Publications by authors named "John P Pollinger"

27Publications

Interactions between demography, genetics, and landscape connectivity increase extinction probability for a small population of large carnivores in a major metropolitan area.

Proc Biol Sci 2016 Aug;283(1837)

La Kretz Center for California Conservation, Institute of the Environment and Sustainability, University of California, Los Angeles, CA 90095, USA National Park Service, Santa Monica Mountains National Recreation Area, Thousand Oaks, CA 91302, USA Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1098/rspb.2016.0957DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013791PMC
August 2016

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf.

Sci Adv 2016 Jul 27;2(7):e1501714. Epub 2016 Jul 27.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095-1606, USA.

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http://dx.doi.org/10.1126/sciadv.1501714DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5919777PMC
July 2016

Admixture mapping identifies introgressed genomic regions in North American canids.

Mol Ecol 2016 Jun 12;25(11):2443-53. Epub 2016 May 12.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.

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http://doi.wiley.com/10.1111/mec.13667
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http://dx.doi.org/10.1111/mec.13667DOI Listing
June 2016

Disease and freeways drive genetic change in urban bobcat populations.

Evol Appl 2015 Jan 2;8(1):75-92. Epub 2014 Dec 2.

Department of Ecology and Evolutionary Biology, University of California Los Angeles, CA, USA.

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http://dx.doi.org/10.1111/eva.12226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4310583PMC
January 2015

Individual behaviors dominate the dynamics of an urban mountain lion population isolated by roads.

Curr Biol 2014 Sep 14;24(17):1989-94. Epub 2014 Aug 14.

Wildlife and Ecology Unit, Veterinary Genetics Laboratory and Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, 1089 Veterinary Medicine Drive, Davis, CA 95616, USA.

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http://dx.doi.org/10.1016/j.cub.2014.07.029DOI Listing
September 2014

Hypoxia adaptations in the grey wolf (Canis lupus chanco) from Qinghai-Tibet Plateau.

PLoS Genet 2014 Jul 31;10(7):e1004466. Epub 2014 Jul 31.

Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, Chengdu research base of giant panda breeding, Chengdu, Sichuan Province, P. R. China.

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http://dx.doi.org/10.1371/journal.pgen.1004466DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117439PMC
July 2014

Intraspecific morphological and genetic variation of common species predicts ranges of threatened ones.

Proc Biol Sci 2013 Jun 17;280(1760):20130423. Epub 2013 Apr 17.

Center for Tropical Research, Institute of Environment and Sustainability, University of California, Los Angeles, La Kretz Hall, Suite 300, 619 Charles E. Young Dr. East, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1098/rspb.2013.0423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3652462PMC
June 2013

Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping.

Mamm Genome 2013 Feb 12;24(1-2):80-8. Epub 2012 Oct 12.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA.

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http://link.springer.com/content/pdf/10.1007%2Fs00335-012-94
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http://link.springer.com/10.1007/s00335-012-9432-0
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http://dx.doi.org/10.1007/s00335-012-9432-0DOI Listing
February 2013

Pandemic A/H1N1/2009 influenza virus in swine, Cameroon, 2010.

Vet Microbiol 2012 Apr 12;156(1-2):189-92. Epub 2011 Sep 12.

University of California, Los Angeles, 619 Charles E. Young Dr. East, La Kretz Hall, Suite 300, Box 951496, Los Angeles, CA 90095-1496, USA.

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http://dx.doi.org/10.1016/j.vetmic.2011.09.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251638PMC
April 2012

A novel assessment of population structure and gene flow in grey wolf populations of the Northern Rocky Mountains of the United States.

Mol Ecol 2010 Oct 16;19(20):4412-27. Epub 2010 Aug 16.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1111/j.1365-294X.2010.04769.xDOI Listing
October 2010

Mapping the risk of avian influenza in wild birds in the US.

BMC Infect Dis 2010 Jun 23;10:187. Epub 2010 Jun 23.

Center for Tropical Research, Institute of the Environment, University of California, Los Angeles, La Kretz Hall, Suite 300, Box 951496, Los Angeles, CA 90095-1496, USA.

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http://bmcinfectdis.biomedcentral.com/articles/10.1186/1471-
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http://dx.doi.org/10.1186/1471-2334-10-187DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912310PMC
June 2010

Modeling environmentally associated morphological and genetic variation in a rainforest bird, and its application to conservation prioritization.

Evol Appl 2010 Jan 16;3(1):1-16. Epub 2009 Jul 16.

Center for Tropical Research, Institute of the Environment, University of California Los Angeles, CA, USA ; Department of Ecology and Evolutionary Biology, University of California Los Angeles, CA, USA.

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http://doi.wiley.com/10.1111/j.1752-4571.2009.00093.x
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http://dx.doi.org/10.1111/j.1752-4571.2009.00093.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3352455PMC
January 2010

Evolutionary history of the Falklands wolf.

Curr Biol 2009 Nov;19(20):R937-8

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, 90095-1606, USA.

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http://dx.doi.org/10.1016/j.cub.2009.09.018DOI Listing
November 2009

Characterization of 12 polymorphic microsatellite markers for a facultatively eusocial sweat bee (Megalopta genalis).

Mol Ecol Resour 2009 Nov 15;9(6):1527-9. Epub 2009 Apr 15.

Department of Ecology and Evolutionary Biology, 621 Charles E. Young Dr. South, University of California, Los Angeles, CA 90095 USA Smithsonian Tropical Research Institute, Box 0843-03092, Balboa, Ancon, Republic of Panama.

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http://doi.wiley.com/10.1111/j.1755-0998.2009.02693.x
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http://dx.doi.org/10.1111/j.1755-0998.2009.02693.xDOI Listing
November 2009

Characterization of 15 tetranucleotide microsatellite markers in the ringtail (Bassariscus astutus).

Mol Ecol Resour 2009 Jan 22;9(1):210-2. Epub 2008 Oct 22.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, 621 Charles E. Young Drive South, Los Angeles, CA 90095, USA Department of Fish, Wildlife and Conservation Ecology, New Mexico State University, Knox Hall 132, 2980 South Espina, Las Cruces, NM 88003, USA.

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http://dx.doi.org/10.1111/j.1755-0998.2008.02374.xDOI Listing
January 2009

Extensive population genetic structure in the giraffe.

BMC Biol 2007 Dec 21;5:57. Epub 2007 Dec 21.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.

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http://dx.doi.org/10.1186/1741-7007-5-57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2254591PMC
December 2007

The genealogy and genetic viability of reintroduced Yellowstone grey wolves.

Mol Ecol 2008 Jan 18;17(1):252-74. Epub 2007 Sep 18.

University of California, Los Angeles, Ecology and Evolutionary Biology, 621 Charles E. Young Dr South, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1111/j.1365-294X.2007.03468.xDOI Listing
January 2008

Evolutionary consequences of human disturbance in a rainforest bird species from Central Africa.

Mol Ecol 2008 Jan 12;17(1):58-71. Epub 2007 Sep 12.

Center for Tropical Research, Institute of the Environment, University of California Los Angeles, 619 Charles Young Dr, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1111/j.1365-294X.2007.03478.xDOI Listing
January 2008

The role of geography and ecology in shaping the phylogeography of the speckled hummingbird (Adelomyia melanogenys) in Ecuador.

Mol Phylogenet Evol 2007 Jun 17;43(3):795-807. Epub 2006 Nov 17.

Department of Biology, San Francisco State University, San Francisco, CA 94132, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S105579030600441
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http://dx.doi.org/10.1016/j.ympev.2006.11.006DOI Listing
June 2007

A southern California freeway is a physical and social barrier to gene flow in carnivores.

Mol Ecol 2006 Jun;15(7):1733-41

Department of Ecology and Evolutionary Biology, 621 Charles Young Dr. South, University of California, Los Angeles, CA 90095, USA.

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http://doi.wiley.com/10.1111/j.1365-294X.2006.02907.x
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http://dx.doi.org/10.1111/j.1365-294X.2006.02907.xDOI Listing
June 2006

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Authors:
Kerstin Lindblad-Toh Claire M Wade Tarjei S Mikkelsen Elinor K Karlsson David B Jaffe Michael Kamal Michele Clamp Jean L Chang Edward J Kulbokas Michael C Zody Evan Mauceli Xiaohui Xie Matthew Breen Robert K Wayne Elaine A Ostrander Chris P Ponting Francis Galibert Douglas R Smith Pieter J DeJong Ewen Kirkness Pablo Alvarez Tara Biagi William Brockman Jonathan Butler Chee-Wye Chin April Cook James Cuff Mark J Daly David DeCaprio Sante Gnerre Manfred Grabherr Manolis Kellis Michael Kleber Carolyne Bardeleben Leo Goodstadt Andreas Heger Christophe Hitte Lisa Kim Klaus-Peter Koepfli Heidi G Parker John P Pollinger Stephen M J Searle Nathan B Sutter Rachael Thomas Caleb Webber Jennifer Baldwin Adal Abebe Amr Abouelleil Lynne Aftuck Mostafa Ait-Zahra Tyler Aldredge Nicole Allen Peter An Scott Anderson Claudel Antoine Harindra Arachchi Ali Aslam Laura Ayotte Pasang Bachantsang Andrew Barry Tashi Bayul Mostafa Benamara Aaron Berlin Daniel Bessette Berta Blitshteyn Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Adam Brown Patrick Cahill Nadia Calixte Jody Camarata Yama Cheshatsang Jeffrey Chu Mieke Citroen Alville Collymore Patrick Cooke Tenzin Dawoe Riza Daza Karin Decktor Stuart DeGray Norbu Dhargay Kimberly Dooley Kathleen Dooley Passang Dorje Kunsang Dorjee Lester Dorris Noah Duffey Alan Dupes Osebhajajeme Egbiremolen Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Patricia Ferreira Sheila Fisher Mike FitzGerald Karen Foley Chelsea Foley Alicia Franke Dennis Friedrich Diane Gage Manuel Garber Gary Gearin Georgia Giannoukos Tina Goode Audra Goyette Joseph Graham Edward Grandbois Kunsang Gyaltsen Nabil Hafez Daniel Hagopian Birhane Hagos Jennifer Hall Claire Healy Ryan Hegarty Tracey Honan Andrea Horn Nathan Houde Leanne Hughes Leigh Hunnicutt M Husby Benjamin Jester Charlien Jones Asha Kamat Ben Kanga Cristyn Kells Dmitry Khazanovich Alix Chinh Kieu Peter Kisner Mayank Kumar Krista Lance Thomas Landers Marcia Lara William Lee Jean-Pierre Leger Niall Lennon Lisa Leuper Sarah LeVine Jinlei Liu Xiaohong Liu Yeshi Lokyitsang Tashi Lokyitsang Annie Lui Jan Macdonald John Major Richard Marabella Kebede Maru Charles Matthews Susan McDonough Teena Mehta James Meldrim Alexandre Melnikov Louis Meneus Atanas Mihalev Tanya Mihova Karen Miller Rachel Mittelman Valentine Mlenga Leonidas Mulrain Glen Munson Adam Navidi Jerome Naylor Tuyen Nguyen Nga Nguyen Cindy Nguyen Thu Nguyen Robert Nicol Nyima Norbu Choe Norbu Nathaniel Novod Tenchoe Nyima Peter Olandt Barry O'Neill Keith O'Neill Sahal Osman Lucien Oyono Christopher Patti Danielle Perrin Pema Phunkhang Fritz Pierre Margaret Priest Anthony Rachupka Sujaa Raghuraman Rayale Rameau Verneda Ray Christina Raymond Filip Rege Cecil Rise Julie Rogers Peter Rogov Julie Sahalie Sampath Settipalli Theodore Sharpe Terrance Shea Mechele Sheehan Ngawang Sherpa Jianying Shi Diana Shih Jessie Sloan Cherylyn Smith Todd Sparrow John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Sabrina Stone Sean Sykes Pierre Tchuinga Pema Tenzing Senait Tesfaye Dawa Thoulutsang Yama Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Vijay Venkataraman Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Shuli Yang Xiaoping Yang Geneva Young Qing Yu Joanne Zainoun Lisa Zembek Andrew Zimmer Eric S Lander

Nature 2005 Dec;438(7069):803-19

Broad Institute of Harvard and MIT, 320 Charles Street, Cambridge, Massachusetts 02141, USA.

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http://www.nature.com/articles/nature04338
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http://dx.doi.org/10.1038/nature04338DOI Listing
December 2005

Selective sweep mapping of genes with large phenotypic effects.

Genome Res 2005 Dec;15(12):1809-19

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095-1606, USA.

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http://dx.doi.org/10.1101/gr.4374505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1356119PMC
December 2005