John Postlethwait

John Postlethwait

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John Postlethwait

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Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development.

Dev Biol 2019 Aug 5. Epub 2019 Aug 5.

Institute of Neuroscience, 1254 University of Oregon, Eugene, OR, 97403, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2019.08.002DOI Listing
August 2019

Expression Signatures of Cisplatin- and Trametinib-Treated Early-Stage Medaka Melanomas.

G3 (Bethesda) 2019 07 9;9(7):2267-2276. Epub 2019 Jul 9.

Physiological Chemistry, Biocenter, University of Wuerzburg, 97074 Wuerzburg, Germany

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http://dx.doi.org/10.1534/g3.119.400051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643878PMC
July 2019

Evolutionary Origin and Nomenclature of Vertebrate -Family Genes.

Zebrafish 2019 Jul 11. Epub 2019 Jul 11.

2 Stowers Institute for Medical Research, Kansas City, Missouri.

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http://dx.doi.org/10.1089/zeb.2019.1760DOI Listing
July 2019

Eye Degeneration and Loss of otx5b Expression in the Cavefish Sinocyclocheilus tileihornes.

J Mol Evol 2019 Jul 22. Epub 2019 Jul 22.

Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.

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http://dx.doi.org/10.1007/s00239-019-09901-8DOI Listing
July 2019

Neuroendocrinology of reproduction: Is gonadotropin-releasing hormone (GnRH) dispensable?

Front Neuroendocrinol 2019 04 22;53:100738. Epub 2019 Feb 22.

Centro Interdisciplinario de Neurociencia de Valparaiso (CINV), Instituto de Neurociencia, Universidad de Valparaiso, Avenida Gran Bretaña 1111, Valparaiso, Chile.

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http://dx.doi.org/10.1016/j.yfrne.2019.02.002DOI Listing
April 2019

Intergeneric hybrids inform reproductive isolating barriers in the Antarctic icefish radiation.

Sci Rep 2019 Apr 12;9(1):5989. Epub 2019 Apr 12.

Department of Marine and Environmental Sciences, Marine Science Center, Northeastern University, Nahant, MA, 01908, USA.

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http://www.nature.com/articles/s41598-019-42354-z
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http://dx.doi.org/10.1038/s41598-019-42354-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461676PMC
April 2019

Female Sex Development and Reproductive Duct Formation Depend on Wnt4a in Zebrafish.

Genetics 2019 01 16;211(1):219-233. Epub 2018 Nov 16.

Department of Molecular and Cellular Biology, University of California, Davis, California 95616

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http://www.genetics.org/lookup/doi/10.1534/genetics.118.3016
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http://dx.doi.org/10.1534/genetics.118.301620DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6325708PMC
January 2019

Adaptation of Proteins to the Cold in Antarctic Fish: A Role for Methionine?

Genome Biol Evol 2019 01 1;11(1):220-231. Epub 2019 Jan 1.

British Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom.

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http://dx.doi.org/10.1093/gbe/evy262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336007PMC
January 2019

Application of the Transcriptional Disease Signature (TDSs) to Screen Melanoma-Effective Compounds in a Small Fish Model.

Sci Rep 2019 Jan 24;9(1):530. Epub 2019 Jan 24.

Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, 419 Centennial Hall, Texas State University, San Marcos, TX, USA.

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http://dx.doi.org/10.1038/s41598-018-36656-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345854PMC
January 2019

Brain of the blind: transcriptomics of the golden-line cavefish brain.

Curr Zool 2018 Dec 12;64(6):765-773. Epub 2018 Jan 12.

Institute of Neuroscience, University of Oregon, Eugene, OR, USA.

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https://academic.oup.com/cz/advance-article/doi/10.1093/cz/z
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http://dx.doi.org/10.1093/cz/zoy005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6280103PMC
December 2018

Gene expression variation and parental allele inheritance in a Xiphophorus interspecies hybridization model.

PLoS Genet 2018 12 26;14(12):e1007875. Epub 2018 Dec 26.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324826PMC
December 2018

Effect of Genetic Diagnosis on Patients with Previously Undiagnosed Disease.

N Engl J Med 2018 11 10;379(22):2131-2139. Epub 2018 Oct 10.

From Harvard Medical School (K.S., C.E., I.S.K., J.L., A.T.M., D.A.S.), Brigham and Women's Hospital (J.L.), and Massachusetts General Hospital (D.A.S.) - all in Boston; the National Institutes of Health Clinical Center (D.R.A., W.A.G., J.J.M., C.J.T.) and the National Human Genome Research Institute (A.L.W.), Bethesda, and the University of Maryland, College Park (A.M.C.-J., B.K., L.P.) - all in Maryland; Baylor College of Medicine, Houston (C.A.B., H.J.B., C.M.E., B.H.L., X.L., M.F.W., S.Y.); Stanford University, Stanford (J.A.B., C.R., M.T.W., E.A.A.), and the University of California, Los Angeles, Los Angeles (S.F.N., C.G.S.P.) - both in California; Vanderbilt University, Nashville (R.H., J.A.P.); HudsonAlpha Institute for Biotechnology, Huntsville, AL (H.J.J., E.A.W.); Oregon Health and Science University, Portland (D.M.K.); the Pacific Northwest National Laboratory, Richland, WA (T.O.M.); the University of Oregon, Eugene (J.H.P., M.W.); and Duke University, Durham, NC (V.S., N.M.W.).

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http://www.nejm.org/doi/10.1056/NEJMoa1714458
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http://dx.doi.org/10.1056/NEJMoa1714458DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481166PMC
November 2018

Comparison of Xiphophorus and human melanoma transcriptomes reveals conserved pathway interactions.

Pigment Cell Melanoma Res 2018 07 29;31(4):496-508. Epub 2018 Jan 29.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX, USA.

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http://dx.doi.org/10.1111/pcmr.12686DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6013346PMC
July 2018

Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'.

Nat Genet 2018 07;50(7):910-911

Institute of Neuroscience, University of Oregon, Eugene, OR, USA.

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http://dx.doi.org/10.1038/s41588-018-0163-3DOI Listing
July 2018

Expression signatures of early-stage and advanced medaka melanomas.

Comp Biochem Physiol C Toxicol Pharmacol 2018 Jun 21;208:20-28. Epub 2017 Nov 21.

Physiological Chemistry, Biocenter, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany; Comprehensive Cancer Center Mainfranken, University of Wuerzburg, Am Hubland, 97074 Wuerzburg, Germany; Hagler Institute for Advanced Study and Department of Biology, Texas A&M University, College Station, TX 77843, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cbpc.2017.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936653PMC
June 2018

Endocrine disruption and differential gene expression in sentinel fish on St. Lawrence Island, Alaska: Health implications for indigenous residents.

Environ Pollut 2018 Mar 21;234:279-287. Epub 2017 Dec 21.

Department of Biological Sciences & Center for Bioengineering Innovation, Northern Arizona University, 617 S. Beaver St., PO Box 5640, Flagstaff, AZ 86011, USA.

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http://dx.doi.org/10.1016/j.envpol.2017.11.054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5809177PMC
March 2018

Manganese accumulates in the brain of northern quolls (Dasyurus hallucatus) living near an active mine.

Environ Pollut 2018 Feb 5;233:377-386. Epub 2017 Nov 5.

School of Biological Sciences, The University of Queensland, St Lucia, QLD 4072, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.envpol.2017.10.088DOI Listing
February 2018

The Spotted Gar: Genomic Journeys into a Lost World.

J Exp Zool B Mol Dev Evol 2017 11;328(7):593-595

Institute of Neuroscience, University of Oregon, Eugene, Oregon, USA.

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http://doi.wiley.com/10.1002/jez.b.22775
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http://dx.doi.org/10.1002/jez.b.22775DOI Listing
November 2017

Molecular genetic analysis of the melanoma regulatory locus in Xiphophorus interspecies hybrids.

Mol Carcinog 2017 08 13;56(8):1935-1944. Epub 2017 Apr 13.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, Texas.

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http://dx.doi.org/10.1002/mc.22651DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5767473PMC
August 2017

The zebrafish kidney mutant zeppelin reveals that brca2/fancd1 is essential for pronephros development.

Dev Biol 2017 08 1;428(1):148-163. Epub 2017 Jun 1.

Department of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2017.05.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5571230PMC
August 2017

Perchlorate Exposure Reduces Primordial Germ Cell Number in Female Threespine Stickleback.

PLoS One 2016 6;11(7):e0157792. Epub 2016 Jul 6.

Institute of Ecology and Evolution, Department of Biology, University of Oregon, Eugene, Oregon, 97403, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0157792PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4934864PMC
July 2017

Cold Fusion: Massive Karyotype Evolution in the Antarctic Bullhead Notothen .

G3 (Bethesda) 2017 07 5;7(7):2195-2207. Epub 2017 Jul 5.

Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403

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http://g3journal.org/lookup/doi/10.1534/g3.117.040063
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http://dx.doi.org/10.1534/g3.117.040063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5498148PMC
July 2017

Exogenous iodide ameliorates perchlorate-induced thyroid phenotypes in threespine stickleback.

Gen Comp Endocrinol 2017 03 1;243:60-69. Epub 2016 Nov 1.

Center for Bioengineering Innovation & Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygcen.2016.10.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5318228PMC
March 2017

Vertebrate sex-determining genes play musical chairs.

C R Biol 2016 Jul-Aug;339(7-8):258-62. Epub 2016 Jun 10.

Inra, Fish Physiology and Genomics Laboratory, 35042 Rennes, France. Electronic address:

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http://dx.doi.org/10.1016/j.crvi.2016.05.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5393452PMC
February 2017

Lipid droplet biology and evolution illuminated by the characterization of a novel perilipin in teleost fish.

Elife 2017 02 28;6. Epub 2017 Feb 28.

Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, United States.

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http://dx.doi.org/10.7554/eLife.21771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5342826PMC
February 2017

Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish.

Mar Genomics 2016 Dec 14;30:27-34. Epub 2016 May 14.

Institute of Neuroscience, University of Oregon, Eugene, OR, 97403, USA. Electronic address:

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http://dx.doi.org/10.1016/j.margen.2016.04.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5108692PMC
December 2016

Embryogenesis and early skeletogenesis in the antarctic bullhead notothen, Notothenia coriiceps.

Dev Dyn 2016 11 29;245(11):1066-1080. Epub 2016 Aug 29.

Biodôme de Montréal, Division des collections vivantes et recherche, Montréal, Quebec, Canada.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065385PMC
http://dx.doi.org/10.1002/dvdy.24437DOI Listing
November 2016

Variations on a theme: Genomics of sex determination in the cichlid fish Astatotilapia burtoni.

BMC Genomics 2016 11 7;17(1):883. Epub 2016 Nov 7.

Zoological Institute, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland.

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http://dx.doi.org/10.1186/s12864-016-3178-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100337PMC
November 2016

Characterization and Evolution of the Spotted Gar Retina.

J Exp Zool B Mol Dev Evol 2016 11 9;326(7):403-421. Epub 2016 Nov 9.

Department of Biological Sciences, University of Idaho, Moscow, Idaho.

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http://dx.doi.org/10.1002/jez.b.22710DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5177532PMC
November 2016

Pharyngeal morphogenesis requires fras1-itga8-dependent epithelial-mesenchymal interaction.

Dev Biol 2016 08 2;416(1):136-148. Epub 2016 Jun 2.

Institute of Neuroscience, 1254 University of Oregon, Eugene, OR 97403, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2016.05.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4967372PMC
August 2016

Whole Body Melanoma Transcriptome Response in Medaka.

PLoS One 2015 29;10(12):e0143057. Epub 2015 Dec 29.

McDonnell Genome Institute at Washington University, 4444 Forest Park Blvd., St Louis, MO, 63108, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143057PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4699850PMC
July 2016

Ancient origin of lubricated joints in bony vertebrates.

Elife 2016 07 19;5. Epub 2016 Jul 19.

Department of Stem Cell Biology and Regenerative Medicine, Keck School of Medicine of University of Southern California, Los Angeles, United States.

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http://dx.doi.org/10.7554/eLife.16415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4951194PMC
July 2016

MicroRNA Profiling during Craniofacial Development: Potential Roles for Mir23b and Mir133b.

Front Physiol 2016 14;7:281. Epub 2016 Jul 14.

Department of Craniofacial Biology, School of Dental Medicine, University of Colorado Anschutz Medical Campus Aurora, CO, USA.

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http://dx.doi.org/10.3389/fphys.2016.00281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943961PMC
July 2016

Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models.

BMC Genomics 2016 05 17;17:357. Epub 2016 May 17.

Physiological Chemistry I, Biocenter, University of Würzburg, Am Hubland, 97074, Würzburg, Germany.

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http://dx.doi.org/10.1186/s12864-016-2697-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4869193PMC
May 2016

X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

BMC Genomics 2016 Jan 7;17:37. Epub 2016 Jan 7.

The Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, 419 Centennial Hall, 601 University Drive, San Marcos, TX, 78666, USA.

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http://dx.doi.org/10.1186/s12864-015-2361-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4705583PMC
January 2016

Developmental timing of perchlorate exposure alters threespine stickleback dermal bone.

Gen Comp Endocrinol 2015 Aug 6;219:36-44. Epub 2015 Mar 6.

Department of Veterinary Medicine, University of Alaska Fairbanks, P.O. Box 757750, Fairbanks, AK 99775-7750, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygcen.2015.02.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4508210PMC
August 2015

Developmental timing of sodium perchlorate exposure alters angiogenesis, thyroid follicle proliferation and sexual maturation in stickleback.

Gen Comp Endocrinol 2015 Aug 9;219:24-35. Epub 2015 Apr 9.

Department of Veterinary Medicine, University of Alaska Fairbanks, P.O. Box 757750, Fairbanks, AK 99775-7750, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygcen.2015.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4508251PMC
August 2015

Two Zebrafish hsd3b Genes Are Distinct in Function, Expression, and Evolution.

Endocrinology 2015 Aug 14;156(8):2854-62. Epub 2015 May 14.

Institute of Genome Sciences (J.-C.L., P.-H.H., B.-c.C.), National Yang-Ming University, Taipei, 112 Taiwan; Institute of Molecular Biology (J.-C.L., S.H., P.-H.H., H.-J.H., B.-c.C.), Academia Sinica, Taipei, 115 Taiwan; and Institute of Neuroscience (J.H.P.), University of Oregon, Eugene, Oregon 97403.

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http://dx.doi.org/10.1210/en.2014-1584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511139PMC
August 2015

"Wrecks of Ancient Life": Genetic Variants Vetted by Natural Selection.

Genetics 2015 Jul;200(3):675-8

Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403.

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http://dx.doi.org/10.1534/genetics.115.178442DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4512532PMC
July 2015

A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

J Exp Zool B Mol Dev Evol 2015 Jun 11;324(4):316-41. Epub 2014 Aug 11.

Institute of Neuroscience, University of Oregon, Eugene, Oregon.

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http://doi.wiley.com/10.1002/jez.b.22589
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http://dx.doi.org/10.1002/jez.b.22589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4324401PMC
June 2015

Phylogeny of zebrafish, a "model species," within Danio, a "model genus".

Mol Biol Evol 2015 Mar 20;32(3):635-52. Epub 2014 Nov 20.

Institute of Neuroscience, University of Oregon

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http://dx.doi.org/10.1093/molbev/msu325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4327152PMC
March 2015

Evolution of the miR199-214 cluster and vertebrate skeletal development.

RNA Biol 2014 20;11(4):281-94. Epub 2014 Feb 20.

Institute of Neuroscience; University of Oregon; Eugene, OR USA.

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http://dx.doi.org/10.4161/rna.28141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4075512PMC
January 2015

Deep conservation of wrist and digit enhancers in fish.

Proc Natl Acad Sci U S A 2015 Jan 22;112(3):803-8. Epub 2014 Dec 22.

Department of Organismal Biology and Anatomy, The University of Chicago, Chicago, IL 60637;

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http://dx.doi.org/10.1073/pnas.1420208112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4311833PMC
January 2015

Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes.

Sci Rep 2015 Jan 29;5:8113. Epub 2015 Jan 29.

1] Center for Circadian Clocks, Soochow University, Suzhou 215123, Jiangsu, China [2] School of Biology &Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, Jiangsu, China.

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http://dx.doi.org/10.1038/srep08113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4558521PMC
January 2015

Expanding the annotation of zebrafish microRNAs based on small RNA sequencing.

Gene 2014 Aug 15;546(2):386-9. Epub 2014 May 15.

Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2014.05.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4130647PMC
August 2014

Temporally and spatially restricted gene expression profiling.

Curr Genomics 2014 Aug;15(4):278-92

Institute of Neuroscience, 1254-University of Oregon, 1425 E. 13th Avenue, Eugene, OR-97403, USA.

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http://dx.doi.org/10.2174/1389202915666140602230106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4133951PMC
August 2014

Retinoic acid metabolic genes, meiosis, and gonadal sex differentiation in zebrafish.

PLoS One 2013 10;8(9):e73951. Epub 2013 Sep 10.

Institute of Neuroscience, University of Oregon, Eugene, Oregon, United States of America ; Departament de Genètica, Universitat de Barcelona, Barcelona, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0073951PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769385PMC
June 2014

Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.

Comp Biochem Physiol C Toxicol Pharmacol 2014 Jun 30;163:24-36. Epub 2014 Jan 30.

Institute of Neuroscience, University of Oregon, Eugene, 97403-1254 OR, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15320456140000
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http://dx.doi.org/10.1016/j.cbpc.2014.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4032612PMC
June 2014

Hoxb1b controls oriented cell division, cell shape and microtubule dynamics in neural tube morphogenesis.

Development 2014 Feb;141(3):639-49

Centre for Organismal Studies (COS), University of Heidelberg, Im Neuenheimer Feld 329, 69120 Heidelberg, Germany.

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http://dx.doi.org/10.1242/dev.098731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3899817PMC
February 2014

EML1 (CNG-modulin) controls light sensitivity in darkness and under continuous illumination in zebrafish retinal cone photoreceptors.

J Neurosci 2013 Nov;33(45):17763-76

Departments of Ophthalmology and Physiology, School of Medicine, University of California, San Francisco, San Francisco, California 94143, Albert Eye Research Institute, Duke University Medical Center, Durham, North Carolina 27710, and Department of Biology, University of Oregon, Eugene, Oregon 97403.

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http://dx.doi.org/10.1523/JNEUROSCI.2659-13.2013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3818550PMC
November 2013

The zebrafish reference genome sequence and its relationship to the human genome.

Authors:
Kerstin Howe Matthew D Clark Carlos F Torroja James Torrance Camille Berthelot Matthieu Muffato John E Collins Sean Humphray Karen McLaren Lucy Matthews Stuart McLaren Ian Sealy Mario Caccamo Carol Churcher Carol Scott Jeffrey C Barrett Romke Koch Gerd-Jörg Rauch Simon White William Chow Britt Kilian Leonor T Quintais José A Guerra-Assunção Yi Zhou Yong Gu Jennifer Yen Jan-Hinnerk Vogel Tina Eyre Seth Redmond Ruby Banerjee Jianxiang Chi Beiyuan Fu Elizabeth Langley Sean F Maguire Gavin K Laird David Lloyd Emma Kenyon Sarah Donaldson Harminder Sehra Jeff Almeida-King Jane Loveland Stephen Trevanion Matt Jones Mike Quail Dave Willey Adrienne Hunt John Burton Sarah Sims Kirsten McLay Bob Plumb Joy Davis Chris Clee Karen Oliver Richard Clark Clare Riddle David Elliot David Eliott Glen Threadgold Glenn Harden Darren Ware Sharmin Begum Beverley Mortimore Beverly Mortimer Giselle Kerry Paul Heath Benjamin Phillimore Alan Tracey Nicole Corby Matthew Dunn Christopher Johnson Jonathan Wood Susan Clark Sarah Pelan Guy Griffiths Michelle Smith Rebecca Glithero Philip Howden Nicholas Barker Christine Lloyd Christopher Stevens Joanna Harley Karen Holt Georgios Panagiotidis Jamieson Lovell Helen Beasley Carl Henderson Daria Gordon Katherine Auger Deborah Wright Joanna Collins Claire Raisen Lauren Dyer Kenric Leung Lauren Robertson Kirsty Ambridge Daniel Leongamornlert Sarah McGuire Ruth Gilderthorp Coline Griffiths Deepa Manthravadi Sarah Nichol Gary Barker Siobhan Whitehead Michael Kay Jacqueline Brown Clare Murnane Emma Gray Matthew Humphries Neil Sycamore Darren Barker David Saunders Justene Wallis Anne Babbage Sian Hammond Maryam Mashreghi-Mohammadi Lucy Barr Sancha Martin Paul Wray Andrew Ellington Nicholas Matthews Matthew Ellwood Rebecca Woodmansey Graham Clark James D Cooper James Cooper Anthony Tromans Darren Grafham Carl Skuce Richard Pandian Robert Andrews Elliot Harrison Andrew Kimberley Jane Garnett Nigel Fosker Rebekah Hall Patrick Garner Daniel Kelly Christine Bird Sophie Palmer Ines Gehring Andrea Berger Christopher M Dooley Zübeyde Ersan-Ürün Cigdem Eser Horst Geiger Maria Geisler Lena Karotki Anette Kirn Judith Konantz Martina Konantz Martina Oberländer Silke Rudolph-Geiger Mathias Teucke Christa Lanz Günter Raddatz Kazutoyo Osoegawa Baoli Zhu Amanda Rapp Sara Widaa Cordelia Langford Fengtang Yang Stephan C Schuster Nigel P Carter Jennifer Harrow Zemin Ning Javier Herrero Steve M J Searle Anton Enright Robert Geisler Ronald H A Plasterk Charles Lee Monte Westerfield Pieter J de Jong Leonard I Zon John H Postlethwait Christiane Nüsslein-Volhard Tim J P Hubbard Hugues Roest Crollius Jane Rogers Derek L Stemple

Nature 2013 Apr 17;496(7446):498-503. Epub 2013 Apr 17.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature12111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703927PMC
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The African coelacanth genome provides insights into tetrapod evolution.

Nature 2013 Apr;496(7445):311-6

Molecular Genetics Program, Benaroya Research Institute, Seattle, Washington 98101, USA.

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http://dx.doi.org/10.1038/nature12027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633110PMC
April 2013

Differentially-expressed genes identified in cavefish endemic to China.

Curr Zool 2013 Apr;59(2):170-174

Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868444PMC
http://dx.doi.org/10.1093/czoolo/59.2.170DOI Listing
April 2013

Dynamic Evolution of the LPS-Detoxifying Enzyme Intestinal Alkaline Phosphatase in Zebrafish and Other Vertebrates.

Front Immunol 2012 12;3:314. Epub 2012 Oct 12.

Institute of Molecular Biology, University of Oregon Eugene, OR, USA.

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http://dx.doi.org/10.3389/fimmu.2012.00314DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3469785PMC
October 2012

The role of stat1b in zebrafish hematopoiesis.

Mech Dev 2011 Sep-Dec;128(7-10):442-56. Epub 2011 Sep 3.

Institute of Neuroscience, University of Oregon, 1425 E. 13th Avenue, Eugene, OR 97403, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S092547731100096
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http://dx.doi.org/10.1016/j.mod.2011.08.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3223297PMC
March 2012

Evolution of the osteoblast: skeletogenesis in gar and zebrafish.

BMC Evol Biol 2012 Mar 5;12:27. Epub 2012 Mar 5.

Institute of Neuroscience, University of Oregon, Eugene, OR 97403-1254, USA.

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http://dx.doi.org/10.1186/1471-2148-12-27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3314580PMC
March 2012

Conserved synteny and the zebrafish genome.

Methods Cell Biol 2011 ;104:259-85

University of Oregon, Center for Ecology and Evolutionary Biology, Eugene Oregon, USA.

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http://dx.doi.org/10.1016/B978-0-12-374814-0.00015-XDOI Listing
January 2012

Sox9 is upstream of microRNA-140 in cartilage.

Appl Biochem Biotechnol 2012 Jan 4;166(1):64-71. Epub 2011 Nov 4.

Department of Orthopaedic Surgery, Shinshu University School of Medicine, Matsumoto, Japan.

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http://link.springer.com/10.1007/s12010-011-9404-y
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http://dx.doi.org/10.1007/s12010-011-9404-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3774128PMC
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miR-196 regulates axial patterning and pectoral appendage initiation.

Dev Biol 2011 Sep 20;357(2):463-77. Epub 2011 Jul 20.

Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.

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http://dx.doi.org/10.1016/j.ydbio.2011.07.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164755PMC
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