Publications by authors named "John R Yates"

100Publications

Temporal Quantitative Profiling of Newly Synthesized Proteins during Aβ Accumulation.

J Proteome Res 2020 Nov 4. Epub 2020 Nov 4.

Department of Chemical Physiology and Molecular and Cellular Neurobiology, The Scripps Research Institute, La Jolla, California 92037, United States.

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http://dx.doi.org/10.1021/acs.jproteome.0c00645DOI Listing
November 2020

Visualization of the HIV-1 Env glycan shield across scales.

Proc Natl Acad Sci U S A 2020 Nov 22;117(45):28014-28025. Epub 2020 Oct 22.

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037;

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http://dx.doi.org/10.1073/pnas.2000260117DOI Listing
November 2020

PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies.

Anal Chem 2020 11 20;92(21):14466-14475. Epub 2020 Oct 20.

Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States.

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http://dx.doi.org/10.1021/acs.analchem.0c02513DOI Listing
November 2020

Intracellular amyloid toxicity induces oxytosis/ferroptosis regulated cell death.

Cell Death Dis 2020 Oct 6;11(10):828. Epub 2020 Oct 6.

Cellular Neurobiology Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Rd., La Jolla, CA, 92037, USA.

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http://dx.doi.org/10.1038/s41419-020-03020-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7538552PMC
October 2020

Quantitative analysis of global protein stability rates in tissues.

Sci Rep 2020 09 29;10(1):15983. Epub 2020 Sep 29.

Department of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.

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http://dx.doi.org/10.1038/s41598-020-72410-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7524747PMC
September 2020

"To Infinity...and beyond":† Looking Past Model Systems.

Authors:
John R Yates

J Proteome Res 2020 Sep 18;19(9):3593-3594. Epub 2020 Aug 18.

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http://dx.doi.org/10.1021/acs.jproteome.0c00607DOI Listing
September 2020

Changes in porcine cauda epididymal fluid proteome by disrupting the HPT axis: Unveiling potential mechanisms of male infertility.

Mol Reprod Dev 2020 09 4;87(9):952-965. Epub 2020 Aug 4.

Laboratório de Biotecnologia, Universidade do Vale do Taquari-Univates, Lajeado, Rio Grande do Sul, Brazil.

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http://dx.doi.org/10.1002/mrd.23408DOI Listing
September 2020

Expression of Amyloidogenic Transthyretin Drives Hepatic Proteostasis Remodeling in an Induced Pluripotent Stem Cell Model of Systemic Amyloid Disease.

Stem Cell Reports 2020 08 30;15(2):515-528. Epub 2020 Jul 30.

Center for Regenerative Medicine of Boston University and Boston Medical Center, 670 Albany Street, 2nd Floor, Boston, MA 02118, USA; Section of Hematology and Oncology, Department of Medicine, Boston University School of Medicine, Boston, MA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2020.07.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7419739PMC
August 2020

Proteomics Profiling of KAIMRC1 in Comparison to MDA-MB231 and MCF-7.

Int J Mol Sci 2020 Jun 18;21(12). Epub 2020 Jun 18.

Medical Research Core Facility and Platforms (MRCFP), King Abdullah International Medical Research Center/King Saud bin Abdulaziz University for Health Sciences (KSAU-HS), King Abdulaziz Medical City (KAMC), NGHA, Riyadh 11426, Saudi Arabia.

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http://dx.doi.org/10.3390/ijms21124328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7352455PMC
June 2020

Impact of the Identification Strategy on the Reproducibility of the DDA and DIA Results.

J Proteome Res 2020 08 19;19(8):3153-3161. Epub 2020 Jun 19.

Department of Molecular Medicine & Neurobiology, The Scripps Research Institute, La Jolla, California 92037, United States.

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http://dx.doi.org/10.1021/acs.jproteome.0c00153DOI Listing
August 2020

Effects on Postoperative Gastrointestinal Motility After Neuromuscular Blockade Reversal With Sugammadex Versus Neostigmine/Glycopyrrolate in Colorectal Surgery Patients.

Ann Pharmacother 2020 Dec 29;54(12):1165-1174. Epub 2020 May 29.

The University of Tennessee Medical Center, Knoxville, TN, USA.

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http://dx.doi.org/10.1177/1060028020929061DOI Listing
December 2020

Unbiased Identification of trans Regulators of ADAR and A-to-I RNA Editing.

Cell Rep 2020 05;31(7):107656

Department of Genetics, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2020.107656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7306178PMC
May 2020

HIV-1 Envelope and MPER Antibody Structures in Lipid Assemblies.

Cell Rep 2020 04;31(4):107583

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, CA 92037, USA; Center for HIV/AIDS Vaccine Development, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2020.107583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7196886PMC
April 2020

The Journey Is the Reward, a Taoist Proverb: John B. Fenn Award for Distinguished Contribution in Mass Spectrometry Lecture.

Authors:
John R Yates

J Am Soc Mass Spectrom 2020 Jul 7;31(7):1327-1336. Epub 2020 May 7.

Departments of Molecular Medicine and Neurobiology, The Scripps Research Institute, 10550 North Torrey Pines Road, SR302B, LaJolla, California 92037, United States.

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http://dx.doi.org/10.1021/jasms.0c00073DOI Listing
July 2020

Amblyomma americanum serpin 41 (AAS41) inhibits inflammation by targeting chymase and chymotrypsin.

Int J Biol Macromol 2020 Aug 19;156:1007-1021. Epub 2020 Apr 19.

Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2020.04.088DOI Listing
August 2020

Human Influenza Virus Hemagglutinins Contain Conserved Oligomannose N-Linked Glycans Allowing Potent Neutralization by Lectins.

Cell Host Microbe 2020 05 15;27(5):725-735.e5. Epub 2020 Apr 15.

Department of Molecular Medicine, Scripps Research, La Jolla, CA 92037, USA; Department of Immunology & Microbiology, Scripps Research, La Jolla, CA 92037, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2020.03.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7158820PMC
May 2020

Proteomics of Select Neglected Tropical Diseases.

Annu Rev Anal Chem (Palo Alto Calif) 2020 06 28;13(1):315-336. Epub 2020 Feb 28.

Department of Molecular Medicine and Neurobiology, The Scripps Research Institute, La Jolla, California 92037, USA; email:

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http://dx.doi.org/10.1146/annurev-anchem-091619-093003DOI Listing
June 2020