Jonathan F Wendel

Jonathan F Wendel

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Jonathan F Wendel

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Genome Sequence Assemblies of and .

G3 (Bethesda) 2019 Oct 7;9(10):3079-3085. Epub 2019 Oct 7.

Ecology, Evolution, and Organismal Biology Dept., Iowa State University, Ames, IA 50010.

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http://dx.doi.org/10.1534/g3.119.400392DOI Listing
October 2019

The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis.

Nat Commun 2019 Oct 16;10(1):4702. Epub 2019 Oct 16.

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, 430070, China.

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http://dx.doi.org/10.1038/s41467-019-12607-6DOI Listing
October 2019

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids.

New Phytol 2019 Jul 30;223(2):979-992. Epub 2019 Apr 30.

Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, 130024, China.

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http://dx.doi.org/10.1111/nph.15820DOI Listing
July 2019

Cis-trans controls and regulatory novelty accompanying allopolyploidization.

New Phytol 2019 03 10;221(4):1691-1700. Epub 2018 Nov 10.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.

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http://doi.wiley.com/10.1111/nph.15515
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http://dx.doi.org/10.1111/nph.15515DOI Listing
March 2019

Cytonuclear Coevolution following Homoploid Hybrid Speciation in Aegilops tauschii.

Mol Biol Evol 2019 02;36(2):341-349

Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, China.

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http://dx.doi.org/10.1093/molbev/msy215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6367959PMC
February 2019

Gene Expression Dominance in Allopolyploids: Hypotheses and Models.

Trends Plant Sci 2018 05 9;23(5):393-402. Epub 2018 Feb 9.

Université Paris Diderot-Paris VII, 75205 Paris Cedex 13, France; Institut Jacques Monod, Université Paris Diderot, CNRS UMR7592, Paris 75013, France. Electronic address:

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http://dx.doi.org/10.1016/j.tplants.2018.01.002DOI Listing
May 2018

Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation.

New Phytol 2018 05 21;218(3):1061-1075. Epub 2018 Feb 21.

National Key Laboratory of Plant Molecular Genetics, National Center for Plant Gene Research, Institute of Plant Physiology and Ecology/CAS Center for Excellence in Molecular Plant Sciences, University of CAS, Chinese Academy of Sciences, Shanghai, 200032, China.

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http://dx.doi.org/10.1111/nph.15063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6079642PMC
May 2018

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation.

Curr Opin Genet Dev 2018 04 10;49:1-7. Epub 2018 Feb 10.

Department of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany.

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http://dx.doi.org/10.1016/j.gde.2018.01.004DOI Listing
April 2018

Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice.

Mol Ecol 2017 Oct 16;26(20):5451-5466. Epub 2017 Sep 16.

Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, China.

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http://doi.wiley.com/10.1111/mec.14297
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http://dx.doi.org/10.1111/mec.14297DOI Listing
October 2017

Cytonuclear responses to genome doubling.

Am J Bot 2017 09;104(9):1277-1280

Department of Biology, 440 Biology Building, Colorado State University, Fort Collins, Colorado 80523 USA.

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http://dx.doi.org/10.3732/ajb.1700293DOI Listing
September 2017

Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species.

PLoS One 2016 16;11(6):e0157183. Epub 2016 Jun 16.

Department of Plant Genetics and Breeding/Key Laboratory of Crop Heterosis and Utilization of Ministry of Education/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0157183PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911064PMC
July 2017

Molecular evolution of the plastid genome during diversification of the cotton genus.

Mol Phylogenet Evol 2017 07 13;112:268-276. Epub 2017 Apr 13.

Laboratory of Cotton Genetics, Genomics and Breeding, College of Agronomy and Biotechnology/Key Laboratory of Crop Heterosis and Utilization of Ministry of Education/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing 100193, China. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2017.04.014DOI Listing
July 2017

Gene-body CG methylation and divergent expression of duplicate genes in rice.

Sci Rep 2017 06 1;7(1):2675. Epub 2017 Jun 1.

Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, 130024, P. R. China.

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http://dx.doi.org/10.1038/s41598-017-02860-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5453933PMC
June 2017

Rapid proliferation and nucleolar organizer targeting centromeric retrotransposons in cotton.

Plant J 2016 12 1;88(6):992-1005. Epub 2016 Nov 1.

Center for Genomics and Biotechnology, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China.

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http://dx.doi.org/10.1111/tpj.13309DOI Listing
December 2016

Independent Domestication of Two Old World Cotton Species.

Genome Biol Evol 2016 07 2;8(6):1940-7. Epub 2016 Jul 2.

Department of Ecology, Evolution and Organismal Biology, Iowa State University

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http://dx.doi.org/10.1093/gbe/evw129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943200PMC
July 2016

Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis.

Mol Ecol 2016 Jun 11;25(11):2644-60. Epub 2016 May 11.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.

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http://dx.doi.org/10.1111/mec.13626DOI Listing
June 2016

Evolution of plant genome architecture.

Genome Biol 2016 Mar 1;17:37. Epub 2016 Mar 1.

Arizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, Tucson, AZ, 85750, USA.

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http://dx.doi.org/10.1186/s13059-016-0908-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772531PMC
March 2016

Re-evaluating the phylogeny of allopolyploid Gossypium L.

Mol Phylogenet Evol 2015 Nov 4;92:45-52. Epub 2015 Jun 4.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, United States.

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https://linkinghub.elsevier.com/retrieve/pii/S10557903150016
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http://dx.doi.org/10.1016/j.ympev.2015.05.023DOI Listing
November 2015

The wondrous cycles of polyploidy in plants.

Am J Bot 2015 Nov 8;102(11):1753-6. Epub 2015 Oct 8.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011

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http://dx.doi.org/10.3732/ajb.1500320DOI Listing
November 2015

A re-evaluation of the homoploid hybrid origin of Aegilops tauschii, the donor of the wheat D-subgenome.

New Phytol 2015 Oct 21;208(1):4-8. Epub 2015 Jan 21.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.

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http://dx.doi.org/10.1111/nph.13294DOI Listing
October 2015

Multiple rounds of ancient and recent hybridizations have occurred within the Aegilops-Triticum complex.

New Phytol 2015 Oct 6;208(1):11-2. Epub 2015 Jul 6.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.

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http://doi.wiley.com/10.1111/nph.13563
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http://dx.doi.org/10.1111/nph.13563DOI Listing
October 2015

Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes.

BMC Genomics 2015 Oct 12;16:770. Epub 2015 Oct 12.

Department of Plant Genetics and Breeding /Key Laboratory of Crop Heterosis and Utilization of Ministry of Education /Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China.

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http://www.biomedcentral.com/1471-2164/16/770
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http://dx.doi.org/10.1186/s12864-015-1988-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603758PMC
October 2015

Gene-expression novelty in allopolyploid cotton: a proteomic perspective.

Genetics 2015 May 2;200(1):91-104. Epub 2015 Mar 2.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011

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http://dx.doi.org/10.1534/genetics.115.174367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423384PMC
May 2015

Unraveling the fabric of polyploidy.

Nat Biotechnol 2015 May;33(5):491-3

Iowa State University, Ames, Iowa, USA.

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http://dx.doi.org/10.1038/nbt.3217DOI Listing
May 2015

Persistence of subgenomes in paleopolyploid cotton after 60 my of evolution.

Mol Biol Evol 2015 Apr 7;32(4):1063-71. Epub 2015 Jan 7.

Department of Ecology, Evolution and Organismal Biology, Iowa State University

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http://dx.doi.org/10.1093/molbev/msv001DOI Listing
April 2015

Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.).

Planta 2014 Dec 26;240(6):1237-51. Epub 2014 Aug 26.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.

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http://dx.doi.org/10.1007/s00425-014-2146-7DOI Listing
December 2014

Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3.

Nat Commun 2014 Nov 21;5:5519. Epub 2014 Nov 21.

1] National Key Laboratory of Plant Molecular Genetics, National Plant Gene Research Center, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China [2] Plant Science Research Center, Shanghai Chenshan Botanical Garden, Shanghai 201602, China.

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http://dx.doi.org/10.1038/ncomms6519DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263147PMC
November 2014

Cytonuclear evolution of rubisco in four allopolyploid lineages.

Mol Biol Evol 2014 Oct 10;31(10):2624-36. Epub 2014 Jul 10.

Department of Ecology, Evolution and Organismal Biology, Iowa State University

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http://dx.doi.org/10.1093/molbev/msu207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166922PMC
October 2014

Doubling down on genomes: polyploidy and crop plants.

Am J Bot 2014 Oct 3;101(10):1711-25. Epub 2014 Aug 3.

Ecology, Evolution and Organismal Biology, Iowa State University, Ames, Iowa 50011 USA.

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http://dx.doi.org/10.3732/ajb.1400119DOI Listing
October 2014

The legacy of diploid progenitors in allopolyploid gene expression patterns.

Philos Trans R Soc Lond B Biol Sci 2014 Aug;369(1648)

Department of Biology, Reed College, Portland, OR 97202, USA.

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http://dx.doi.org/10.1098/rstb.2013.0354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071527PMC
August 2014

Evolution of the BBAA component of bread wheat during its history at the allohexaploid level.

Plant Cell 2014 Jul 2;26(7):2761-76. Epub 2014 Jul 2.

Key Laboratory of Molecular Epigenetics of the Ministry of Education, Northeast Normal University, Changchun 130024, China

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http://dx.doi.org/10.1105/tpc.114.128439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4145112PMC
July 2014

Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies.

Mol Biol Evol 2014 May 27;31(5):1066-76. Epub 2014 Feb 27.

Key Laboratory of Molecular Epigenetics of the Ministry of Education (MOE), Northeast Normal University, Changchun, China.

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http://dx.doi.org/10.1093/molbev/msu085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3995341PMC
May 2014

Drivers and dynamics of diversity in plant genomes.

New Phytol 2014 Apr;202(1):15-8

Université de Perpignan, UMR 5096 CNRS - IRD - UPVD, Perpignan, France.

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http://dx.doi.org/10.1111/nph.12633DOI Listing
April 2014

Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome.

PLoS Genet 2014 Jan 2;10(1):e1004073. Epub 2014 Jan 2.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3879233PMC
January 2014

Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense.

New Phytol 2013 Oct 25;200(2):570-82. Epub 2013 Jun 25.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, 50011, USA.

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http://dx.doi.org/10.1111/nph.12381DOI Listing
October 2013

Crop plants as models for understanding plant adaptation and diversification.

Front Plant Sci 2013 1;4:290. Epub 2013 Aug 1.

Biology Department, Washington University St. Louis, MO, USA.

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http://dx.doi.org/10.3389/fpls.2013.00290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729982PMC
August 2013

A bountiful harvest: genomic insights into crop domestication phenotypes.

Annu Rev Plant Biol 2013 28;64:47-70. Epub 2013 Feb 28.

Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

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http://dx.doi.org/10.1146/annurev-arplant-050312-120048DOI Listing
July 2013

The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco.

Mol Biol Evol 2012 Oct 3;29(10):3023-36. Epub 2012 Apr 3.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, IA, USA.

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http://www.eeob.iastate.edu/faculty/WendelJ/pdfs/Gongetal201
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http://mbe.oxfordjournals.org/cgi/doi/10.1093/molbev/mss110
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http://dx.doi.org/10.1093/molbev/mss110DOI Listing
October 2012

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.

BMC Genomics 2012 Jul 6;13:302. Epub 2012 Jul 6.

Department of Biology, Duke University, Durham, NC 27708, USA.

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http://dx.doi.org/10.1186/1471-2164-13-302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427041PMC
July 2012

Targeted sequence capture as a powerful tool for evolutionary analysis.

Am J Bot 2012 Feb 19;99(2):312-9. Epub 2012 Jan 19.

Department of Ecology, Evolution, & Organismal Biology, Iowa State University, Ames, Iowa 50011, USA.

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http://dx.doi.org/10.3732/ajb.1100323DOI Listing
February 2012

Genomically biased accumulation of seed storage proteins in allopolyploid cotton.

Genetics 2011 Nov 6;189(3):1103-15. Epub 2011 Sep 6.

Department of Ecology, Iowa State University, Ames, Iowa 50011, USA.

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http://dx.doi.org/10.1534/genetics.111.132407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3213360PMC
November 2011

The hairy problem of epigenetics in evolution.

New Phytol 2011 Jul;191(1):7-9

Department of Integrative Biology, University of South Florida, Tampa, FL 33620, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2011.03761.xDOI Listing
July 2011

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication.

BMC Biol 2010 Nov 15;8:139. Epub 2010 Nov 15.

Department of Ecology, 251 Bessey Hall, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1186/1741-7007-8-139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2992495PMC
November 2010

The history and disposition of transposable elements in polyploid Gossypium.

Genome 2010 Aug;53(8):599-607

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1139/g10-038DOI Listing
August 2010

Multiple patterns of rDNA evolution following polyploidy in Oryza.

Mol Phylogenet Evol 2010 Apr 24;55(1):136-42. Epub 2009 Oct 24.

College of Life Science, Qufu Normal University, Qufu, Shandong 273165, PR China.

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http://dx.doi.org/10.1016/j.ympev.2009.10.023DOI Listing
April 2010

Homoeologous nonreciprocal recombination in polyploid cotton.

New Phytol 2010 Apr 19;186(1):123-34. Epub 2009 Nov 19.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2009.03093.xDOI Listing
April 2010

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

New Phytol 2010 Apr 19;186(1):184-93. Epub 2009 Nov 19.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2009.03107.xDOI Listing
April 2010

Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber.

J Integr Plant Biol 2010 Feb;52(2):205-20

Department of Plant Biology, North Carolina State University, Raleigh, NC 27695-7612, USA.

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http://dx.doi.org/10.1111/j.1744-7909.2010.00934.xDOI Listing
February 2010

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants.

Proc Natl Acad Sci U S A 2009 Oct 7;106(42):17811-6. Epub 2009 Oct 7.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1073/pnas.0904339106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2764891PMC
October 2009

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton.

J Hered 2009 Jul-Aug;100(4):487-90. Epub 2009 Mar 5.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1093/jhered/esp003DOI Listing
September 2009

Gene duplication and evolutionary novelty in plants.

New Phytol 2009 Aug 23;183(3):557-64. Epub 2009 Jun 23.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2009.02923.xDOI Listing
August 2009

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium).

Genetics 2009 Jun 10;182(2):503-17. Epub 2009 Apr 10.

Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84602, USA.

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http://dx.doi.org/10.1534/genetics.109.102608DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2691759PMC
June 2009

Genomic expression dominance in allopolyploids.

BMC Biol 2009 May 1;7:18. Epub 2009 May 1.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, Iowa 50010, USA.

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http://dx.doi.org/10.1186/1741-7007-7-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2684529PMC
May 2009

Evolutionary genetics of genome merger and doubling in plants.

Annu Rev Genet 2008 ;42:443-61

Department of Plant Biology, Cornell University, Ithaca, New York 14850, USA.

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http://dx.doi.org/10.1146/annurev.genet.42.110807.091524DOI Listing
February 2009

Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense.

Evol Dev 2008 Sep-Oct;10(5):567-82

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1525-142X.2008.00272.xDOI Listing
November 2008

A phylogenetic analysis of indel dynamics in the cotton genus.

Mol Biol Evol 2008 Jul 9;25(7):1415-28. Epub 2008 Apr 9.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Iowa, USA.

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http://dx.doi.org/10.1093/molbev/msn085DOI Listing
July 2008

Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton.

Genetics 2008 Jul 18;179(3):1725-33. Epub 2008 Jun 18.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011, USA.

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http://dx.doi.org/10.1534/genetics.108.089656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2475765PMC
July 2008

Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea.

Am J Bot 2008 Jun;95(6):756-65

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011 USA.

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http://dx.doi.org/10.3732/ajb.0800049DOI Listing
June 2008

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant.

Proc Natl Acad Sci U S A 2008 Apr 17;105(16):6191-5. Epub 2008 Apr 17.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1073/pnas.0711569105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2329682PMC
April 2008

The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism.

PLoS Genet 2008 Feb;4(2):e25

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, Iowa, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.0040025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2222923PMC
February 2008

A majority of cotton genes are expressed in single-celled fiber.

Planta 2008 Jan 12;227(2):319-29. Epub 2007 Sep 12.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1007/s00425-007-0619-7DOI Listing
January 2008

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium.

Genome 2008 Jan;51(1):11-8

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1139/g07-099DOI Listing
January 2008

Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L.

Planta Med 2007 Dec 11;73(15):1614-21. Epub 2007 Dec 11.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA, USA.

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http://dx.doi.org/10.1055/s-2007-993749DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2266819PMC
December 2007

Tobacco genomes quickly go up in smoke.

New Phytol 2007 ;175(4):599-602

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2007.02197.xDOI Listing
November 2007

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

Plant J 2007 Jun 25;50(6):995-1006. Epub 2007 Apr 25.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2007.03102.xDOI Listing
June 2007

Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.).

J Hered 2006 Sep-Oct;97(5):444-50. Epub 2006 Sep 20.

Department of Biology, Duke University, Durham, NC 27710, USA.

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http://academic.oup.com/jhered/article/97/5/444/2188028/Infr
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http://dx.doi.org/10.1093/jhered/esl023DOI Listing
January 2007

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium.

Genome Res 2006 Oct 5;16(10):1252-61. Epub 2006 Sep 5.

Iowa State University, Department of Ecology, Evolution and Organismal Biology, Ames, Iowa 50011, USA.

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http://dx.doi.org/10.1101/gr.5282906DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1581434PMC
October 2006

PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS.

Econ Bot 2006 Sep;60(3):205-211

Immunobiology Program, Department of Health and Human Performance, Iowa State University, Ames, Iowa 50011-1160.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2254517PMC
September 2006

A novel approach for characterizing expression levels of genes duplicated by polyploidy.

Genetics 2006 Jul 15;173(3):1823-7. Epub 2006 May 15.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Iowa 50011, USA.

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http://dx.doi.org/10.1534/genetics.106.058271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1526680PMC
July 2006

Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives.

Evolution 2006 Mar;60(3):505-17

Real Jardín Botánico de Madrid, Consejo Superior de Investigaciones Científicas, Madrid, Spain.

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March 2006

Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids.

Genetics 2005 Dec 2;171(4):2139-42. Epub 2005 Sep 2.

UBC Botanical Garden, Centre for Plant Research and Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.

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http://dx.doi.org/10.1534/genetics.105.047357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456131PMC
December 2005

Novel patterns of gene expression in polyploid plants.

Trends Genet 2005 Oct;21(10):539-43

UBC Botanical Garden and Centre for Plant Research, 2357 Main Mall, MacMillan Building, University of British Columbia, Vancouver, British Colombia, Canada, V6T 1Z4.

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http://dx.doi.org/10.1016/j.tig.2005.07.009DOI Listing
October 2005

Epigenetics and plant evolution.

New Phytol 2005 Oct;168(1):81-91

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, Iowa 50011, USA.

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http://dx.doi.org/10.1111/j.1469-8137.2005.01491.xDOI Listing
October 2005

Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum.

Theor Appl Genet 2005 Aug 26;111(4):665-76. Epub 2005 Jul 26.

Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1007/s00122-005-2032-6DOI Listing
August 2005

Polyploidy and genome evolution in plants.

Curr Opin Plant Biol 2005 Apr;8(2):135-41

UBC Botanical Garden and Centre for Plant Research, MacMillan Building, 2357 Main Mall, University of British Columbia, Vancouver, British Columbia, V6T 1Z4, Canada.

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http://dx.doi.org/10.1016/j.pbi.2005.01.001DOI Listing
April 2005

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae).

Mol Ecol 2005 Apr;14(4):1163-75

UMR 118 INRA-Agrocampus Rennes, Amélioration des Plantes et Biotechnologies Végétales, Station de Génétique et Amélioration des Plantes, F-35653 Le Rheu, France.

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http://dx.doi.org/10.1111/j.1365-294X.2005.02488.xDOI Listing
April 2005

Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid.

Genetics 2004 Dec 15;168(4):2217-26. Epub 2004 Sep 15.

Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, Iowa 50011, USA.

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http://www.genetics.org/lookup/doi/10.1534/genetics.104.0335
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http://dx.doi.org/10.1534/genetics.104.033522DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448729PMC
December 2004

Incongruent patterns of local and global genome size evolution in cotton.

Genome Res 2004 Aug 15;14(8):1474-82. Epub 2004 Jul 15.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa 50011, USA.

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http://dx.doi.org/10.1101/gr.2673204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC509256PMC
August 2004

Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae).

Am J Bot 2004 Jun;91(6):871-80

Center for Population Biology and Section of Evolution and Ecology, University of California, Davis, California 95616 USA;

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http://dx.doi.org/10.3732/ajb.91.6.871DOI Listing
June 2004