Satwant Kaur Joris M Koene Andrea B Kohn Dan Lawson Scott P Lawton Di Liang Yanin Limpanont Sijun Liu Anne E Lockyer TyAnna L Lovato Fernanda Ludolf Vince Magrini Donald P McManus Monica Medina Milind Misra Guillaume Mitta Gerald M Mkoji Michael J Montague Cesar Montelongo Leonid L Moroz Monica C Munoz-Torres Umar Niazi Leslie R Noble Francislon S Oliveira Fabiano S Pais Anthony T Papenfuss Rob Peace Janeth J Pena Emmanuel A Pila Titouan Quelais Brian J Raney Jonathan P Rast David Rollinson Izinara C Rosse Bronwyn Rotgans Edwin J Routledge Kathryn M Ryan Larissa L S Scholte Kenneth B Storey Martin Swain Jacob A Tennessen Chad Tomlinson Damian L Trujillo Emanuela V Volpi Anthony J Walker Tianfang Wang Ittiprasert Wannaporn Wesley C Warren Xiao-Jun Wu Timothy P Yoshino Mohammed Yusuf Si-Ming Zhang Min Zhao Richard K Wilson

Nat Commun 2017 05 16;8:15451. Epub 2017 May 16.

The McDonnell Genome Institute, Washington University, Saint Louis, Missouri 63108 USA.

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http://dx.doi.org/10.1038/ncomms15451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5440852PMC
May 2017

A conserved alternative form of the purple sea urchin HEB/E2-2/E2A transcription factor mediates a switch in E-protein regulatory state in differentiating immune cells.

Dev Biol 2016 08 2;416(1):149-161. Epub 2016 Jun 2.

Biological Sciences, Sunnybrook Research Institute, Toronto, ON, Canada; Department of Immunology, University of Toronto, Toronto, ON, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2016.05.034DOI Listing
August 2016

Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes.

Dev Comp Immunol 2015 Mar 30;49(1):179-89. Epub 2014 Oct 30.

Department of Immunology and Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada; Sunnybrook Research Institute, Toronto, ON, Canada.

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http://dx.doi.org/10.1016/j.dci.2014.10.013DOI Listing
March 2015

Obituary: Zeev Pancer 1957–2014.

Authors:
Jonathan P Rast

Dev Comp Immunol 2014 Dec;47(2):327-8

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http://dx.doi.org/10.1016/j.dci.2014.08.009DOI Listing
December 2014

An ancient role for Gata-1/2/3 and Scl transcription factor homologs in the development of immunocytes.

Dev Biol 2013 Oct 20;382(1):280-92. Epub 2013 Jun 20.

Sunnybrook Research Institute and Department of Medical Biophysics, University of Toronto, 2075 Bayview Avenue, Room S-126B, Toronto, Ontario, Canada M4N 3M5.

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http://dx.doi.org/10.1016/j.ydbio.2013.06.019DOI Listing
October 2013

Lamprey immunity is far from primitive.

Proc Natl Acad Sci U S A 2013 Apr 3;110(15):5746-7. Epub 2013 Apr 3.

Sunnybrook Research Institute, Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada M4N 3M5.

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http://dx.doi.org/10.1073/pnas.1303541110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625256PMC
April 2013

Dynamic evolution of toll-like receptor multigene families in echinoderms.

Front Immunol 2012 5;3:136. Epub 2012 Jun 5.

Department of Immunology, Sunnybrook Research Institute, University of Toronto Toronto, ON, Canada.

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http://dx.doi.org/10.3389/fimmu.2012.00136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367398PMC
August 2012

Characterizing immune receptors from new genome sequences.

Methods Mol Biol 2011 ;748:273-98

Department of Immunology and Department of MedicalBiophysics, University of Toronto and Sunnybrook Research Institute, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1007/978-1-61779-139-0_19DOI Listing
October 2011

The origins of vertebrate adaptive immunity.

Nat Rev Immunol 2010 Aug;10(8):543-53

Department of Molecular Genetics, All Children's Hospital, St. Petersburg, Florida 33701, USA.

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http://dx.doi.org/10.1038/nri2807DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2919748PMC
August 2010

Sp185/333: a novel family of genes and proteins involved in the purple sea urchin immune response.

Dev Comp Immunol 2010 Mar 12;34(3):235-45. Epub 2009 Nov 12.

Department of Biological Sciences, George Washington University, Washington, DC, USA.

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http://dx.doi.org/10.1016/j.dci.2009.10.008DOI Listing
March 2010

Highly diversified innate receptor systems and new forms of animal immunity.

Semin Immunol 2010 Feb 22;22(1):39-47. Epub 2009 Dec 22.

Department of Medical Biophysics, University of Toronto, Sunnybrook Health Sciences Centre, 2075 Bayview Avenue, Rm. S126B, Toronto, ON M4N 3M5, Canada.

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http://dx.doi.org/10.1016/j.smim.2009.11.007DOI Listing
February 2010

Universal rules of immunity.

Immunol Cell Biol 2009 Oct 11;87(7):507-9. Epub 2009 Aug 11.

Department of Immunology, University of Toronto, Sunnybrook Health Sciences Centre, Ontario, Canada.

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http://dx.doi.org/10.1038/icb.2009.54DOI Listing
October 2009

Biological bulletin virtual symposium: genomics of large marine metazoans.

Biol Bull 2008 Jun;214(3):203-4

Beckman Institute, California Institute of Technology, 1200 E. California Blvd., Pasadena, California 91125, USA.

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http://dx.doi.org/10.1086/BBLv214n3p203DOI Listing
June 2008

Marine invertebrate genome sequences and our evolving understanding of animal immunity.

Biol Bull 2008 Jun;214(3):274-83

Department of Medical Biophysics, University of Toronto, Sunnybrook Health Sciences Centre, 2075 Bayview Avenue, Rm. S126B, Toronto, Ontario M4N 3M5, Canada.

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http://dx.doi.org/10.2307/25470669DOI Listing
June 2008

Alternative mechanisms of immune receptor diversity.

Curr Opin Immunol 2007 Oct 20;19(5):526-34. Epub 2007 Aug 20.

Department of Molecular Genetics, All Children's Hospital, 801 Sixth Street South, St. Petersburg, FL 33701, United States.

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http://dx.doi.org/10.1016/j.coi.2007.07.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2065753PMC
October 2007

The immune gene repertoire encoded in the purple sea urchin genome.

Dev Biol 2006 Dec 3;300(1):349-65. Epub 2006 Sep 3.

Sunnybrook Research Institute and Department of Medical Biophysics, University of Toronto, 2075 Bayview Ave., Room S-126b, Toronto, Ontario, Canada M4N 3M5.

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http://dx.doi.org/10.1016/j.ydbio.2006.08.065DOI Listing
December 2006

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

Genomic insights into the immune system of the sea urchin.

Science 2006 Nov;314(5801):952-6

Sunnybrook Research Institute and Department of Medical Biophysics, University of Toronto, 2075 Bayview Avenue, Room S-126B, Toronto, Ontario M4N 3M5, Canada.

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http://dx.doi.org/10.1126/science.1134301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3707132PMC
November 2006

An ancient evolutionary origin of the Rag1/2 gene locus.

Proc Natl Acad Sci U S A 2006 Mar 27;103(10):3728-33. Epub 2006 Feb 27.

Laboratory of Cellular and Molecular Biology, National Institute on Aging, Baltimore, MD 21224, USA.

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http://dx.doi.org/10.1073/pnas.0509720103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1450146PMC
March 2006

Unusual gene order and organization of the sea urchin hox cluster.

J Exp Zool B Mol Dev Evol 2006 Jan;306(1):45-58

Division of Biology and the Beckman Institute, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1002/jez.b.21070DOI Listing
January 2006

Echinoderms.

Curr Biol 2005 Dec;15(23):R944-6

Molecular Genetics Program, Benaroya Research Institute at Virginia Mason, 1201 Ninth Avenue, Seattle, WA 98101, USA.

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http://dx.doi.org/10.1016/j.cub.2005.11.026DOI Listing
December 2005

New insights into alternative mechanisms of immune receptor diversification.

Adv Immunol 2005 ;87:209-36

Department of Pediatrics, University of South Florida College of Medicine, USF/ACH Children's Research Institute, St. Petersburg, Florida 33701, USA.

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http://dx.doi.org/10.1016/S0065-2776(05)87006-3DOI Listing
September 2005

Genomic resources for the study of sea urchin development.

Methods Cell Biol 2004 ;74:733-57

Division of Biology and the Center for Computational Regulatory Genomics, Beckman Institute, California Institute of Technology, Pasadena, California 91125, USA.

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http://dx.doi.org/10.1016/s0091-679x(04)74030-3DOI Listing
February 2005

Mechanisms of antigen receptor evolution.

Semin Immunol 2004 Aug;16(4):215-26

Department of Pediatrics, Children's Research Institute, University of South Florida College of Medicine, 830 First Street South, St. Petersburg, FL 33701, USA.

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http://dx.doi.org/10.1016/j.smim.2004.08.001DOI Listing
August 2004

Expression patterns of four different regulatory genes that function during sea urchin development.

Gene Expr Patterns 2004 Jul;4(4):449-56

Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1016/j.modgep.2004.01.009DOI Listing
July 2004

Isolation of pigment cell specific genes in the sea urchin embryo by differential macroarray screening.

Development 2003 Oct;130(19):4587-96

Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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http://dx.doi.org/10.1242/dev.00647DOI Listing
October 2003

Development gene networks and evolution.

Authors:
Jonathan P Rast

J Struct Funct Genomics 2003 ;3(1-4):225-34

Division of Biology 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

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July 2003

Lineage-restricted retention of a primitive immunoglobulin heavy chain isotype within the Dipnoi reveals an evolutionary paradox.

Proc Natl Acad Sci U S A 2003 Mar 26;100(5):2501-6. Epub 2003 Feb 26.

Department of Biosystems Science, The Graduate University for Advanced Studies (Sokendai), Hayama, Kanagawa 240-0193, Japan.

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http://dx.doi.org/10.1073/pnas.0538029100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151370PMC
March 2003

New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization.

Dev Biol 2002 Jun;246(1):132-47

Division of Biology 156-29, California Institute of Technology, Pasadena 91125, USA.

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http://dx.doi.org/10.1006/dbio.2002.0607DOI Listing
June 2002

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening.

Dev Biol 2002 Jun;246(1):191-208

Division of Biology 156-29, California Institute of Technology, Pasadena 91125, USA.

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http://dx.doi.org/10.1006/dbio.2002.0654DOI Listing
June 2002