Jonathan D Walton

Jonathan D Walton

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Jonathan D Walton

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Genetic loci simultaneously controlling lignin monomers and biomass digestibility of rice straw.

Sci Rep 2018 Feb 26;8(1):3636. Epub 2018 Feb 26.

Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China.

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http://dx.doi.org/10.1038/s41598-018-21741-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827516PMC
February 2018

Versatility of Prolyl Oligopeptidase B in Peptide Macrocyclization.

ACS Synth Biol 2018 01 12;7(1):145-152. Epub 2017 Oct 12.

Department of Biochemistry and Molecular Biology, ‡Department of Energy-Plant Research Laboratory, and §Department of Plant Biology, Michigan State University , East Lansing, Michigan 48824, United States.

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http://dx.doi.org/10.1021/acssynbio.7b00264DOI Listing
January 2018

Abundance of Secreted Proteins of Is Regulated by Light of Different Intensities.

Front Microbiol 2017 22;8:2586. Epub 2017 Dec 22.

Center for Health and Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria.

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http://dx.doi.org/10.3389/fmicb.2017.02586DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5770571PMC
December 2017

Functional diversity for biomass deconstruction in family 5 subfamily 5 (GH5_5) of fungal endo-β1,4-glucanases.

Appl Microbiol Biotechnol 2017 May 14;101(10):4093-4101. Epub 2017 Feb 14.

Department of Energy Plant Research Laboratory, Department of Plant Biology, and DOE Great Lakes Bioenergy Research Center, Michigan State University, E. Lansing, MI, 48824, USA.

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http://dx.doi.org/10.1007/s00253-017-8168-xDOI Listing
May 2017

Expansion and diversification of the MSDIN family of cyclic peptide genes in the poisonous agarics Amanita phalloides and A. bisporigera.

BMC Genomics 2016 Dec 15;17(1):1038. Epub 2016 Dec 15.

Department of Plant Biology, Michigan State University, East Lansing, MI, 48824, USA.

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http://dx.doi.org/10.1186/s12864-016-3378-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5159998PMC
December 2016

Enhancement of synthetic Trichoderma-based enzyme mixtures for biomass conversion with an alternative family 5 glycosyl hydrolase from Sporotrichum thermophile.

PLoS One 2014 8;9(10):e109885. Epub 2014 Oct 8.

Department of Energy Great Lakes Bioenergy Research Center and Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109885PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4190410PMC
October 2015

Chitinases Are Essential for Cell Separation in Ustilago maydis.

Eukaryot Cell 2015 Sep 1;14(9):846-57. Epub 2015 May 1.

Heinrich-Heine University Düsseldorf, Institute for Microbiology, Düsseldorf, Germany Cluster of Excellence in Plant Sciences, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany

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http://ec.asm.org/content/14/9/846.full.pdf
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http://ec.asm.org/lookup/doi/10.1128/EC.00022-15
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http://dx.doi.org/10.1128/EC.00022-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551588PMC
September 2015

Production of (15)N-labeled α-amanitin in Galerina marginata.

Toxicon 2015 Sep 19;103:60-4. Epub 2015 Jun 19.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA. Electronic address:

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http://dx.doi.org/10.1016/j.toxicon.2015.06.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526342PMC
September 2015

Minimum Information about a Biosynthetic Gene cluster.

Authors:
Marnix H Medema Renzo Kottmann Pelin Yilmaz Matthew Cummings John B Biggins Kai Blin Irene de Bruijn Yit Heng Chooi Jan Claesen R Cameron Coates Pablo Cruz-Morales Srikanth Duddela Stephanie Düsterhus Daniel J Edwards David P Fewer Neha Garg Christoph Geiger Juan Pablo Gomez-Escribano Anja Greule Michalis Hadjithomas Anthony S Haines Eric J N Helfrich Matthew L Hillwig Keishi Ishida Adam C Jones Carla S Jones Katrin Jungmann Carsten Kegler Hyun Uk Kim Peter Kötter Daniel Krug Joleen Masschelein Alexey V Melnik Simone M Mantovani Emily A Monroe Marcus Moore Nathan Moss Hans-Wilhelm Nützmann Guohui Pan Amrita Pati Daniel Petras F Jerry Reen Federico Rosconi Zhe Rui Zhenhua Tian Nicholas J Tobias Yuta Tsunematsu Philipp Wiemann Elizabeth Wyckoff Xiaohui Yan Grace Yim Fengan Yu Yunchang Xie Bertrand Aigle Alexander K Apel Carl J Balibar Emily P Balskus Francisco Barona-Gómez Andreas Bechthold Helge B Bode Rainer Borriss Sean F Brady Axel A Brakhage Patrick Caffrey Yi-Qiang Cheng Jon Clardy Russell J Cox René De Mot Stefano Donadio Mohamed S Donia Wilfred A van der Donk Pieter C Dorrestein Sean Doyle Arnold J M Driessen Monika Ehling-Schulz Karl-Dieter Entian Michael A Fischbach Lena Gerwick William H Gerwick Harald Gross Bertolt Gust Christian Hertweck Monica Höfte Susan E Jensen Jianhua Ju Leonard Katz Leonard Kaysser Jonathan L Klassen Nancy P Keller Jan Kormanec Oscar P Kuipers Tomohisa Kuzuyama Nikos C Kyrpides Hyung-Jin Kwon Sylvie Lautru Rob Lavigne Chia Y Lee Bai Linquan Xinyu Liu Wen Liu Andriy Luzhetskyy Taifo Mahmud Yvonne Mast Carmen Méndez Mikko Metsä-Ketelä Jason Micklefield Douglas A Mitchell Bradley S Moore Leonilde M Moreira Rolf Müller Brett A Neilan Markus Nett Jens Nielsen Fergal O'Gara Hideaki Oikawa Anne Osbourn Marcia S Osburne Bohdan Ostash Shelley M Payne Jean-Luc Pernodet Miroslav Petricek Jörn Piel Olivier Ploux Jos M Raaijmakers José A Salas Esther K Schmitt Barry Scott Ryan F Seipke Ben Shen David H Sherman Kaarina Sivonen Michael J Smanski Margherita Sosio Evi Stegmann Roderich D Süssmuth Kapil Tahlan Christopher M Thomas Yi Tang Andrew W Truman Muriel Viaud Jonathan D Walton Christopher T Walsh Tilmann Weber Gilles P van Wezel Barrie Wilkinson Joanne M Willey Wolfgang Wohlleben Gerard D Wright Nadine Ziemert Changsheng Zhang Sergey B Zotchev Rainer Breitling Eriko Takano Frank Oliver Glöckner

Nat Chem Biol 2015 Sep;11(9):625-31

1] Microbial Genomics and Bioinformatics Research Group, Max Planck Institute for Marine Microbiology, Bremen, Germany. [2] Jacobs University Bremen gGmbH, Bremen, Germany.

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http://orbit.dtu.dk/files/115504295/Minimum_Information_abou
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http://www.nature.com/doifinder/10.1038/nchembio.1890
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http://dx.doi.org/10.1038/nchembio.1890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714517PMC
September 2015

Peptide macrocyclization catalyzed by a prolyl oligopeptidase involved in α-amanitin biosynthesis.

Chem Biol 2014 Dec 4;21(12):1610-7. Epub 2014 Dec 4.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2014.10.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272623PMC
December 2014

Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum.

J Biol Chem 2014 Sep 1;289(37):25624-38. Epub 2014 Aug 1.

From Rice University, Houston Texas 77005, Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin 53706,

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http://dx.doi.org/10.1074/jbc.M114.583286DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162167PMC
September 2014

Profiling of amatoxins and phallotoxins in the genus Lepiota by liquid chromatography combined with UV absorbance and mass spectrometry.

Toxins (Basel) 2014 Aug 5;6(8):2336-47. Epub 2014 Aug 5.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.3390/toxins6082336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147585PMC
August 2014

Factors contributing to the recalcitrance of herbaceous dicotyledons (forbs) to enzymatic deconstruction.

Biotechnol Biofuels 2014 Apr 5;7(1):52. Epub 2014 Apr 5.

Department of Energy, Great Lakes Bioenergy Research Center, 1129 Farm Lane, Michigan State University, East Lansing, MI 48824, USA.

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http://biotechnologyforbiofuels.biomedcentral.com/articles/1
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http://dx.doi.org/10.1186/1754-6834-7-52DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3992138PMC
April 2014

Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application).

BMC Bioinformatics 2013 Nov 20;14:335. Epub 2013 Nov 20.

Department of Plant Pathology, University of Minnesota, St, Paul, Minnesota 55108, USA.

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http://dx.doi.org/10.1186/1471-2105-14-335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3924332PMC
November 2013

Conservation of the genes for HC-toxin biosynthesis in Alternaria jesenskae.

BMC Microbiol 2013 Jul 17;13:165. Epub 2013 Jul 17.

Department of Energy Plant Research Laboratory, Michigan State University, 612 Wilson Road, Room 210, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1186/1471-2180-13-165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3729494PMC
July 2013

α-Fucosidases with different substrate specificities from two species of Fusarium.

Appl Microbiol Biotechnol 2013 Jun 26;97(12):5371-80. Epub 2012 Sep 26.

Department of Energy (DOE) Plant Research Lab and DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1007/s00253-012-4423-3DOI Listing
June 2013

Enhancement of fermentable sugar yields by α-xylosidase supplementation of commercial cellulases.

Biotechnol Biofuels 2013 Apr 26;6(1):58. Epub 2013 Apr 26.

Department of Energy Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA.

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http://dx.doi.org/10.1186/1754-6834-6-58DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3652757PMC
April 2013

Ribosomally encoded cyclic peptide toxins from mushrooms.

Methods Enzymol 2012 ;516:63-77

Department of Energy Plant Research Laboratory, Michigan State University, E. Lansing, Michigan, USA.

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http://dx.doi.org/10.1016/B978-0-12-394291-3.00025-3DOI Listing
February 2013

Scale-up and integration of alkaline hydrogen peroxide pretreatment, enzymatic hydrolysis, and ethanolic fermentation.

Biotechnol Bioeng 2012 Apr 13;109(4):922-31. Epub 2011 Dec 13.

U.S. Department of Energy Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1002/bit.24385DOI Listing
April 2012

Ribosomal biosynthesis of α-amanitin in Galerina marginata.

Fungal Genet Biol 2012 Feb 21;49(2):123-9. Epub 2011 Dec 21.

Department of Energy Plant Research Laboratory, Michigan State University, E. Lansing, MI 48824, United States.

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http://dx.doi.org/10.1016/j.fgb.2011.12.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3997167PMC
February 2012

Biochemical and molecular characterization of secreted α-xylosidase from Aspergillus niger.

J Biol Chem 2011 Dec 27;286(50):42848-54. Epub 2011 Oct 27.

Department of Energy Great Lakes Bioenergy Research Center and Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M111.307397
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http://dx.doi.org/10.1074/jbc.M111.307397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3234869PMC
December 2011

Ribosomal biosynthesis of the cyclic peptide toxins of Amanita mushrooms.

Biopolymers 2010 ;94(5):659-64

Department of Energy Plant Research Laboratory, Michigan State University, E. Lansing, MI 48824, USA.

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http://dx.doi.org/10.1002/bip.21416DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4001729PMC
April 2011

Synthetic multi-component enzyme mixtures for deconstruction of lignocellulosic biomass.

Bioresour Technol 2010 Dec 13;101(23):9097-105. Epub 2010 Jul 13.

Department of Energy Great Lakes Bioenergy Research Center and Department of Energy Plant Research Laboratory, Michigan State University, E. Lansing, MI 48824, USA.

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http://dx.doi.org/10.1016/j.biortech.2010.07.028DOI Listing
December 2010

Colocalization of amanitin and a candidate toxin-processing prolyl oligopeptidase in Amanita basidiocarps.

Eukaryot Cell 2010 Dec 1;9(12):1891-900. Epub 2010 Oct 1.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1128/EC.00161-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3008271PMC
December 2010

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations.

Biotechnol Biofuels 2010 Oct 12;3:22. Epub 2010 Oct 12.

Department of Energy Great Lakes Bioenergy Research Center and Department of Energy Plant Research Laboratory, Michigan State University, East Lansing MI 48824, USA.

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http://biotechnologyforbiofuels.biomedcentral.com/articles/1
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http://dx.doi.org/10.1186/1754-6834-3-22DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2964541PMC
October 2010

Synthetic enzyme mixtures for biomass deconstruction: production and optimization of a core set.

Biotechnol Bioeng 2010 Aug;106(5):707-20

Department of Energy, Great Lakes Bioenergy Research Center, Michigan State University, E. Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1002/bit.22741DOI Listing
August 2010

Effectors, effectors et encore des effectors: the XIV International Congress on Molecular-Plant Microbe Interactions, Quebec.

Mol Plant Microbe Interact 2009 Dec;22(12):1479-83

Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1094/MPMI-22-12-1479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2792922PMC
December 2009

Biosynthesis and role in virulence of the histone deacetylase inhibitor depudecin from Alternaria brassicicola.

Mol Plant Microbe Interact 2009 Oct;22(10):1258-67

Department of Energy - Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.

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http://apsjournals.apsnet.org/doi/10.1094/MPMI-22-10-1258
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http://dx.doi.org/10.1094/MPMI-22-10-1258DOI Listing
October 2009

Processing of the phalloidin proprotein by prolyl oligopeptidase from the mushroom Conocybe albipes.

J Biol Chem 2009 Jul 23;284(27):18070-7. Epub 2009 Apr 23.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1074/jbc.M109.006460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2709354PMC
July 2009

Regulation of the cellulose synthase-like gene family by light in the maize mesocotyl.

Planta 2009 Mar 7;229(4):885-97. Epub 2009 Jan 7.

Department of Energy-Plant Research Laboratory, Michigan State University, E. Lansing, MI 48824, USA.

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http://dx.doi.org/10.1007/s00425-008-0881-3DOI Listing
March 2009

Gene family encoding the major toxins of lethal Amanita mushrooms.

Proc Natl Acad Sci U S A 2007 Nov 19;104(48):19097-101. Epub 2007 Nov 19.

Department of Plant Biology and U.S. Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.

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http://dx.doi.org/10.1073/pnas.0707340104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2141914PMC
November 2007

Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum.

Proteomics 2007 Sep;7(17):3171-83

Department of Energy Plant Research Laboratory, Michigan State University, E. Lansing, MI 48824, USA.

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http://dx.doi.org/10.1002/pmic.200700184DOI Listing
September 2007

HC-toxin.

Phytochemistry 2006 Jul 12;67(14):1406-13. Epub 2006 Jul 12.

Department of Energy Plant Research Laboratory, Michigan State University, E. Lansing, MI 48824, USA.

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http://dx.doi.org/10.1016/j.phytochem.2006.05.033DOI Listing
July 2006

Quantitative trait loci and comparative genomics of cereal cell wall composition.

Plant Physiol 2003 May;132(1):263-71

Department of Agronomy, University of Missouri, Columbia 65211, USA.

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http://dx.doi.org/10.1104/pp.103.020016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC166971PMC
May 2003

Isolation of the carbon catabolite repressor (CREA) gene from the plant-pathogenic fungus Cochliobolus carbonum.

DNA Seq 2003 Apr;14(2):103-7

Department of Biochemistry, Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.

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April 2003

Characterization of inhibitor-resistant histone deacetylase activity in plant-pathogenic fungi.

Eukaryot Cell 2002 Aug;1(4):538-47

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, Michigan 48824, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC118000PMC
August 2002

Cellulose synthase-like genes of rice.

Plant Physiol 2002 Feb;128(2):336-40

Department of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.010875
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http://dx.doi.org/10.1104/pp.010875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1540205PMC
February 2002

An extended physical map of the TOX2 locus of Cochliobolus carbonum required for biosynthesis of HC-toxin.

Fungal Genet Biol 2002 Feb;35(1):31-8

Department of Forest Resources, Konkuk University, Seoul, 143-701, Korea.

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http://dx.doi.org/10.1006/fgbi.2001.1305DOI Listing
February 2002