John Novembre

John Novembre

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John Novembre

Publications by authors named "John Novembre"

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De novo mutation rate estimation in wolves of known pedigree.

Mol Biol Evol 2019 Jul 12. Epub 2019 Jul 12.

Department of Ecology and Evolution, University of Chicago, Chicago, IL.

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http://dx.doi.org/10.1093/molbev/msz159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6805234PMC
July 2019

Inference and visualization of DNA damage patterns using a grade of membership model.

Bioinformatics 2019 Apr;35(8):1292-1298

Department of Statistics, University of Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821257PMC
April 2019

Estimating recent migration and population-size surfaces.

PLoS Genet 2019 01 14;15(1):e1007908. Epub 2019 Jan 14.

Evolutionary Biology, University of Chicago, Chicago, Illinois, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007908DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347299PMC
January 2019

A tribute to a true conservation innovator, Brad McRae, 1966-2017.

Conserv Biol 2018 Oct 11. Epub 2018 Oct 11.

Conservation Science Partners, Inc., 11050 Pioneer Trail, Suite 202, Truckee, CA, 96161, U.S.A.

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http://dx.doi.org/10.1111/cobi.13235DOI Listing
October 2018

Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.

PLoS Genet 2018 09 6;14(9):e1007650. Epub 2018 Sep 6.

Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007650DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143271PMC
September 2018

Brad McRae (1966-2017).

Mol Ecol 2018 08;27(15):3035-3036

National Center for Ecological Analysis and Synthesis, University of California Santa Barbara, Santa Barbara, CA, USA.

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http://dx.doi.org/10.1111/mec.14568DOI Listing
August 2018

Estimating Time to the Common Ancestor for a Beneficial Allele.

Mol Biol Evol 2018 04;35(4):1003-1017

Department of Ecology and Evolution, University of Chicago, Chicago, IL.

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http://dx.doi.org/10.1093/molbev/msy006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888984PMC
April 2018

Tread Lightly Interpreting Polygenic Tests of Selection.

Genetics 2018 Apr;208(4):1351-1355

Institute of Science and Technology, A-3400 Klosterneuberg, Austria.

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http://dx.doi.org/10.1534/genetics.118.300786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5886544PMC
April 2018

Using pseudoalignment and base quality to accurately quantify microbial community composition.

PLoS Comput Biol 2018 04 16;14(4):e1006096. Epub 2018 Apr 16.

Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5945057PMC
April 2018

Overexpression of the Cytokine BAFF and Autoimmunity Risk.

N Engl J Med 2017 04;376(17):1615-1626

From Istituto di Ricerca Genetica e Biomedica, Consiglio Nazionale delle Ricerche Monserrato (M.S., V.O., M.L.I., M. Pitzalis, M. Pala, C.S., V.F., M.F., M. Deiana, I.A., E.P., A. Mulas, M.G.P., M. Lobina, S.L., Mara Marongiu, V.S., Michele Marongiu, G.S., F.B., A. Maschio, F.D., M. Dei, F.V., S.O., A.A., M.B.W., A. Meloni, S. Sanna, E.F., M.Z., F.C.), Center for Advanced Studies, Research, and Development in Sardinia, Parco Scientifico e Tecnologico della Sardegna (I.Z., M.F., R.C., G. Cuccuru), Struttura Complessa Disciplina di Ematologia e Centro Trapianto Cellule Staminali Emopoietiche Wilma Deplano, Ospedale Oncologico di Riferimento Regionale Armando Businco (M. Pani), Dipartimento di Sanità Pubblica, Medicina Clinica e Molecolare, Università di Cagliari (E.C., J.F., G. Coghe, L.L., G. Fenu), Azienda Ospedaliera Brotzu, S.C. Neurologia (P.F., M. Melis), Division of Rheumatology, University and University Hospital of Cagliari (M. Piga, A. Mathieu), Department of Medical Sciences M. Aresu, University of Cagliari (D.F., S.D.G., M.G.M.), Azienda Ospedaliera Brotzu, U.S. Gastroenterologia Pediatrica Ospedale Pediatrico Microcitemico A. Cao (M.C.), and Nephrology, Dialysis, and Transplantation Unit, Giuseppe Brotzu Hospital (A.P.), Cagliari, Dipartimento di Scienze Biomediche, Università degli Studi di Sassari (M.F., F.P., F.C.), Unit of Neurology, Department of Clinical and Experimental Medicine, University of Sassari (G. Farina, G.R.), and Servizio Trasfusionale (M.A.S.) and Clinica Medica (A.D.), Azienda Ospedaliero Universitaria di Sassari, Sassari, Neurology B, Department of Neurological, Biomedical, and Movement Sciences, University of Verona, Verona (G. Farina), Department of Health Sciences, Interdisciplinary Research Center of Autoimmune Diseases, University of Eastern Piedmont, Novara (N.B., S.D.), SC Neurologia, Dipartimento di Scienze Mediche, Istituti di Ricovero e Cura a Carattere Scientifico (IRCCS) Casa Sollievo della Sofferenza, San Giovanni Rotondo (M. Leone), Don C. Gnocchi Foundation IRCCS (F.R.G.), and Referral Center for Systemic Autoimmune Diseases Fondazione IRCCS Cá Granda Ospedale Maggiore Policlinico and University of Milan (M. Marchini), Milan, and Dipartimento di Scienze Cliniche e Molecolari, Università Politecnica delle Marche e Ospedali Riuniti, Ancona (M.G.D.) - all in Italy; Laboratory of Genetics and Genomics, National Institute on Aging, National Institutes of Health, Baltimore (M.L.I., M.G., D.S.); the Department of Clinical Neurosciences (M.B., S. Sawcer) and JDRF-Wellcome Trust Diabetes and Inflammation Laboratory, National Institute for Health Research Cambridge Biomedical Research Centre, Cambridge Institute for Medical Research (J.A.T.), University of Cambridge, Cambridge, United Kingdom; Department of Clinical Neuroscience, Karolinska Institutet at Karolinska University Hospital Solna (I.K., I.L.B., T.O., J.H.), Institute of Environmental Medicine (L.A.) and Institute of Environmental Medicine, Unit of Immunology and Chronic Disease (M.E.A.R.), Karolinska Institute, and Center for Occupational and Environmental Medicine, Stockholm County Council (L.A.), Stockholm; Department of Functional Biology, University of Oviedo, Oviedo (A.S.), Rheumatology Department, Hospital Universitario 12 de Octubre, Madrid (P.E.C.), Department of Internal Medicine, Hospital Universitario Virgen del Rocío, Seville (M.J.C.-P.), Laboratorio de Investigacion 10 and Rheumatology Unit, Instituto de Investigacion Sanitaria-Hospital Clinico Universitario de Santiago, Santiago de Compostela (A.G.), and Centro de Genómica e Investigación Oncológica, Pfizer-Universidad de Granada-Junta de Andalucía, Granada (M.E.A.R.) - all in Spain; Department of Human Genetics, University of Chicago, Chicago (J.H.M., J.N.); Centro Hospitalar do Porto-Hospital Santo Antonio and Unit for Multidisciplinary Research in Biomedicine-Unidade Multidisciplinar de Investigação Biomédica, Porto, Portugal (B.M.S.); Departments of Pathology and Genetics, Stanford University, Stanford, CA (S.B.M.); and Center for Statistical Genetics, University of Michigan, Ann Arbor (G.R.A.).

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http://dx.doi.org/10.1056/NEJMoa1610528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605835PMC
April 2017

A Temporal Perspective on the Interplay of Demography and Selection on Deleterious Variation in Humans.

G3 (Bethesda) 2017 03 10;7(3):1027-1037. Epub 2017 Mar 10.

Department of Ecology and Evolution, University of Chicago, Illinois 60637

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http://dx.doi.org/10.1534/g3.117.039651DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345704PMC
March 2017

Visualizing the geography of genetic variants.

Bioinformatics 2017 02;33(4):594-595

Department of Human Genetics.

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http://dx.doi.org/10.1093/bioinformatics/btw643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408806PMC
February 2017

Reconstructing genetic history of Siberian and Northeastern European populations.

Genome Res 2017 01 13;27(1):1-14. Epub 2016 Dec 13.

Division of Bioinformatics, Department of Preventive Medicine, University of Southern California, Keck School of Medicine, Los Angeles, California 90089, USA.

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http://dx.doi.org/10.1101/gr.202945.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5204334PMC
January 2017

Recent advances in the study of fine-scale population structure in humans.

Curr Opin Genet Dev 2016 Dec 20;41:98-105. Epub 2016 Sep 20.

Department of Human Genetics, University of Chicago, IL 60636, United States.

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http://dx.doi.org/10.1016/j.gde.2016.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291306PMC
December 2016

Pritchard, Stephens, and Donnelly on Population Structure.

Authors:
John Novembre

Genetics 2016 10;204(2):391-393

Department of Human Genetics and Department of Ecology and Evolutionary Biology, University of Chicago, Illinois 60637

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http://dx.doi.org/10.1534/genetics.116.195164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5068833PMC
October 2016

Chimpanzee genomic diversity reveals ancient admixture with bonobos.

Science 2016 10 27;354(6311):477-481. Epub 2016 Oct 27.

Institut de Biologia Evolutiva (Consejo Superior de Investigaciones Científicas-Universitat Pompeu Fabra), Barcelona Biomedical Research Park, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain. National Centre for Genomic Analysis-Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 08028 Barcelona, Spain. Institucio Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia 08010, Spain.

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http://dx.doi.org/10.1126/science.aag2602DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5546212PMC
October 2016

Conflation of Short Identity-by-Descent Segments Bias Their Inferred Length Distribution.

G3 (Bethesda) 2016 05 3;6(5):1287-96. Epub 2016 May 3.

Department of Human Genetics, University of Chicago, Illinois 60637

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http://dx.doi.org/10.1534/g3.116.027581DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4856080PMC
May 2016

Genetic subdivision and candidate genes under selection in North American grey wolves.

Mol Ecol 2016 01 5;25(1):380-402. Epub 2015 Nov 5.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, 610 Charles E. Young Drive East, Los Angeles, CA, 90095, USA.

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http://dx.doi.org/10.1111/mec.13364DOI Listing
January 2016

Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves.

Mol Ecol 2016 01 24;25(1):357-79. Epub 2015 Dec 24.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, 610 Charles E Young Dr East, Los Angeles, CA, 90095, USA.

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http://dx.doi.org/10.1111/mec.13467DOI Listing
January 2016

Visualizing spatial population structure with estimated effective migration surfaces.

Nat Genet 2016 Jan 7;48(1):94-100. Epub 2015 Dec 7.

Department of Statistics, The University of Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1038/ng.3464DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696895PMC
January 2016

Human evolution: ancient DNA steps into the language debate.

Authors:
John Novembre

Nature 2015 Jun;522(7555):164-5

Department of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1038/522164aDOI Listing
June 2015

Power analysis of artificial selection experiments using efficient whole genome simulation of quantitative traits.

Genetics 2015 Apr 10;199(4):991-1005. Epub 2015 Feb 10.

Department of Human Genetics, University of Chicago, Chicago, Illinois 60637

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http://dx.doi.org/10.1534/genetics.115.175075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4391575PMC
April 2015

Fast and accurate site frequency spectrum estimation from low coverage sequence data.

Bioinformatics 2015 Mar 30;31(5):720-7. Epub 2014 Oct 30.

Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA 90095, USA, Department of Human Genetics and Biomathematics, University of California, Los Angeles, Los Angeles, CA 90095, USA and Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu725DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341071PMC
March 2015

Spatial localization of recent ancestors for admixed individuals.

G3 (Bethesda) 2014 Nov 3;4(12):2505-18. Epub 2014 Nov 3.

Interdepartmental Program in Bioinformatics, University of California, Los Angeles, California 90095 Department of Human Genetics, University of California, Los Angeles, California 90095 Department of Pathology and Laboratory Medicine, Geffen School of Medicine at University of California, Los Angeles, California 90095

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http://dx.doi.org/10.1534/g3.114.014274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4267945PMC
November 2014

Fast spatial ancestry via flexible allele frequency surfaces.

Bioinformatics 2014 Oct 9;30(20):2915-22. Epub 2014 Jul 9.

Department of Statistics, University of Washington, Seattle, WA 98195, Department of Human Genetics, University of Chicago, Chicago, IL 60637 and Department of Biomathematics, Human Genetics, and Statistics, University of California Los Angeles, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184261PMC
October 2014

Analysis of rare variant population structure in Europeans explains differential stratification of gene-based tests.

Eur J Hum Genet 2014 Sep 8;22(9):1137-44. Epub 2014 Jan 8.

1] Department of Biostatistics and Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA [2] Department of Psychiatry, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1038/ejhg.2013.297DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4135410PMC
September 2014

Variations on a common STRUCTURE: new algorithms for a valuable model.

Authors:
John Novembre

Genetics 2014 Jul;197(3):809-11

Department of Human Genetics, University of Chicago, Chicago, Illinois 60637.

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http://dx.doi.org/10.1534/genetics.114.166264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4096362PMC
July 2014

Demographic events and evolutionary forces shaping European genetic diversity.

Cold Spring Harb Perspect Biol 2014 Jul 24;6(9):a008516. Epub 2014 Jul 24.

Department of Human Genetics, University of Chicago, Chicago, Illinois 60637.

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http://dx.doi.org/10.1101/cshperspect.a008516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4142961PMC
July 2014

Characterizing bias in population genetic inferences from low-coverage sequencing data.

Mol Biol Evol 2014 Mar 27;31(3):723-35. Epub 2013 Nov 27.

Department of Biostatistics, University of California, Los Angeles.

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http://dx.doi.org/10.1093/molbev/mst229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935184PMC
March 2014

forqs: forward-in-time simulation of recombination, quantitative traits and selection.

Bioinformatics 2014 Feb 10;30(4):576-7. Epub 2013 Dec 10.

Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA 90095 and Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928523PMC
February 2014

Novel statistical methods for integrating genetic and stable isotope data to infer individual-level migratory connectivity.

Mol Ecol 2013 Aug 30;22(16):4163-4176. Epub 2013 Jul 30.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, 90095, USA.

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http://dx.doi.org/10.1111/mec.12393DOI Listing
August 2013

Maximum likelihood estimation of frequencies of known haplotypes from pooled sequence data.

Mol Biol Evol 2013 May 30;30(5):1145-58. Epub 2013 Jan 30.

Bioinformatics Interdepartmental Program, University of California, Los Angeles, USA.

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http://dx.doi.org/10.1093/molbev/mst016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3670732PMC
May 2013

A new era of human population genetics.

Genome Biol 2012 Dec 26;13(12):182. Epub 2012 Dec 26.

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http://dx.doi.org/10.1186/gb-2012-13-12-182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3580407PMC
December 2012

Commentary on Sokal, Oden, and Thomson's "a problem with synthetic maps" (1999).

Authors:
John Novembre

Hum Biol 2012 Oct;84(5):623-6

Interdepartmental Program in Bioinformatics, Dept. of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA 90095-7239, USA.

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http://dx.doi.org/10.3378/027.084.0512DOI Listing
October 2012

A model-based approach for analysis of spatial structure in genetic data.

Nat Genet 2012 May 20;44(6):725-31. Epub 2012 May 20.

Interdepartmental Program in Bioinformatics, University of California, Los Angeles, California, USA.

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http://dx.doi.org/10.1038/ng.2285DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3592563PMC
May 2012

Human population structure and the adaptive response to pathogen-induced selection pressures.

Philos Trans R Soc Lond B Biol Sci 2012 Mar;367(1590):878-86

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA.

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http://dx.doi.org/10.1098/rstb.2011.0305DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267119PMC
March 2012

The ecology of emerging infectious diseases in migratory birds: an assessment of the role of climate change and priorities for future research.

Ecohealth 2012 Mar 25;9(1):80-8. Epub 2012 Feb 25.

Center for Tropical Research, Institute of the Environment and Sustainability, University of California, Los Angeles, Los Angeles, CA 90095-1496, USA.

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http://dx.doi.org/10.1007/s10393-012-0750-1DOI Listing
March 2012

Perspectives on human population structure at the cusp of the sequencing era.

Annu Rev Genomics Hum Genet 2011 ;12:245-74

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90403, USA.

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http://dx.doi.org/10.1146/annurev-genom-090810-183123DOI Listing
October 2011

Genetic variation in the Sorbs of eastern Germany in the context of broader European genetic diversity.

Eur J Hum Genet 2011 Sep 11;19(9):995-1001. Epub 2011 May 11.

Department of Eco & Evo Biol, Interdepartmental Program in Bioinformatics, University of California, Los Angeles, CA, USA.

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http://dx.doi.org/10.1038/ejhg.2011.65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179365PMC
September 2011

Molecular anthropology in the genomic era.

J Anthropol Sci 2010 ;88:93-112

Istituto Italiano di Antropologia, Rome, Italy.

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November 2010

Principal component analysis under population genetic models of range expansion and admixture.

Mol Biol Evol 2010 Jun 21;27(6):1257-68. Epub 2010 Jan 21.

Laboratoire Techniques de l'Ingénierie Médicale et de la Complexité, Faculty of Medicine, University Joseph Fourier, Grenoble Institute of Technology, Centre National de la Recherche Scientifique UMR5525, La Tronche, France.

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http://dx.doi.org/10.1093/molbev/msq010DOI Listing
June 2010

Likelihood-based inference in isolation-by-distance models using the spatial distribution of low-frequency alleles.

Evolution 2009 Nov 16;63(11):2914-25. Epub 2009 Jul 16.

Department of Ecology and Evolutionary Biology, Interdepartmental Program in Bioinformatics, University of California Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2009.00775.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989113PMC
November 2009

Spatial patterns of variation due to natural selection in humans.

Nat Rev Genet 2009 Nov 13;10(11):745-55. Epub 2009 Oct 13.

Department of Ecology and Evolutionary Biology, Interdepartmental Program in Bioinformatics, University of California-Los Angeles, Los Angeles, California 90095-1606, USA.

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http://dx.doi.org/10.1038/nrg2632DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989104PMC
November 2009

Fast model-based estimation of ancestry in unrelated individuals.

Genome Res 2009 Sep 31;19(9):1655-64. Epub 2009 Jul 31.

Department of Biomathematics, University of California at Los Angeles, Los Angeles, California 90095, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.094052.109
Publisher Site
http://dx.doi.org/10.1101/gr.094052.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752134PMC
September 2009

Genes mirror geography within Europe.

Nature 2008 Nov 31;456(7218):98-101. Epub 2008 Aug 31.

Department of Ecology and Evolutionary Biology, Interdepartmental Program in Bioinformatics, University of California-Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1038/nature07331DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735096PMC
November 2008

Interpreting principal component analyses of spatial population genetic variation.

Nat Genet 2008 May 20;40(5):646-9. Epub 2008 Apr 20.

Department of Human Genetics, University of Chicago, 920 E. 58th Street, CLSC 5th floor, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1038/ng.139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989108PMC
May 2008

Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard.

J Hered 2007 Jul-Aug;98(4):331-6. Epub 2007 Jul 4.

Museum of Vertebrate Zoology, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1093/jhered/esm031DOI Listing
November 2007

Adaptive drool in the gene pool.

Nat Genet 2007 Oct;39(10):1188-90

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http://dx.doi.org/10.1038/ng1007-1188DOI Listing
October 2007

The geographic spread of the CCR5 Delta32 HIV-resistance allele.

PLoS Biol 2005 Nov 18;3(11):e339. Epub 2005 Oct 18.

Department of Integrative Biology, University of California, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.0030339DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1255740PMC
November 2005

The evolutionary history of the CCR5-Delta32 HIV-resistance mutation.

Microbes Infect 2005 Feb 8;7(2):302-9. Epub 2005 Jan 8.

Department of Epidemiology and Public Health, Yale School of Medicine, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1016/j.micinf.2004.12.006DOI Listing
February 2005

Finding haplotype block boundaries by using the minimum-description-length principle.

Am J Hum Genet 2003 Aug 11;73(2):336-54. Epub 2003 Jul 11.

Department of Integrative Biology, University of California, Berkeley, CA, 94720, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182137PMC
http://dx.doi.org/10.1086/377106DOI Listing
August 2003

Codon usage patterns in cytochrome oxidase I across multiple insect orders.

J Mol Evol 2003 Jun;56(6):691-701

Division of Insect Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1007/s00239-002-2437-7DOI Listing
June 2003