John S Taylor

John S Taylor

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John S Taylor

John S Taylor

Publications by authors named "John S Taylor"

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Parallel opsin switches in multiple cone types of the starry flounder retina: tuning visual pigment composition for a demersal life style.

Sci Rep 2018 03 19;8(1):4763. Epub 2018 Mar 19.

Department of Biology, University of Victoria, Victoria, British Columbia, V8W 2Y2, Canada.

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http://dx.doi.org/10.1038/s41598-018-23008-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5859124PMC
March 2018

Fine-tuning light sensitivity in the starry flounder (Platichthys stellatus) retina: Regional variation in photoreceptor cell morphology and opsin gene expression.

J Comp Neurol 2017 Jul 21;525(10):2328-2342. Epub 2017 Apr 21.

Department of Biology, University of Victoria, Victoria, British Columbia, Canada.

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http://dx.doi.org/10.1002/cne.24205DOI Listing
July 2017

Opsin gene repertoires in northern archaic hominids.

Genome 2016 Aug 25;59(8):541-9. Epub 2016 May 25.

Department of Biology, University of Victoria, Station CSC, P.O. Box 3020, Victoria, BC V8W 3N5, Canada.

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http://dx.doi.org/10.1139/gen-2015-0164DOI Listing
August 2016

Conservation of the Host-Interacting Proteins Tp0750 and Pallilysin among Treponemes and Restriction of Proteolytic Capacity to Treponema pallidum.

Infect Immun 2015 Nov 17;83(11):4204-16. Epub 2015 Aug 17.

Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada

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http://dx.doi.org/10.1128/IAI.00643-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4598410PMC
November 2015

Did Neanderthals and Denisovans have our de novo genes?

Authors:
John S Taylor

J Mol Evol 2014 Jun 22;78(6):321-3. Epub 2014 Jun 22.

Department of Biology, University of Victoria, PO Box 1700, Station CSC, Victoria, BC, V8W 2Y2, Canada,

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http://dx.doi.org/10.1007/s00239-014-9628-xDOI Listing
June 2014

Risk factors for fractures and avascular osteonecrosis in type 1 Gaucher disease: a study from the International Collaborative Gaucher Group (ICGG) Gaucher Registry.

J Bone Miner Res 2012 Aug;27(8):1839-48

Metabolic Diseases Clinic, University of Calgary, Alberta Children's Hospital, Calgary, Alberta, Canada.

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http://dx.doi.org/10.1002/jbmr.1680DOI Listing
August 2012

The polyphenol oxidase gene family in land plants: Lineage-specific duplication and expansion.

BMC Genomics 2012 Aug 16;13:395. Epub 2012 Aug 16.

Centre for Forest Biology and Department of Biology, University of Victoria, Station CSC, Victoria, BC, Canada.

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http://dx.doi.org/10.1186/1471-2164-13-395DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472199PMC
August 2012

Opsin gene duplication and divergence in ray-finned fish.

Mol Phylogenet Evol 2012 Mar 8;62(3):986-1008. Epub 2011 Dec 8.

University of Victoria, Department of Biology, Station CSC, Victoria, BC, Canada V8W 3N5.

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http://dx.doi.org/10.1016/j.ympev.2011.11.030DOI Listing
March 2012

In the four-eyed fish (Anableps anableps), the regions of the retina exposed to aquatic and aerial light do not express the same set of opsin genes.

Biol Lett 2012 Feb 20;8(1):86-9. Epub 2011 Jul 20.

Department of Biology, University of Victoria, Victoria, British Columbia, Canada.

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http://dx.doi.org/10.1098/rsbl.2011.0582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3259961PMC
February 2012

Intra-retinal variation of opsin gene expression in the guppy (Poecilia reticulata).

J Exp Biol 2011 Oct;214(Pt 19):3248-54

Department of Zoology and Biodiversity Research Centre, University of British Columbia, 2370-6270 University Boulevard, Vancouver, BC, Canada, V6T 1Z4.

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http://dx.doi.org/10.1242/jeb.057836DOI Listing
October 2011

Reducing selection bias in case-control studies from rare disease registries.

Orphanet J Rare Dis 2011 Sep 12;6:61. Epub 2011 Sep 12.

Biomedical Data Sciences and Informatics, Genzyme, a Sanofi Company, 500 Kendall Street, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1186/1750-1172-6-61DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3200984PMC
September 2011

The antiquity of chordate odorant receptors is revealed by the discovery of orthologs in the cnidarian Nematostella vectensis.

Genome Biol Evol 2011 1;3:36-43. Epub 2010 Dec 1.

Department of Biology, University of Victoria, Station CSC, Victoria, British Columbia, Canada.

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http://dx.doi.org/10.1093/gbe/evq079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017388PMC
April 2011

The incidence of Parkinsonism in patients with type 1 Gaucher disease: data from the ICGG Gaucher Registry.

Blood Cells Mol Dis 2011 Jan 10;46(1):95-102. Epub 2010 Nov 10.

Tower Hematology Oncology, 9090 Wilshire Boulevard, Suite 200, Beverley Hills, CA 90211, USA.

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http://dx.doi.org/10.1016/j.bcmd.2010.10.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662380PMC
January 2011

Amphioxus (Branchiostoma floridae) has orthologs of vertebrate odorant receptors.

BMC Evol Biol 2009 Oct 5;9:242. Epub 2009 Oct 5.

Department of Biology, University of Victoria, Victoria BC, Canada.

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http://dx.doi.org/10.1186/1471-2148-9-242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2764704PMC
October 2009

A fish eye out of water: ten visual opsins in the four-eyed fish, Anableps anableps.

PLoS One 2009 Jun 24;4(6):e5970. Epub 2009 Jun 24.

Department of Biology, University of Victoria, Victoria, British Columbia, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0005970PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2696081PMC
June 2009

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

Parallel evolution and vicariance in the guppy (Poecilia reticulata) over multiple spatial and temporal scales.

Evolution 2006 Nov;60(11):2352-69

Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada.

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November 2006

A comprehensive collaborative patient safety residency curriculum to address the ACGME core competencies.

Med Educ 2005 Dec;39(12):1195-204

Department of Family Medicine, School of Medicine and Biomedical Sciences, State University of New York at Buffalo, New York, USA.

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http://doi.wiley.com/10.1111/j.1365-2929.2005.02333.x
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http://dx.doi.org/10.1111/j.1365-2929.2005.02333.xDOI Listing
December 2005

Duplication and divergence: the evolution of new genes and old ideas.

Annu Rev Genet 2004 ;38:615-43

Department of Biology, University of Victoria, British Columbia V8W 3N5, Canada.

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http://dx.doi.org/10.1146/annurev.genet.38.072902.092831DOI Listing
March 2005

Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

J Mol Evol 2004 Aug;59(2):190-203

Department of Biology, University of Konstanz, 78457 Konstanz, Germany.

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http://dx.doi.org/10.1007/s00239-004-2613-zDOI Listing
August 2004

Salmonid opsin sequences undergo positive selection and indicate an alternate evolutionary relationship in oncorhynchus.

J Mol Evol 2004 Apr;58(4):400-12

Department of Biology, University of Victoria, P.O. Box 3020 STN CSC, Victoria, British Columbia, Canada V8W 3N5.

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http://dx.doi.org/10.1007/s00239-003-2562-yDOI Listing
April 2004

Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates.

Proc Natl Acad Sci U S A 2004 Feb 2;101(6):1638-43. Epub 2004 Feb 2.

Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium.

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http://dx.doi.org/10.1073/pnas.0307968100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC341801PMC
February 2004

Identification of Nogo-66 receptor (NgR) and homologous genes in fish.

Mol Biol Evol 2004 Jan 29;21(1):76-85. Epub 2003 Aug 29.

Department of Biology, University of Konstanz, Konstanz, Germany.

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http://dx.doi.org/10.1093/molbev/msg241DOI Listing
January 2004

Are all fishes ancient polyploids?

J Struct Funct Genomics 2003 ;3(1-4):65-73

Department of Plant Systems Biology, Vlaams Interuniversitair Instituut voor Biotechnologie (VIB), Ghent University, K.L. Ledeganckstraat 35, B-9000 Gent, Belgium.

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http://bioinformatics.psb.ugent.be/pdf/JSFG_3_65_2003.pdf
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https://pdfs.semanticscholar.org/8f03/6e27f189448280a1fb631e
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July 2003

Genome duplication, a trait shared by 22000 species of ray-finned fish.

Genome Res 2003 Mar;13(3):382-90

Department of Biology, University of Konstanz, D-78457, Konstanz, Germany.

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http://dx.doi.org/10.1101/gr.640303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430266PMC
March 2003

Wanda: a database of duplicated fish genes.

Nucleic Acids Res 2002 Jan;30(1):109-12

Department of Biology, University of Konstanz, D-78457 Konstanz, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99142PMC
http://dx.doi.org/10.1093/nar/30.1.109DOI Listing
January 2002