Publications by authors named "John Obenauer"

24Publications

A Predictor of Pathological Complete Response to Neoadjuvant Chemotherapy Stratifies Triple Negative Breast Cancer Patients with High Risk of Recurrence.

Sci Rep 2019 10 16;9(1):14863. Epub 2019 Oct 16.

Division of Hematology/Oncology, University of Pittsburg School of Medicine, 300 Halket St # 4628, Pittsburgh, PA, 15213, USA.

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http://dx.doi.org/10.1038/s41598-019-51335-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6795899PMC
October 2019

Survival analysis of infected mice reveals pathogenic variations in the genome of avian H1N1 viruses.

Sci Rep 2014 Dec 12;4:7455. Epub 2014 Dec 12.

Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, 38105, United States.

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http://dx.doi.org/10.1038/srep07455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4264002PMC
December 2014

Genome-wide and single-cell analyses reveal a context dependent relationship between CBP recruitment and gene expression.

Nucleic Acids Res 2014 Oct 23;42(18):11363-82. Epub 2014 Sep 23.

Department of Biochemistry, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, TN 38105, USA.

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http://dx.doi.org/10.1093/nar/gku827DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191404PMC
October 2014

Globin lentiviral vector insertions can perturb the expression of endogenous genes in beta-thalassemic hematopoietic cells.

Mol Ther 2008 Mar 15;16(3):525-33. Epub 2008 Jan 15.

Department of Hematology, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, USA.

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http://dx.doi.org/10.1038/sj.mt.6300394DOI Listing
March 2008

Persistent host markers in pandemic and H5N1 influenza viruses.

J Virol 2007 Oct 25;81(19):10292-9. Epub 2007 Jul 25.

Hartwell Center for Bioinformatics and Biotechnology, St. Jude Children's Research Hospital, and Department of Pathology, University of Tennessee Health Science Center, Memphis, TN 38105-2794, USA.

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http://dx.doi.org/10.1128/JVI.00921-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2045501PMC
October 2007

Proteomic studies of the intrinsically unstructured mammalian proteome.

J Proteome Res 2006 Oct;5(10):2839-48

Department of Structural Biology, St. Jude Children's Research Hospital, and Department of Molecular Sciences, University of Tennessee Health Sciences Center, Memphis, Tennessee 38163, USA.

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http://dx.doi.org/10.1021/pr060328cDOI Listing
October 2006

Large-scale sequence analysis of avian influenza isolates.

Science 2006 Mar 26;311(5767):1576-80. Epub 2006 Jan 26.

Hartwell Center for Bioinformatics and Biotechnology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.

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http://dx.doi.org/10.1126/science.1121586DOI Listing
March 2006

Computational prediction of protein-protein interactions.

Methods Mol Biol 2004 ;261:445-68

Center for Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.

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http://dx.doi.org/10.1385/1-59259-762-9:445DOI Listing
July 2004

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.

Nucleic Acids Res 2003 Jul;31(13):3635-41

Center for Cancer Research, E18-580, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168990PMC
http://dx.doi.org/10.1093/nar/gkg584DOI Listing
July 2003

Comparison of functional domains in vertebrate-type ferredoxins.

Biochemistry 2002 May;41(19):5978-89

Department of Chemistry, Brandeis University, Waltham, Massachusetts 02454-9110, USA.

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http://dx.doi.org/10.1021/bi0200256DOI Listing
May 2002