Jon Wakefield

Jon Wakefield

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Jon Wakefield

Publications by authors named "Jon Wakefield"

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Estimating under-five mortality in space and time in a developing world context.

Stat Methods Med Res 2019 Sep 19;28(9):2614-2634. Epub 2018 Apr 19.

4 Department of Sociology, The Ohio State University, Columbus, USA.

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http://dx.doi.org/10.1177/0962280218767988DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6599729PMC
September 2019

Pointless spatial modeling.

Biostatistics 2018 Sep 6. Epub 2018 Sep 6.

Departments of Biostatistics and Statistics, University of Washington, Seattle, WA, USA.

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https://academic.oup.com/biostatistics/advance-article/doi/1
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http://dx.doi.org/10.1093/biostatistics/kxy041DOI Listing
September 2018

Associations between neighbourhood characteristics and depression: a twin study.

J Epidemiol Community Health 2018 03 22;72(3):202-207. Epub 2017 Dec 22.

Department of Nutrition and Exercise Physiology, Washington State University-Spokane, Spokane, Washington, USA.

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http://dx.doi.org/10.1136/jech-2017-209453DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007871PMC
March 2018

Associations between social capital and depression: A study of adult twins.

Health Place 2018 03 22;50:162-167. Epub 2018 Feb 22.

Department of Nutrition and Exercise Physiology, Washington State University - Health Sciences Spokane, Box 1495, Spokane, WA 99210-1495, United States. Electronic address:

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http://dx.doi.org/10.1016/j.healthplace.2018.02.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834404PMC
March 2018

Efficient Data Augmentation for Fitting Stochastic Epidemic Models to Prevalence Data.

J Comput Graph Stat 2017 9;26(4):918-929. Epub 2017 Oct 9.

Department of Statistics, University of Washington, Seattle.

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http://dx.doi.org/10.1080/10618600.2017.1328365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275108PMC
October 2017

Temporal Trends in Geographic and Sociodemographic Disparities in Colorectal Cancer Among Medicare Patients, 1973-2010.

J Rural Health 2017 09 31;33(4):361-370. Epub 2016 Aug 31.

Division of Gastroenterology, Department of Medicine, University of Washington, Seattle, Washington.

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http://dx.doi.org/10.1111/jrh.12209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5332522PMC
September 2017

Air pollution exposure is associated with MRSA acquisition in young U.S. children with cystic fibrosis.

BMC Pulm Med 2017 Jul 27;17(1):106. Epub 2017 Jul 27.

Division of Pulmonary Medicine, University of Washington School of Medicine, Seattle, WA, USA.

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http://dx.doi.org/10.1186/s12890-017-0449-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530959PMC
July 2017

Seasonality of acquisition of respiratory bacterial pathogens in young children with cystic fibrosis.

BMC Infect Dis 2017 06 9;17(1):411. Epub 2017 Jun 9.

Division of Pulmonary Medicine, University of Washington School of Medicine, Seattle, WA, USA.

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http://dx.doi.org/10.1186/s12879-017-2511-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5466772PMC
June 2017

Time series modeling of pathogen-specific disease probabilities with subsampled data.

Biometrics 2017 03 5;73(1):283-293. Epub 2016 Jul 5.

Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, U.S.A.

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http://dx.doi.org/10.1111/biom.12560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5224700PMC
March 2017

Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression.

Cell 2017 02;168(5):916-927.e12

Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2017.01.038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6219754PMC
February 2017

Comment: Getting into Space with a Weight Problem.

J Am Stat Assoc 2016;111(515):1111-1118. Epub 2016 Oct 18.

Department of Statistics, University of Washington.

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http://dx.doi.org/10.1080/01621459.2016.1200918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343457PMC
October 2016

PREDICTIVE MODELING OF CHOLERA OUTBREAKS IN BANGLADESH.

Ann Appl Stat 2016 Jun 22;10(2):575-595. Epub 2016 Jul 22.

University of Washington.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061460PMC
http://dx.doi.org/10.1214/16-AOAS908DOI Listing
June 2016

Bayesian penalized spline models for the analysis of spatio-temporal count data.

Stat Med 2016 May 3;35(11):1848-65. Epub 2015 Nov 3.

Chinese Center for Disease Control and Prevention, Beijing, China.

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http://dx.doi.org/10.1002/sim.6785DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959802PMC
May 2016

A Bayesian Method for Cluster Detection with Application to Brain and Breast Cancer in Puget Sound.

Epidemiology 2016 May;27(3):347-55

From the aMathematics Department, Middlebury College, Middlebury, VT; and bDepartments of Statistics and Biostatistics, University of Washington, Seattle, WA.

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http://dx.doi.org/10.1097/EDE.0000000000000450DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4821733PMC
May 2016

Restricted Covariance Priors with Applications in Spatial Statistics.

Bayesian Anal 2015 Dec 4;10(4):965-990. Epub 2015 Feb 4.

Departments of Statistics, Biobehavioral Nursing, and Health Systems and the Center for Statistics and the Social Sciences, University of Washington, Seattle, WA 98195.

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http://dx.doi.org/10.1214/14-BA927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705859PMC
December 2015

Space-Time Smoothing of Complex Survey Data: Small Area Estimation for Child Mortality.

Ann Appl Stat 2015 Dec;9(4):1889-1905

Department of Sociology, University of Washington, USA; Institute of Behavioral Science (IBS), University of Colorado at Boulder, Boulder, USA; MRC/Wits Rural Public Health and Health Transitions Research Unit (Agincourt), School of Public Health, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; INDEPTH Network, Accra, Ghana; ALPHA Network, London, UK.

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http://dx.doi.org/10.1214/15-AOAS872DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959836PMC
December 2015

Bayesian hierarchical models for smoothing in two-phase studies, with application to small area estimation.

J R Stat Soc Ser A Stat Soc 2015 10 27;178(4):1009-1023. Epub 2015 Jan 27.

Departments of Biostatistics and Statistics, University of Washington, Seattle, WA USA.

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http://dx.doi.org/10.1111/rssa.12103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4687749PMC
October 2015

Fine particulate matter exposure and initial Pseudomonas aeruginosa acquisition in cystic fibrosis.

Ann Am Thorac Soc 2015 Mar;12(3):385-91

1 Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.

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http://dx.doi.org/10.1513/AnnalsATS.201408-400OCDOI Listing
March 2015

Heritable variation of mRNA decay rates in yeast.

Genome Res 2014 Dec 25;24(12):2000-10. Epub 2014 Sep 25.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA;

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http://dx.doi.org/10.1101/gr.175802.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248316PMC
December 2014

The use of sampling weights in Bayesian hierarchical models for small area estimation.

Spat Spatiotemporal Epidemiol 2014 Oct 5;11:33-43. Epub 2014 Aug 5.

Department of Statistics, University of Auckland, New Zealand.

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http://dx.doi.org/10.1016/j.sste.2014.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357363PMC
October 2014

Evolution and genetic architecture of chromatin accessibility and function in yeast.

PLoS Genet 2014 Jul 3;10(7):e1004427. Epub 2014 Jul 3.

Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004427DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4081003PMC
July 2014

Bayesian inference for two-phase studies with categorical covariates.

Biometrics 2013 Jun 22;69(2):469-77. Epub 2013 Apr 22.

Department of Biostatistics, University of Washington, Box 357232, Seattle, WA 98195-7232, USA.

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http://dx.doi.org/10.1111/biom.12019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3714402PMC
June 2013

A Bayesian mixture modeling approach for assessing the effects of correlated exposures in case-control studies.

J Expo Sci Environ Epidemiol 2012 Jul 16;22(4):352-60. Epub 2012 May 16.

Centre for Occupational and Environmental Health, School of Community Based Medicine, Manchester Academic Health Science Centre, University of Manchester, Manchester, UK.

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http://dx.doi.org/10.1038/jes.2012.22DOI Listing
July 2012

Commentary: Genome-wide significance thresholds via Bayes factors.

Authors:
Jon Wakefield

Int J Epidemiol 2012 Feb 15;41(1):286-91. Epub 2012 Feb 15.

Department of Statistics, University of Washington, Seattle, WA 98195-7232, USA.

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http://dx.doi.org/10.1093/ije/dyr241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3304534PMC
February 2012

A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data.

Genome Res 2011 Oct 26;21(10):1728-37. Epub 2011 Aug 26.

Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.119784.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3202289PMC
October 2011

Bayes computation for ecological inference.

Stat Med 2011 May 22;30(12):1381-96. Epub 2011 Feb 22.

Department of Statistics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1002/sim.4214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178414PMC
May 2011

Bayesian inference for generalized linear mixed models.

Biostatistics 2010 Jul 4;11(3):397-412. Epub 2009 Dec 4.

Department of Biostatistics, University of Washington, Seattle, WA 98112, USA.

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http://dx.doi.org/10.1093/biostatistics/kxp053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2883299PMC
July 2010

Spatial clustering of myelodysplastic syndromes (MDS) in the Seattle-Puget Sound region of Washington State.

Cancer Causes Control 2010 Jun 26;21(6):829-38. Epub 2010 Jan 26.

Department of Biostatistics, University of Washington, Seattle, WA, USA.

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http://link.springer.com/10.1007/s10552-010-9509-6
Publisher Site
http://dx.doi.org/10.1007/s10552-010-9509-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196606PMC
June 2010

Ecological Inference in the Social Sciences.

Stat Methodol 2010 May;7(3):307-322

Department of Government, Harvard University, Boston.

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http://dx.doi.org/10.1016/j.stamet.2009.09.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2885825PMC
May 2010

Bayesian methods for examining Hardy-Weinberg equilibrium.

Authors:
Jon Wakefield

Biometrics 2010 Mar 12;66(1):257-65. Epub 2009 May 12.

Department of Statistics, University of Washington, Box 357232, Seattle, Washington 98195-7232, USA.

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http://dx.doi.org/10.1111/j.1541-0420.2009.01267.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535922PMC
March 2010

Bayesian mixture modeling of gene-environment and gene-gene interactions.

Genet Epidemiol 2010 Jan;34(1):16-25

International Agency for Research on Cancer, Lyon, France.

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http://dx.doi.org/10.1002/gepi.20429DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2796715PMC
January 2010

Bayesian mixture modeling using a hybrid sampler with application to protein subfamily identification.

Biostatistics 2010 Jan 20;11(1):18-33. Epub 2009 Aug 20.

Department of Biostatistics, University of Washington, Seattle, WA 98105, USA.

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http://dx.doi.org/10.1093/biostatistics/kxp033DOI Listing
January 2010

Comments on 'The BUGS project: Evolution, critique and future directions'.

Authors:
Jon Wakefield

Stat Med 2009 Nov;28(25):3079-80

Departments of Statistics and Biostatistics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1002/sim.3674DOI Listing
November 2009

Bayes factors for genome-wide association studies: comparison with P-values.

Authors:
Jon Wakefield

Genet Epidemiol 2009 Jan;33(1):79-86

Department of Statistics, University of Washington, Box 357232, Seattle, Washington 98195-7232, USA.

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http://dx.doi.org/10.1002/gepi.20359DOI Listing
January 2009

A transdimensional Bayesian model for pattern recognition in DNA sequences.

Biostatistics 2008 Oct 18;9(4):668-85. Epub 2008 Mar 18.

Division of Oncology Biostatistics, Sidney Kimmel Cancer Center, Johns Hopkins School of Medicine, Baltimore, MD 21205-2013, USA.

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http://dx.doi.org/10.1093/biostatistics/kxm058DOI Listing
October 2008

Gamma generalized linear models for pharmacokinetic data.

Biometrics 2008 Jun 20;64(2):620-6. Epub 2007 Sep 20.

Department of Mathematical Sciences, University of Bath, Bath BA2 7AY, UK.

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http://dx.doi.org/10.1111/j.1541-0420.2007.00897.xDOI Listing
June 2008

Reporting and interpretation in genome-wide association studies.

Authors:
Jon Wakefield

Int J Epidemiol 2008 Jun 11;37(3):641-53. Epub 2008 Feb 11.

Departments of Statistics and Biostatistics, University of Washington, Seattle, USA.

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http://dx.doi.org/10.1093/ije/dym257DOI Listing
June 2008

Overcoming ecologic bias using the two-phase study design.

Am J Epidemiol 2008 Apr 12;167(8):908-16. Epub 2008 Feb 12.

Department of Statistics, University of Washington, Seattle, WA 98195-7232, USA.

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http://dx.doi.org/10.1093/aje/kwm386DOI Listing
April 2008

A hybrid model for reducing ecological bias.

Biostatistics 2008 Jan 16;9(1):1-17. Epub 2007 Jun 16.

Department of Mathematical Sciences, University of Bath, Bath, UK.

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http://dx.doi.org/10.1093/biostatistics/kxm022DOI Listing
January 2008

Alleviating Linear Ecological Bias and Optimal Design with Sub-sample Data.

J R Stat Soc Ser A Stat Soc 2008 01;171(1):179-202

Department of Statistics, University of Washington, Seattle, USA.

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http://dx.doi.org/10.1111/j.1467-985X.2007.00511.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2801082PMC
January 2008

A Bayesian measure of the probability of false discovery in genetic epidemiology studies.

Authors:
Jon Wakefield

Am J Hum Genet 2007 Aug 3;81(2):208-27. Epub 2007 Jul 3.

Department of Biostatistics, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1086/519024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950810PMC
August 2007

Disease mapping and spatial regression with count data.

Authors:
Jon Wakefield

Biostatistics 2007 Apr 29;8(2):158-83. Epub 2006 Jun 29.

Departments of Statistics and Biostatistics, University of Washington, Seattle, WA 98195-7232, USA.

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http://dx.doi.org/10.1093/biostatistics/kxl008DOI Listing
April 2007

The automated counting of spots for the ELISpot assay.

J Immunol Methods 2006 Oct 12;316(1-2):52-8. Epub 2006 Sep 12.

Fred Hutchinson Cancer Research Center, Statistical Center for HIV Aids Research and Prevention, 1100 Fairview Avenue, LE-400, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1016/j.jim.2006.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1945247PMC
October 2006

Health-exposure modeling and the ecological fallacy.

Biostatistics 2006 Jul 20;7(3):438-55. Epub 2006 Jan 20.

Department of Statistics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1093/biostatistics/kxj017DOI Listing
July 2006

A Bayesian mixture model for partitioning gene expression data.

Biometrics 2006 Jun;62(2):515-25

Department of Biostatistics, S-2323 MCN, Vanderbilt University, Nashville, Tennessee 37232-2158, USA.

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http://doi.wiley.com/10.1111/j.1541-0420.2005.00492.x
Publisher Site
http://dx.doi.org/10.1111/j.1541-0420.2005.00492.xDOI Listing
June 2006

Modelling exposure to disinfection by-products in drinking water for an epidemiological study of adverse birth outcomes.

J Expo Anal Environ Epidemiol 2005 Mar;15(2):138-46

Small Area Health Statistics Unit, Department of Epidemiology and Public Health, Imperial College London, UK.

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http://dx.doi.org/10.1038/sj.jea.7500380DOI Listing
March 2005

Issues in the mapping of two diseases.

Stat Methods Med Res 2005 Feb;14(1):83-112

Department of Biostatistics, University of Washington, Seattle, WA 98195-7232, USA.

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http://dx.doi.org/10.1191/0962280205sm340oaDOI Listing
February 2005

Controlling for provider of treatment in the modelling of respiratory disease risk near cokeworks.

Stat Med 2004 Oct;23(20):3139-58

Department of Epidemiology and Public Health, Imperial College School of Medicine, St Mary's Campus, Norfolk Place, London W2 1PG, U.K.

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http://dx.doi.org/10.1002/sim.1880DOI Listing
October 2004

Trends in drug overdose deaths in England and Wales 1993-98: methadone does not kill more people than heroin.

Addiction 2003 Apr;98(4):419-25

Centre for Research on Drugs and Health Behaviour, Social Science and Medicine, Imperial College, London, UK.

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http://dx.doi.org/10.1046/j.1360-0443.2003.00294.xDOI Listing
April 2003

Sensitivity analyses for ecological regression.

Authors:
Jon Wakefield

Biometrics 2003 Mar;59(1):9-17

Department of Statistics, University of Washington, Seattle, Washington 98195-7232, USA.

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March 2003

A hierarchical aggregate data model with spatially correlated disease rates.

Biometrics 2002 Dec;58(4):898-905

Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue N, Seattle, Washington 98109, USA.

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December 2002

Bayesian analysis of population PK/PD models: general concepts and software.

J Pharmacokinet Pharmacodyn 2002 Jun;29(3):271-307

Department of Epidemiology and Public Health, Imperial College School of Medicine, Norfolk Place, London W2 1PG, UK.

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June 2002

Geographical epidemiology of prostate cancer in Great Britain.

Int J Cancer 2002 Feb;97(5):695-9

The Small Area Health Statistics Unit, Department of Epidemiology and Public Health, Imperial College School of Medicine, London, United Kingdom.

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http://dx.doi.org/10.1002/ijc.10113DOI Listing
February 2002