John S Mattick

John S Mattick

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John S Mattick

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Accurate detection of mA RNA modifications in native RNA sequences.

Nat Commun 2019 Sep 9;10(1):4079. Epub 2019 Sep 9.

Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, 08003, Barcelona, Spain.

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http://dx.doi.org/10.1038/s41467-019-11713-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6734003PMC
September 2019

Whole genome sequencing provides better diagnostic yield and future value than whole exome sequencing.

Med J Aust 2018 08 9;209(5):197-199. Epub 2018 Apr 9.

Kinghorn Centre of Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW.

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August 2018

The State of Long Non-Coding RNA Biology.

Authors:
John S Mattick

Noncoding RNA 2018 Aug 10;4(3). Epub 2018 Aug 10.

Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; Green Templeton College, Oxford OX2 6HG, UK; Genomics England, London EC1M 6BQ, UK.

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http://dx.doi.org/10.3390/ncrna4030017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6162524PMC
August 2018

Universal Alternative Splicing of Noncoding Exons.

Cell Syst 2018 Feb 24;6(2):245-255.e5. Epub 2018 Jan 24.

Garvan Institute of Medical Research, Sydney, NSW, Australia; St Vincent's Clinical School, University of New South Wales, Sydney, NSW, Australia; Altius Institute for Biomedical Sciences, Seattle, WA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2017.12.005DOI Listing
February 2018

Structural and Functional Annotation of Long Noncoding RNAs.

Methods Mol Biol 2017 ;1526:65-85

RNA Biology and Plasticity Laboratory, Garvan Institute of Medical Research, 384 Victoria St, Darlinghurst, NSW, 2010, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6613-4_4DOI Listing
January 2018

The RNA modification landscape in human disease.

RNA 2017 12 30;23(12):1754-1769. Epub 2017 Aug 30.

Garvan Institute of Medical Research, Darlinghurst, 2010 NSW, Australia.

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http://dx.doi.org/10.1261/rna.063503.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5688997PMC
December 2017

DotAligner: identification and clustering of RNA structure motifs.

Genome Biol 2017 12 28;18(1):244. Epub 2017 Dec 28.

RNA Biology and Plasticity Group, Garvan Institute of Medical Research, 384 Victoria Street, Sydney, NSW 2010, Australia.

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https://genomebiology.biomedcentral.com/articles/10.1186/s13
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http://dx.doi.org/10.1186/s13059-017-1371-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747123PMC
December 2017

Prioritising the application of genomic medicine.

NPJ Genom Med 2017 21;2:35. Epub 2017 Nov 21.

Garvan Institute of Medical Research, Sydney, NSW 2010 Australia.

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http://dx.doi.org/10.1038/s41525-017-0037-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5698310PMC
November 2017

Seq and You Will Find.

Curr Gene Ther 2016 ;16(3):220-9

Garvan Institute of Medical Research, Darlinghurst, 2010, NSW, Australia.

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October 2017

The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome.

Trends Genet 2017 07 20;33(7):464-478. Epub 2017 May 20.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, NSW, Australia; School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney, NSW, Australia; St Vincent's Clinical School, University of New South Wales, Sydney, NSW, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2017.04.004DOI Listing
July 2017

Charting the unknown epitranscriptome.

Nat Rev Mol Cell Biol 2017 06 10;18(6):339-340. Epub 2017 May 10.

Garvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia.

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http://dx.doi.org/10.1038/nrm.2017.49DOI Listing
June 2017

Differential intron retention in chromatin modifier genes is implicated in reptile temperature-dependent sex determination.

Sci Adv 2017 06 14;3(6):e1700731. Epub 2017 Jun 14.

Institute for Applied Ecology, University of Canberra, Canberra, Australian Capital Territory, Australia.

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http://dx.doi.org/10.1126/sciadv.1700731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5470834PMC
June 2017

Representing genetic variation with synthetic DNA standards.

Nat Methods 2016 09 8;13(9):784-91. Epub 2016 Aug 8.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, New South Wales, Australia.

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http://dx.doi.org/10.1038/nmeth.3957DOI Listing
September 2016

Spliced synthetic genes as internal controls in RNA sequencing experiments.

Nat Methods 2016 09 8;13(9):792-8. Epub 2016 Aug 8.

Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1038/nmeth.3958DOI Listing
September 2016

The promise of personalised medicine.

Lancet 2016 Jan;387(10017):433-4

Garvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia; St Vincent's Clinical School, University of New South Wales, Sydney, NSW, Australia. Electronic address:

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http://dx.doi.org/10.1016/S0140-6736(16)00176-8DOI Listing
January 2016

Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated With Anxiety-like Behavior in Mice.

Biol Psychiatry 2015 Dec 11;78(12):848-59. Epub 2015 Feb 11.

Queensland Brain Institute, The University of Queensland Australia, Brisbane, Queensland. Electronic address:

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http://dx.doi.org/10.1016/j.biopsych.2015.02.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532653PMC
December 2015

Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution.

Neuron 2015 Dec;88(5):861-877

Garvan Institute of Medical Research, Sydney, NSW 2010, Australia; St. Vincent's Clinical School and School of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, NSW 2052, Australia.

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http://dx.doi.org/10.1016/j.neuron.2015.09.045DOI Listing
December 2015

Transpositional shuffling and quality control in male germ cells to enhance evolution of complex organisms.

Ann N Y Acad Sci 2015 Apr 31;1341:156-63. Epub 2014 Dec 31.

RNA Biology Group, Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle, United Kingdom.

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http://doi.wiley.com/10.1111/nyas.12608
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http://dx.doi.org/10.1111/nyas.12608DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390386PMC
April 2015

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.

Nat Methods 2015 Apr 9;12(4):339-42. Epub 2015 Mar 9.

1] Garvan Institute of Medical Research, Sydney, Australia. [2] St Vincents Clinical School, Faculty of Medicine, University of New South Wales, Sydney, Australia.

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http://dx.doi.org/10.1038/nmeth.3321DOI Listing
April 2015

Genome-wide discovery of human splicing branchpoints.

Genome Res 2015 Feb 5;25(2):290-303. Epub 2015 Jan 5.

Garvan Institute of Medical Research, Sydney, New South Wales 2010, Australia; St. Vincent's Clinical School, Faculty of Medicine, UNSW Australia, Sydney, New South Wales 2052, Australia;

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http://genome.cshlp.org/lookup/doi/10.1101/gr.182899.114
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http://dx.doi.org/10.1101/gr.182899.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4315302PMC
February 2015

Discovery and annotation of long noncoding RNAs.

Nat Struct Mol Biol 2015 Jan;22(1):5-7

Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts, USA, the Department of Pathology, Beth Israel Deaconess Medical Center, Boston, Massachusetts, USA, and the Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nsmb.2942DOI Listing
January 2015

Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.

Mol Cell 2014 Oct 18;56(2):193-204. Epub 2014 Sep 18.

John van Geest Centre for Brain Repair, Department of Clinical Neurosciences, and NIHR Biomedical Research Centre, University of Cambridge, CB2 0PY Cambridge, UK; Wellcome Trust-Medical Research Council Stem Cell Institute, Cambridge, UK. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2014.08.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578249PMC
October 2014

Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression.

J Natl Cancer Inst 2014 Jul 6;106(7). Epub 2014 Jun 6.

Affiliations of authors: Children's Cancer Institute Australia for Medical Research, Randwick NSW, Australia (PYL, GMM, AET, MW, BL, BBC, MK, TL); Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy (DE, GM, GP); Kids Cancer Centre, Sydney Children's Hospital, Randwick NSW, Australia (GMM); Department of Pathology and Inflammation and Infection Research Centre, University of New South Wales, Kensington 2052, Australia (PP); Institute of Molecular Medicine, Martin Luther University, ZAMED, Halle, Germany (JLB, SH); School of Medicine and Public Health, Priority Research Centre for Cancer Research, University of Newcastle, Callaghan NSW, Australia (XDZ); Harry Perkins Institute of Medical Research, Centre for Medical Research, University of Western Australia, Nedlands WA, Australia (AF); Kinghorn Cancer Centre and Cancer Research Division, Garvan Institute of Medical Research, Darlinghurst NSW, Australia (AS); St Vincent's Clinical School, University of New South Wales, Darlinghurst NSW, Australia (AS, JSM, MED); Australian Centre for Nanomedicine, Randwick NSW, Australia (MK); Garvan Institute of Medical Research, Darlinghurst NSW, Australia (AS, JSM, MED); School of Women's & Children's Health, University of New South Wales, Randwick NSW, Australia (TL).

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https://academic.oup.com/jnci/article-lookup/doi/10.1093/jnc
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http://dx.doi.org/10.1093/jnci/dju113DOI Listing
July 2014

The impact of genomics on the future of medicine and health.

Med J Aust 2014 Jul;201(1):17-20

Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.

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http://dx.doi.org/10.5694/mja13.10920DOI Listing
July 2014

The rise of regulatory RNA.

Nat Rev Genet 2014 Jun 29;15(6):423-37. Epub 2014 Apr 29.

Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst, NSW 2010, Australia; the School of Biotechnology and Biomedical Sciences, and St. Vincent's Clinical School, University of New South Wales, Sydney, NSW 2052, Australia.

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http://dx.doi.org/10.1038/nrg3722DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314111PMC
June 2014

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.

Nat Protoc 2014 May 3;9(5):989-1009. Epub 2014 Apr 3.

Garvan Institute of Medical Research, Sydney, New South Wales, Australia.

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http://www.nature.com/articles/nprot.2014.058
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http://dx.doi.org/10.1038/nprot.2014.058DOI Listing
May 2014

The dark matter rises: the expanding world of regulatory RNAs.

Essays Biochem 2013 ;54:1-16

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1042/bse0540001DOI Listing
April 2014

Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver.

BMC Bioinformatics 2014 Mar 25;15:83. Epub 2014 Mar 25.

Chemical and Biochemical Engineering Department, Rutgers the State University of New Jersey, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1186/1471-2105-15-83DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3987685PMC
March 2014

Topology and dynamics of signaling networks: in search of transcriptional control of the inflammatory response.

Annu Rev Biomed Eng 2013 ;15:1-28

Chemical & Biochemical Engineering Department, Rutgers University, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1146/annurev-bioeng-071812-152425DOI Listing
February 2014

Branched-chain amino acid supplementation: impact on signaling and relevance to critical illness.

Wiley Interdiscip Rev Syst Biol Med 2013 Jul-Aug;5(4):449-460. Epub 2013 Mar 29.

Department of Biomedical Engineering, Rutgers, the State University of New Jersey, Piscataway, New Jersey.

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http://dx.doi.org/10.1002/wsbm.1219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482218PMC
January 2014

Probing the phenomics of noncoding RNA.

Authors:
John S Mattick

Elife 2013 Dec 31;2:e01968. Epub 2013 Dec 31.

John S Mattick is an eLife reviewing editor, and is at the Garvan Institute of Medical Research, Sydney, Australia and St Vincent's Clinical School and the School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia

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http://dx.doi.org/10.7554/eLife.01968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3874102PMC
December 2013

Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting.

Cell Rep 2013 Nov 31;5(3):839-48. Epub 2013 Oct 31.

Garvan Institute of Medical Research, Sydney NSW 2010, Australia; Institute for Molecular Bioscience, The University of Queensland, Brisbane QLD 4072, Australia.

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http://dx.doi.org/10.1016/j.celrep.2013.09.036DOI Listing
November 2013

Widespread purifying selection on RNA structure in mammals.

Nucleic Acids Res 2013 Sep 11;41(17):8220-36. Epub 2013 Jul 11.

RNA Biology and Plasticity Laboratory, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst, Sydney, NSW 2010 Australia, Genomics and Computational Biology Division, Institute for Molecular Bioscience, 306 Carmody Rd, University of Queensland, Brisbane, 4067 Australia, Department of Structural and Computational Biology; and Center for Integrative Bioinformatics Vienna (CIBIV), Max F. Perutz Laboratories (MFPL), University of Vienna, Medical University of Vienna, Dr. Bohr-Gasse 9, A-1030 Vienna, Austria, Bioinformatics Group, Department of Computer Science; and Interdisciplinary Center for Bioinformatics, University of Leipzig, Härtelstrasse 16-18, D-04107 Leipzig, Germany, Max Planck Institute for Mathematics in the Sciences, Inselstraße 22, D-04103 Leipzig, Germany, Center for Non-coding RNA in Technology and Health, Department of Basic Veterinary and Animal Sciences, Faculty of Life Sciences University of Copenhagen, Grønnegårdsvej 3, 1870 Frederiksberg C Denmark, Santa Fe Institute, 1399 Hyde Park Rd, Santa Fe, NM 87501, USA and St Vincent's Clinical School, University of New South Wales, Level 5, de Lacy, Victoria St, St Vincent's Hospital, Sydney, NSW 2010 Australia.

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http://dx.doi.org/10.1093/nar/gkt596DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3783177PMC
September 2013

Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci.

Bioinformatics 2013 Aug 5;29(15):1895-7. Epub 2013 Jun 5.

Division of Genomics and Computational Biology, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btt315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712220PMC
August 2013

A meta-analysis of the genomic and transcriptomic composition of complex life.

Cell Cycle 2013 Jul 6;12(13):2061-72. Epub 2013 Jun 6.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD Australia.

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http://dx.doi.org/10.4161/cc.25134DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3737309PMC
July 2013

Understanding the regulatory and transcriptional complexity of the genome through structure.

Genome Res 2013 Jul;23(7):1081-8

Garvan Institute of Medical Research, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1101/gr.156612.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3698501PMC
July 2013

MicroRNAs-140-5p/140-3p modulate Leydig cell numbers in the developing mouse testis.

Biol Reprod 2013 Jun 6;88(6):143. Epub 2013 Jun 6.

Division of Molecular Genetics and Development, Institute for Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1095/biolreprod.113.107607DOI Listing
June 2013

Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective.

Brief Funct Genomics 2013 May;12(3):254-78

The Gurdon Institute, University of Cambridge.

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http://dx.doi.org/10.1093/bfgp/elt016DOI Listing
May 2013

Structure and function of long noncoding RNAs in epigenetic regulation.

Nat Struct Mol Biol 2013 Mar;20(3):300-7

Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1038/nsmb.2480DOI Listing
March 2013

Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage.

RNA 2013 Feb 21;19(2):257-70. Epub 2012 Dec 21.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1261/rna.036202.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3543087PMC
February 2013

The lethal toxin from Australian funnel-web spiders is encoded by an intronless gene.

PLoS One 2012 22;7(8):e43699. Epub 2012 Aug 22.

Institute for Molecular Bioscience, The University of Queensland, St Lucia, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0043699PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3425536PMC
January 2013

Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.

BMC Genomics 2013 Jan 16;14:15. Epub 2013 Jan 16.

Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, Brisbane, Qld 4072, Australia.

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http://dx.doi.org/10.1186/1471-2164-14-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610266PMC
January 2013

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.

Bioinformatics 2012 Dec 7;28(23):3042-50. Epub 2012 Oct 7.

Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1093/bioinformatics/bts582DOI Listing
December 2012

Long-term gene expression profile dynamics following cecal ligation and puncture in the rat.

J Surg Res 2012 Nov 16;178(1):431-42. Epub 2012 Apr 16.

Department of Chemical and Biochemical Engineering, Rutgers, State University of New Jersey, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1016/j.jss.2012.03.052DOI Listing
November 2012

The role of regulatory RNA in cognitive evolution.

Trends Cogn Sci 2012 Oct 30;16(10):497-503. Epub 2012 Aug 30.

Institute for Molecular Bioscience, The University of Queensland, Brisbane Queensland, 4072, Australia.

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http://dx.doi.org/10.1016/j.tics.2012.08.007DOI Listing
October 2012

Rocking the foundations of molecular genetics.

Authors:
John S Mattick

Proc Natl Acad Sci U S A 2012 Oct 27;109(41):16400-1. Epub 2012 Sep 27.

Garvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia.

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http://dx.doi.org/10.1073/pnas.1214129109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3478605PMC
October 2012

Long noncoding RNAs in cardiac development and pathophysiology.

Circ Res 2012 Oct;111(10):1349-62

Victor Chang Cardiac Research Institute, Darlinghurst, New South Wales, Australia.

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http://dx.doi.org/10.1161/CIRCRESAHA.112.268953DOI Listing
October 2012

Dynamics of hepatic gene expression profile in a rat cecal ligation and puncture model.

J Surg Res 2012 Aug 15;176(2):583-600. Epub 2011 Dec 15.

Chemical and Biochemical Engineering Department, Rutgers University, Piscataway, New Jersey 08854, USA.

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http://dx.doi.org/10.1016/j.jss.2011.11.1031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368040PMC
August 2012

Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data.

Genome Res 2012 Jul 1;22(7):1372-81. Epub 2012 May 1.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, 4072 QLD, Australia.

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http://dx.doi.org/10.1101/gr.130237.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3396377PMC
July 2012

Potential in vivo roles of nucleic acid triple-helices.

RNA Biol 2011 May-Jun;8(3):427-39. Epub 2011 May 1.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218511PMC
http://dx.doi.org/10.4161/rna.8.3.14999DOI Listing
May 2012

Genome-wide analysis of long noncoding RNA stability.

Genome Res 2012 May 9;22(5):885-98. Epub 2012 Mar 9.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia;

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http://genome.cshlp.org/cgi/doi/10.1101/gr.131037.111
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http://dx.doi.org/10.1101/gr.131037.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337434PMC
May 2012

RNA driving the epigenetic bus.

Authors:
John S Mattick

EMBO J 2012 Feb 1;31(3):515-6. Epub 2012 Feb 1.

Institute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.1038/emboj.2011.479DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273387PMC
February 2012

Expression of transposable elements in neural tissues during Xenopus development.

PLoS One 2011 26;6(7):e22569. Epub 2011 Jul 26.

Center for Aging and Regeneration and Millennium Nucleus in Regenerative Biology, Pontificia Universidad Católica de Chile, Alameda, Santiago, Chile.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0022569PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144230PMC
December 2011

Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins.

RNA 2011 Dec 25;17(12):2085-93. Epub 2011 Oct 25.

Western Australian Institute for Medical Research and Centre for Medical Research, The University of Western Australia, Perth, Western Australia, Australia.

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http://rnajournal.cshlp.org/cgi/doi/10.1261/rna.029405.111
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http://dx.doi.org/10.1261/rna.029405.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222122PMC
December 2011

The evolution of RNAs with multiple functions.

Biochimie 2011 Nov 23;93(11):2013-8. Epub 2011 Jul 23.

Institute for Molecular Bioscience, University of Queensland, 306 Carmody Road, St Lucia, QLD 4072, Australia.

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http://dx.doi.org/10.1016/j.biochi.2011.07.018DOI Listing
November 2011

The double life of RNA.

Authors:
John S Mattick

Biochimie 2011 Nov;93(11):viii-ix

Institute for Molecular Bioscience, University of Queensland, St Lucia QLD 4072, Australia.

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http://dx.doi.org/10.1016/S0300-9084(11)00355-5DOI Listing
November 2011

Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Nat Biotechnol 2011 Nov 13;30(1):99-104. Epub 2011 Nov 13.

Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1038/nbt.2024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3710462PMC
November 2011

RNA lights up.

Nat Biotechnol 2011 Oct 13;29(10):883-4. Epub 2011 Oct 13.

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http://dx.doi.org/10.1038/nbt.2003DOI Listing
October 2011

Somatic retrotransposition alters the genetic landscape of the human brain.

Nature 2011 Oct 30;479(7374):534-7. Epub 2011 Oct 30.

Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh EH25 9RG, UK.

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http://dx.doi.org/10.1038/nature10531DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224101PMC
October 2011

RNA processing in human mitochondria.

Cell Cycle 2011 Sep 1;10(17):2904-16. Epub 2011 Sep 1.

Western Australian Institute for Medical Research and Centre for Medical Research, The University of Western Australia, Perth, WA Australia.

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http://dx.doi.org/10.4161/cc.10.17.17060DOI Listing
September 2011

The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization.

Epigenetics Chromatin 2011 Aug 3;4:13. Epub 2011 Aug 3.

Department of Molecular and Experimental Medicine, The Kellogg School of Science and Technology, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/1756-8935-4-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170176PMC
August 2011

MicroRNA regulation of neural plasticity and memory.

Neurobiol Learn Mem 2011 Jul 18;96(1):89-94. Epub 2011 Apr 18.

Queensland Brain Institute, The University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1016/j.nlm.2011.04.004DOI Listing
July 2011

MicroRNAs in β-cell biology, insulin resistance, diabetes and its complications.

Diabetes 2011 Jul;60(7):1825-31

Institute for Molecular Bioscience, University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.2337/db11-0171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121441PMC
July 2011

Long noncoding RNAs in cell biology.

Semin Cell Dev Biol 2011 Jun 20;22(4):366-76. Epub 2011 Jan 20.

Institute for Molecular Bioscience, University of Queensland, 306 Carmody Road, St Lucia, QLD 4072, Australia.

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http://dx.doi.org/10.1016/j.semcdb.2011.01.001DOI Listing
June 2011

The central role of RNA in human development and cognition.

Authors:
John S Mattick

FEBS Lett 2011 Jun 6;585(11):1600-16. Epub 2011 May 6.

Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1016/j.febslet.2011.05.001DOI Listing
June 2011

The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion.

Cancer Res 2011 Jun 10;71(11):3852-62. Epub 2011 May 10.

Sanford Burnham Medical Research Institute, Orlando, Florida 32827, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-4460DOI Listing
June 2011

Long noncoding RNAs in cell and developmental biology.

Authors:
John S Mattick

Semin Cell Dev Biol 2011 Jun 20;22(4):327. Epub 2011 May 20.

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http://linkinghub.elsevier.com/retrieve/pii/S108495211100077
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http://dx.doi.org/10.1016/j.semcdb.2011.05.002DOI Listing
June 2011

MicroRNAs in the shoot apical meristem of soybean.

J Exp Bot 2011 May 19;62(8):2495-506. Epub 2011 Apr 19.

ARC Centre of Excellence for Integrative Legume Research, Faculty of Land and Food Resources, The University of Melbourne, Parkville, Victoria, 3010, Australia.

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http://dx.doi.org/10.1093/jxb/erq437DOI Listing
May 2011

Expression of distinct RNAs from 3' untranslated regions.

Nucleic Acids Res 2011 Mar 12;39(6):2393-403. Epub 2010 Nov 12.

Institute for Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1093/nar/gkq1158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3064787PMC
March 2011

Genome-sequencing anniversary. The genomic foundation is shifting.

Authors:
John S Mattick

Science 2011 Feb;331(6019):874

Institute for Molecular Bioscience, University of Queensland, St. Lucia, Queensland, Australia.

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http://dx.doi.org/10.1126/science.1203703DOI Listing
February 2011

lncRNAdb: a reference database for long noncoding RNAs.

Nucleic Acids Res 2011 Jan 25;39(Database issue):D146-51. Epub 2010 Nov 25.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1093/nar/gkq1138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013714PMC
January 2011

The central role of RNA in the genetic programming of complex organisms.

Authors:
John S Mattick

An Acad Bras Cienc 2010 Dec;82(4):933-9

Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia.

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December 2010

Stringent programming of DNA methylation in humans.

Twin Res Hum Genet 2010 Oct;13(5):405-11

School of Chemistry and Molecular Biosciences, The University of Queensland, Australia.

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http://dx.doi.org/10.1375/twin.13.5.405DOI Listing
October 2010

Linc-ing Long noncoding RNAs and enhancer function.

Authors:
John S Mattick

Dev Cell 2010 Oct;19(4):485-6

Institute for Molecular Bioscience, University of Queensland, St. Lucia QLD 4072, Australia.

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http://dx.doi.org/10.1016/j.devcel.2010.10.003DOI Listing
October 2010