Jon Bohlin

Jon Bohlin

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Jon Bohlin

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Statistical predictions with glmnet.

Clin Epigenetics 2019 Aug 23;11(1):123. Epub 2019 Aug 23.

Division for Infection Control and Environmental Health, Department of Infectious Disease Epidemiology and Modelling, Norwegian Institute of Public Health, Oslo, Norway.

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http://dx.doi.org/10.1186/s13148-019-0730-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6708235PMC
August 2019

Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals.

Comput Struct Biotechnol J 2019 7;17:362-370. Epub 2019 Mar 7.

Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School the University of Sydney, New South Wales 2006, Australia.

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http://dx.doi.org/10.1016/j.csbj.2019.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429543PMC
March 2019

Modeling of the GC content of the substituted bases in bacterial core genomes.

BMC Genomics 2018 Aug 6;19(1):589. Epub 2018 Aug 6.

Norwegian Institute of Public Health, Lovisenberggata 8, P.O. Box 4404, 0403, Oslo, Norway.

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http://dx.doi.org/10.1186/s12864-018-4984-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6080486PMC
August 2018

Whole-genome sequencing and antimicrobial resistance in Brucella melitensis from a Norwegian perspective.

Sci Rep 2018 06 4;8(1):8538. Epub 2018 Jun 4.

Division of Infection Control and Environmental Health, Norwegian Institute of Public Health, PO Box 4404 Nydalen, N-0403, Oslo, Norway.

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http://dx.doi.org/10.1038/s41598-018-26906-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986768PMC
June 2018

Draft Genome Sequence of a Potentially Novel Streptococcus Species Belonging to the Streptococcus mitis Group.

Genome Announc 2018 Jun 28;6(26). Epub 2018 Jun 28.

Division of Infection Control and Environmental Sciences, Norwegian Institute of Public Health, Oslo, Norway

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http://dx.doi.org/10.1128/genomeA.00620-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6025937PMC
June 2018

Acquisition of virulence genes by a carrier strain gave rise to the ongoing epidemics of meningococcal disease in West Africa.

Proc Natl Acad Sci U S A 2018 05 7;115(21):5510-5515. Epub 2018 May 7.

Division for Infection Control and Environmental Health, Norwegian Institute of Public Health, 0456 Oslo, Norway.

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http://dx.doi.org/10.1073/pnas.1802298115DOI Listing
May 2018

Re-visiting the evolution, dispersal and epidemiology of Zika virus in Asia.

Emerg Microbes Infect 2018 May 9;7(1):79. Epub 2018 May 9.

UMR "Unité des Virus Emergents", Aix-Marseille Université-IRD 190-Inserm 1207-IHU Méditerranée Infection, Marseille, France.

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http://dx.doi.org/10.1038/s41426-018-0082-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940881PMC
May 2018

Transfer of a bla -carrying plasmid between different Escherichia coli strains within the human gut explored by whole genome sequencing analyses.

Sci Rep 2018 01 10;8(1):280. Epub 2018 Jan 10.

Department of Methodology Research and Analysis, Domain of Infection Control and Environmental Health, Norwegian Institute of Public Health, PB 4404 Nydalen, 0403, Oslo, Norway.

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http://dx.doi.org/10.1038/s41598-017-18659-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762863PMC
January 2018

Hot chicks, cold feet.

Physiol Behav 2017 Oct 19;179:42-48. Epub 2017 May 19.

Norwegian Veterinary Institute, Department of Animal Health and Food Safety, Section for Animal Health, Wildlife and Welfare, P.O. Box 750, Sentrum, N-0106 Oslo, Norway.

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http://dx.doi.org/10.1016/j.physbeh.2017.05.025DOI Listing
October 2017

Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: findings from the pregnancy and childhood epigenetics (PACE) consortium.

Hum Mol Genet 2017 10;26(20):4067-4085

MRC Integrative Epidemiology Unit.

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http://dx.doi.org/10.1093/hmg/ddx290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5656174PMC
October 2017

Characterizing the virome of Ixodes ricinus ticks from northern Europe.

Sci Rep 2017 09 7;7(1):10870. Epub 2017 Sep 7.

Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, the University of Sydney, Sydney, New South Wales, 2006, Australia.

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http://dx.doi.org/10.1038/s41598-017-11439-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5589870PMC
September 2017

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes.

BMC Genomics 2017 02 10;18(1):151. Epub 2017 Feb 10.

Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, 1430, Ås, Norway.

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http://dx.doi.org/10.1186/s12864-017-3543-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5303225PMC
February 2017

Erratum to: Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary.

Genome Biol 2016 Dec 19;17(1):262. Epub 2016 Dec 19.

Domain of Infectious Disease Control and Environmental Health, Norwegian Institute of Public Health, Oslo, Norway.

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http://dx.doi.org/10.1186/s13059-016-1132-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5165719PMC
December 2016

Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary.

Genome Biol 2016 11 25;17(1):238. Epub 2016 Nov 25.

Domain of Infectious Disease Control and Environmental Health, Norwegian Institute of Public Health, Oslo, Norway.

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http://dx.doi.org/10.1186/s13059-016-1108-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5124306PMC
November 2016

Plasmid-mediated colistin-resistant Escherichia coli detected from 2014 in Norway.

Int J Antimicrob Agents 2016 Aug 22;48(2):227-8. Epub 2016 Jun 22.

Domain for Infection Control and Environmental Health, Norwegian Institute of Public Health, P.O. Box 4404 Nydalen, N-0403 Oslo, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2016.06.001DOI Listing
August 2016

A Partial Least Squares Based Procedure for Upstream Sequence Classification in Prokaryotes.

IEEE/ACM Trans Comput Biol Bioinform 2015 May-Jun;12(3):560-7

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http://dx.doi.org/10.1109/TCBB.2014.2366146DOI Listing
June 2016

Genome expansion in bacteria: the curios case of Chlamydia trachomatis.

Authors:
Jon Bohlin

BMC Res Notes 2015 Sep 30;8:512. Epub 2015 Sep 30.

Department of Bacteriology and Immunology, Norwegian Institute of Public Health, Lovisenberggata 6, P.O. Box 4404, 0403, Oslo, Norway.

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http://dx.doi.org/10.1186/s13104-015-1464-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589037PMC
September 2015

CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data.

Bioinformatics 2015 Jun 1;31(11):1708-15. Epub 2015 Feb 1.

Section for Biostatistics and Epidemiology, Norwegian University of Life Sciences (NMBU), Oslo, Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås and Norwegian Institute of Public Health, Division of Epidemiology, 0403 Oslo, Norway.

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http://dx.doi.org/10.1093/bioinformatics/btv070DOI Listing
June 2015

An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli.

BMC Genomics 2014 Oct 9;15:882. Epub 2014 Oct 9.

Division of Epidemiology, Norwegian Institute of Public Health, Marcus Thranes gate 6, P,O, Box 4404, Oslo 0403, Norway.

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http://dx.doi.org/10.1186/1471-2164-15-882DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4200225PMC
October 2014

Positive correlations between genomic %AT and genome size within strains of bacterial species.

Environ Microbiol Rep 2014 Jun 25;6(3):278-86. Epub 2014 Mar 25.

Division of Epidemiology, Norwegian Institute of Public Health, Marcus Thranes Gate 6, P.O. Box 4404, 0403, Oslo, Norway; Epi-Centre, Department of Food-Safety and Infection Biology, Norwegian School of Veterinary Science, Ullevålsveien 72, P.O. Box 8146 Dep, NO-0033, Oslo, Norway.

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http://dx.doi.org/10.1111/1758-2229.12145DOI Listing
June 2014

Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes.

PLoS One 2013 26;8(7):e69878. Epub 2013 Jul 26.

Centre for Epidemiology and Biostatistics, Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0069878PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3724673PMC
April 2014

Veillonella, Firmicutes: Microbes disguised as Gram negatives.

Stand Genomic Sci 2013 Dec 15;9(2):431-48. Epub 2013 Dec 15.

Comparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.

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http://dx.doi.org/10.4056/sigs.2981345DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062629PMC
December 2013

Epidemic characterization and modeling within herd transmission dynamics of an "emerging trans-boundary" camel disease epidemic in Ethiopia.

Trop Anim Health Prod 2012 Oct 14;44(7):1643-51. Epub 2012 Mar 14.

School of Veterinary Medicine, Hawassa University, P.O. Box 05, Hawassa, Ethiopia.

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http://dx.doi.org/10.1007/s11250-012-0119-zDOI Listing
October 2012

Peripheral temperature drop in response to anticipation and consumption of a signaled palatable reward in laying hens (Gallus domesticus).

Physiol Behav 2012 Jun 5;106(4):527-33. Epub 2012 Apr 5.

Norwegian School of Veterinary Science, Box 8146 Dep., NO-0033 Oslo, Norway.

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http://dx.doi.org/10.1016/j.physbeh.2012.03.032DOI Listing
June 2012

Exploration of multivariate analysis in microbial coding sequence modeling.

BMC Bioinformatics 2012 May 14;13:97. Epub 2012 May 14.

Biostatistics, Department of Chemistry, Biotechnology and Food Sciences, Norwegian University of Life Sciences, Aas, Norway.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-13-97DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3473301PMC
May 2012

Growth comparison of several Escherichia coli strains exposed to various concentrations of lactoferrin using linear spline regression.

Microb Inform Exp 2012 Apr 16;2. Epub 2012 Apr 16.

Norwegian School of Veterinary Science, Epi-Centre, Department of Food Safety and Infection Biolog, P,O, Box 8146 Dep, N-0033, Oslo, Norway.

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http://dx.doi.org/10.1186/2042-5783-2-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432007PMC
April 2012

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands.

BMC Genomics 2012 Feb 10;13:66. Epub 2012 Feb 10.

Norwegian School of Veterinary Science, EpiCentre, Department of Food Safety and Infection biology, Ullevålsveien 72, Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2164-13-66DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3305612PMC
February 2012

Rabies in the arctic fox population, Svalbard, Norway.

J Wildl Dis 2011 Oct;47(4):945-57

National Veterinary Institute, Stakkevollveien 23, N-9010 Tromsø, Norway.

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http://dx.doi.org/10.7589/0090-3558-47.4.945DOI Listing
October 2011

Immune responses in Atlantic salmon (Salmo salar) following protective vaccination against infectious salmon anemia (ISA) and subsequent ISA virus infection.

Vaccine 2011 Aug 7;29(37):6392-401. Epub 2011 May 7.

Department of Food Safety and Infection Biology, The Norwegian School of Veterinary Science, P.O. 8146 Dep, N-0033 Oslo, Norway.

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http://dx.doi.org/10.1016/j.vaccine.2011.04.074DOI Listing
August 2011

Using an insect model to assess correlation between temperature and virulence in Bacillus weihenstephanensis and Bacillus cereus.

FEMS Microbiol Lett 2011 Apr 17;317(2):196-202. Epub 2011 Feb 17.

Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Section for Food Safety, Oslo, Norway.

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http://dx.doi.org/10.1111/j.1574-6968.2011.02229.xDOI Listing
April 2011

Genomic signatures in microbes -- properties and applications.

Authors:
Jon Bohlin

ScientificWorldJournal 2011 Mar 22;11:715-25. Epub 2011 Mar 22.

Department of Food Safety and Infection Biology, Norwegian School of Veterinary Science, Oslo, Norway.

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http://dx.doi.org/10.1100/tsw.2011.70DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5595254PMC
March 2011

Applying fractal analysis to heart rate time series of sheep experiencing pain.

Physiol Behav 2010 Aug 5;101(1):74-80. Epub 2010 May 5.

Norwegian School of Veterinary Science, Department of Production Animal Clinical Sciences, P.O. Box 8146 Dep., NO-0033 Oslo, Norway.

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http://linkinghub.elsevier.com/retrieve/pii/S003193841000176
Publisher Site
http://dx.doi.org/10.1016/j.physbeh.2010.04.018DOI Listing
August 2010

Analysis of intra-genomic GC content homogeneity within prokaryotes.

BMC Genomics 2010 Aug 6;11:464. Epub 2010 Aug 6.

Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, Ullevålsveien 72, P,O, Box 8146 Dep, NO-0033 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2164-11-464DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091660PMC
August 2010

Molecular epidemiology of salmonid alphavirus (SAV) subtype 3 in Norway.

Virol J 2010 Aug 11;7:188. Epub 2010 Aug 11.

Center for Epidemiology and Biostatistics, Norwegian School of Veterinary Science, Oslo, Norway.

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http://dx.doi.org/10.1186/1743-422X-7-188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2925375PMC
August 2010

Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods.

BMC Evol Biol 2010 Aug 13;10:249. Epub 2010 Aug 13.

Norwegian School of Veterinary Science, Department of Food Safety and Infection Biology, Epicenter, Ullevålsveien 72, PO Box 8146 Dep, NO-0033 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2148-10-249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2928237PMC
August 2010

Molecular characterization of Mycobacterium bovis isolates from Ethiopian cattle.

BMC Vet Res 2010 May 27;6:28. Epub 2010 May 27.

Center for Epidemiology and Biostatistics, Norwegian School of Veterinary Science, PO Box 8146, N-0033, Oslo, Norway.

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http://dx.doi.org/10.1186/1746-6148-6-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2886024PMC
May 2010

Examination of genome homogeneity in prokaryotes using genomic signatures.

PLoS One 2009 Dec 2;4(12):e8113. Epub 2009 Dec 2.

Department of Food Safety, Norwegian School of Veterinary Science, Oslo, Norway.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008113PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2781299PMC
December 2009

Investigations of oligonucleotide usage variance within and between prokaryotes.

PLoS Comput Biol 2008 Apr 18;4(4):e1000057. Epub 2008 Apr 18.

Norwegian School of Veterinary Science, Oslo, Norway.

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http://dx.doi.org/10.1371/journal.pcbi.1000057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2289840PMC
April 2008

Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes.

BMC Genomics 2008 Feb 28;9:104. Epub 2008 Feb 28.

Norwegian School of Veterinary Science, P.O. Box 8146 Dep., N-0033 Oslo, Norway.

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http://dx.doi.org/10.1186/1471-2164-9-104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2289816PMC
February 2008

Genome update: purine strand bias in 280 bacterial genomes.

Microbiology 2006 Mar;152(Pt 3):579-83

Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs, Lyngby, Denmark.

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http://dx.doi.org/10.1099/mic.0.28637-0DOI Listing
March 2006