John M Hancock

John M Hancock

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John M Hancock

John M Hancock

Publications by authors named "John M Hancock"

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BioCIDER: a Contextualisation InDEx for biological Resources discovery.

Bioinformatics 2017 Aug;33(16):2607-2608

ELIXIR Hub, The European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btx213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870719PMC
August 2017

An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK.

F1000Res 2016 21;5. Epub 2016 Dec 21.

School of Computer Science, University of Manchester, Manchester, UK.

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http://dx.doi.org/10.12688/f1000research.10473.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5265702PMC
December 2016

Human Variome Project Quality Assessment Criteria for Variation Databases.

Hum Mutat 2016 06 21;37(6):549-58. Epub 2016 Mar 21.

Generade Center of Expertise Genomics and University of Applied Sciences Leiden, Leiden, The Netherlands.

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http://dx.doi.org/10.1002/humu.22976DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6317523PMC
June 2016

Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics.

Authors:
Martin Hrabě de Angelis George Nicholson Mohammed Selloum Jacqui White Hugh Morgan Ramiro Ramirez-Solis Tania Sorg Sara Wells Helmut Fuchs Martin Fray David J Adams Niels C Adams Thure Adler Antonio Aguilar-Pimentel Dalila Ali-Hadji Gregory Amann Philippe André Sarah Atkins Aurelie Auburtin Abdel Ayadi Julien Becker Lore Becker Elodie Bedu Raffi Bekeredjian Marie-Christine Birling Andrew Blake Joanna Bottomley Mike Bowl Véronique Brault Dirk H Busch James N Bussell Julia Calzada-Wack Heather Cater Marie-France Champy Philippe Charles Claire Chevalier Francesco Chiani Gemma F Codner Roy Combe Roger Cox Emilie Dalloneau André Dierich Armida Di Fenza Brendan Doe Arnaud Duchon Oliver Eickelberg Chris T Esapa Lahcen El Fertak Tanja Feigel Irina Emelyanova Jeanne Estabel Jack Favor Ann Flenniken Alessia Gambadoro Lilian Garrett Hilary Gates Anna-Karin Gerdin George Gkoutos Simon Greenaway Lisa Glasl Patrice Goetz Isabelle Goncalves Da Cruz Alexander Götz Jochen Graw Alain Guimond Wolfgang Hans Geoff Hicks Sabine M Hölter Heinz Höfler John M Hancock Robert Hoehndorf Tertius Hough Richard Houghton Anja Hurt Boris Ivandic Hughes Jacobs Sylvie Jacquot Nora Jones Natasha A Karp Hugo A Katus Sharon Kitchen Tanja Klein-Rodewald Martin Klingenspor Thomas Klopstock Valerie Lalanne Sophie Leblanc Christoph Lengger Elise le Marchand Tonia Ludwig Aline Lux Colin McKerlie Holger Maier Jean-Louis Mandel Susan Marschall Manuel Mark David G Melvin Hamid Meziane Kateryna Micklich Christophe Mittelhauser Laurent Monassier David Moulaert Stéphanie Muller Beatrix Naton Frauke Neff Patrick M Nolan Lauryl Mj Nutter Markus Ollert Guillaume Pavlovic Natalia S Pellegata Emilie Peter Benoit Petit-Demoulière Amanda Pickard Christine Podrini Paul Potter Laurent Pouilly Oliver Puk David Richardson Stephane Rousseau Leticia Quintanilla-Fend Mohamed M Quwailid Ildiko Racz Birgit Rathkolb Fabrice Riet Janet Rossant Michel Roux Jan Rozman Ed Ryder Jennifer Salisbury Luis Santos Karl-Heinz Schäble Evelyn Schiller Anja Schrewe Holger Schulz Ralf Steinkamp Michelle Simon Michelle Stewart Claudia Stöger Tobias Stöger Minxuan Sun David Sunter Lydia Teboul Isabelle Tilly Glauco P Tocchini-Valentini Monica Tost Irina Treise Laurent Vasseur Emilie Velot Daniela Vogt-Weisenhorn Christelle Wagner Alison Walling Bruno Weber Olivia Wendling Henrik Westerberg Monja Willershäuser Eckhard Wolf Anne Wolter Joe Wood Wolfgang Wurst Ali Önder Yildirim Ramona Zeh Andreas Zimmer Annemarie Zimprich Chris Holmes Karen P Steel Yann Herault Valérie Gailus-Durner Ann-Marie Mallon Steve Dm Brown

Nat Genet 2015 Sep 27;47(9):969-978. Epub 2015 Jul 27.

MRC Harwell, Medical Research Council, Harwell, UK.

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http://dx.doi.org/10.1038/ng.3360DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4564951PMC
September 2015

Commentary on Shimoyama et al. (2012): three ontologies to define phenotype measurement data.

Authors:
John M Hancock

Front Genet 2014 24;5:93. Epub 2014 Apr 24.

Department of Physiology, Development and Neuroscience, University of Cambridge Cambridge, UK.

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http://journal.frontiersin.org/article/10.3389/fgene.2014.00
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http://dx.doi.org/10.3389/fgene.2014.00093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006037PMC
May 2014

Analyzing gene expression data in mice with the Neuro Behavior Ontology.

Mamm Genome 2014 Feb 1;25(1-2):32-40. Epub 2013 Nov 1.

Department of Computer Science, University of Aberystwyth, Old College, King Street, Aberystwyth, SY23 2AX, UK,

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http://dx.doi.org/10.1007/s00335-013-9481-zDOI Listing
February 2014

Editorial: biological ontologies and semantic biology.

Authors:
John M Hancock

Front Genet 2014 4;5:18. Epub 2014 Feb 4.

Department of Physiology, Development and Neuroscience, University of Cambridge Cambridge, UK.

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http://journal.frontiersin.org/article/10.3389/fgene.2014.00
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http://dx.doi.org/10.3389/fgene.2014.00018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912459PMC
February 2014

A tale of two drug targets: the evolutionary history of BACE1 and BACE2.

Front Genet 2013 17;4:293. Epub 2013 Dec 17.

Department of Physiology, Development and Neuroscience, University of Cambridge Cambridge, UK.

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http://dx.doi.org/10.3389/fgene.2013.00293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865767PMC
January 2014

Functional modelling of planar cell polarity: an approach for identifying molecular function.

BMC Dev Biol 2013 May 14;13:20. Epub 2013 May 14.

Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.

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http://dx.doi.org/10.1186/1471-213X-13-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3662592PMC
May 2013

NucleoFinder: a statistical approach for the detection of nucleosome positions.

Bioinformatics 2013 Mar 6;29(6):711-6. Epub 2013 Jan 6.

Department of Statistics, University of Oxford, Oxford OX1 3TG, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3597142PMC
March 2013

Low microsatellite frequencies in neuron and brain expressed microRNAs.

Gene 2012 Oct 28;508(1):73-7. Epub 2012 Jul 28.

Department of Zoology, JN Vyas University, Jodhpur (Raj.), India.

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http://dx.doi.org/10.1016/j.gene.2012.07.039DOI Listing
October 2012

Integration of global resources for human genetic variation and disease.

Hum Mutat 2012 May 6;33(5):813-6. Epub 2012 Apr 6.

Department of Physiology Development and Neuroscience, University of Cambridge, Cambridge, UK.

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http://doi.wiley.com/10.1002/humu.22079
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http://dx.doi.org/10.1002/humu.22079DOI Listing
May 2012

A gene-phenotype network for the laboratory mouse and its implications for systematic phenotyping.

PLoS One 2011 19;6(5):e19693. Epub 2011 May 19.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019693PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098258PMC
November 2011

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins.

BMC Evol Biol 2011 May 25;11:142. Epub 2011 May 25.

Centre for Bioinformatics, Department of Informatics, School of Natural and Mathematical Sciences, King's College London, Strand, UK.

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http://dx.doi.org/10.1186/1471-2148-11-142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3112093PMC
May 2011

Research funding. Sustaining the data and bioresource commons.

Science 2010 Oct;330(6004):592-3

Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, CB2 3EG, UK.

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http://dx.doi.org/10.1126/science.1191506DOI Listing
October 2010

Phenotype ontologies for mouse and man: bridging the semantic gap.

Dis Model Mech 2010 May-Jun;3(5-6):281-9

Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1242/dmm.002790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860848PMC
September 2010

Mouse Resource Browser--a database of mouse databases.

Database (Oxford) 2010 Jul 6;2010:baq010. Epub 2010 Jul 6.

Institute of Immunology, Biomedical Sciences Research Center Alexander Fleming, 34 Fleming Street, 16672 Athens, Greece.

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http://dx.doi.org/10.1093/database/baq010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911845PMC
July 2010

MouseBook: an integrated portal of mouse resources.

Nucleic Acids Res 2010 Jan 23;38(Database issue):D593-9. Epub 2009 Oct 23.

MRC Harwell, Mammalian Genetics Unit and the Mary Lyon Centre, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/nar/gkp867DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808969PMC
January 2010

EuroPhenome: a repository for high-throughput mouse phenotyping data.

Nucleic Acids Res 2010 Jan 23;38(Database issue):D577-85. Epub 2009 Nov 23.

MRC Harwell, Mammalian Genetics Unit, MRC Harwell, Mary Lyon Centre, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/nar/gkp1007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808931PMC
January 2010

The functional annotation of mammalian genomes: the challenge of phenotyping.

Annu Rev Genet 2009 ;43:305-33

MRC Mammalian Genetics Unit, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD, United Kingdom.

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http://dx.doi.org/10.1146/annurev-genet-102108-134143DOI Listing
December 2009

Models for financial sustainability of biological databases and resources.

Database (Oxford) 2009 23;2009:bap017. Epub 2009 Oct 23.

Institute of Immunology, Biomedical Sciences Research Center Alexander Fleming, 34 Fleming Street, 16672 Athens, Greece, MRC Mary Lyon Centre, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, European Bioinformatics Institute, EMBL, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, Experimental Mouse Genetics, Helmholtz Centre for Infection Research & University of Veterinary Medicine, Hannover, Inhoffenstrabe 7, D-38124 Braunschweig, Germany, EMBL-Monterotondo Outstation, Via Ramarini 32, 00015 Monterotondo-Scalo (RM), Italy, Bioinformatics Group, MRC Harwell, Harwell, Oxfordshire, OX11 0RD and Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge, CB2 3DY, UK.

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http://dx.doi.org/10.1093/database/bap017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790311PMC
October 2009

Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins.

Genome Biol 2009 1;10(6):R59. Epub 2009 Jun 1.

Bioinformatics Group, MRC Harwell, Mammalian Genetics Unit, Harwell Science and Innovation Campus, Harwell, Oxfordshire OX110RD, UK.

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https://pdfs.semanticscholar.org/7c52/4088d3c9924cbc49a1b2c7
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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2009-10-6-r59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2718493PMC
September 2009

Post-publication sharing of data and tools.

Nature 2009 Sep;461(7261):171-3

Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, CB2 3EG, UK.

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http://dx.doi.org/10.1038/461171aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711854PMC
September 2009

Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Mamm Genome 2009 Aug 2;20(8):457-61. Epub 2009 Aug 2.

Bioinformatics Group, MRC Harwell, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1007/s00335-009-9208-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759022PMC
August 2009

Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data.

BMC Bioinformatics 2009 May 6;10 Suppl 5:S2. Epub 2009 May 6.

MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1186/1471-2105-10-S5-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2679402PMC
May 2009

Planning the human variome project: the Spain report.

Authors:
Jim Kaput Richard G H Cotton Lauren Hardman Michael Watson Aida I Al Aqeel Jumana Y Al-Aama Fahd Al-Mulla Santos Alonso Stefan Aretz Arleen D Auerbach Bharati Bapat Inge T Bernstein Jong Bhak Stacey L Bleoo Helmut Blöcker Steven E Brenner John Burn Mariona Bustamante Rita Calzone Anne Cambon-Thomsen Michele Cargill Paola Carrera Lawrence Cavedon Yoon Shin Cho Yeun-Jun Chung Mireille Claustres Garry Cutting Raymond Dalgleish Johan T den Dunnen Carlos Díaz Steven Dobrowolski M Rosário N dos Santos Rosemary Ekong Simon B Flanagan Paul Flicek Yoichi Furukawa Maurizio Genuardi Ho Ghang Maria V Golubenko Marc S Greenblatt Ada Hamosh John M Hancock Ross Hardison Terence M Harrison Robert Hoffmann Rania Horaitis Heather J Howard Carol Isaacson Barash Neskuts Izagirre Jongsun Jung Toshio Kojima Sandrine Laradi Yeon-Su Lee Jong-Young Lee Vera L Gil-da-Silva-Lopes Finlay A Macrae Donna Maglott Makia J Marafie Steven G E Marsh Yoichi Matsubara Ludwine M Messiaen Gabriela Möslein Mihai G Netea Melissa L Norton Peter J Oefner William S Oetting James C O'Leary Ana Maria Oller de Ramirez Mark H Paalman Jillian Parboosingh George P Patrinos Giuditta Perozzi Ian R Phillips Sue Povey Suyash Prasad Ming Qi David J Quin Rajkumar S Ramesar C Sue Richards Judith Savige Dagmar G Scheible Rodney J Scott Daniela Seminara Elizabeth A Shephard Rolf H Sijmons Timothy D Smith María-Jesús Sobrido Toshihiro Tanaka Sean V Tavtigian Graham R Taylor Jon Teague Thoralf Töpel Mollie Ullman-Cullere Joji Utsunomiya Henk J van Kranen Mauno Vihinen Elizabeth Webb Thomas K Weber Meredith Yeager Young I Yeom Seon-Hee Yim Hyang-Sook Yoo

Hum Mutat 2009 Apr;30(4):496-510

Division of Personalised Nutrition and Medicine, FDA/National Center for Toxicological Research, Jefferson, Arkansas 72079, USA.

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http://compbio.berkeley.edu/people/brenner/pubs/kaput-2009-h
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http://doi.wiley.com/10.1002/humu.20972
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http://dx.doi.org/10.1002/humu.20972DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5879779PMC
April 2009

Phylogenetic inference under recombination using Bayesian stochastic topology selection.

Bioinformatics 2009 Jan 20;25(2):197-203. Epub 2008 Nov 20.

Department of Statistics, Oxford, UK.

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http://dx.doi.org/10.1093/bioinformatics/btn607DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639012PMC
January 2009

Solutions for data integration in functional genomics: a critical assessment and case study.

Brief Bioinform 2008 Nov;9(6):532-44

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/
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http://dx.doi.org/10.1093/bib/bbn040DOI Listing
November 2008

EuroPhenome and EMPReSS: online mouse phenotyping resource.

Nucleic Acids Res 2008 Jan 28;36(Database issue):D715-8. Epub 2007 Sep 28.

MRC Mammalian Genetics Unit, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1093/nar/gkm728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238991PMC
January 2008

Phenobabelomics--mouse phenotype data resources.

Brief Funct Genomic Proteomic 2007 Dec 11;6(4):292-301. Epub 2008 Jan 11.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/bfgp/elm033DOI Listing
December 2007

Phenostat: visualization and statistical tool for analysis of phenotyping data.

Mamm Genome 2007 Sep 3;18(9):677-81. Epub 2007 Aug 3.

Mouse Biology Unit, European Molecular Biology Laboratory (EMBL), 00016, Monterotondo, Italy.

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http://dx.doi.org/10.1007/s00335-007-9042-4DOI Listing
September 2007

A kinetic core model of the glucose-stimulated insulin secretion network of pancreatic beta cells.

Mamm Genome 2007 Jul 21;18(6-7):508-20. Epub 2007 May 21.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1007/s00335-007-9011-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1998884PMC
July 2007

Gene factories, microfunctionalization and the evolution of gene families.

Authors:
John M Hancock

Trends Genet 2005 Nov 8;21(11):591-5. Epub 2005 Sep 8.

Medical Research Council Mammalian Genetics Unit, Harwell, Oxfordshire, UK, OX11 0RD.

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http://dx.doi.org/10.1016/j.tig.2005.08.008DOI Listing
November 2005

Using ontologies to describe mouse phenotypes.

Genome Biol 2005 20;6(1):R8. Epub 2004 Dec 20.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire, OX11 0RD, UK.

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http://dx.doi.org/10.1186/gb-2004-6-1-r8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC549069PMC
October 2005

EMPReSS: European mouse phenotyping resource for standardized screens.

Bioinformatics 2005 Jun 12;21(12):2930-1. Epub 2005 Apr 12.

MRC Mammalian Genetics Unit, Harwell, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti441DOI Listing
June 2005

CRAVE: a database, middleware and visualization system for phenotype ontologies.

Bioinformatics 2005 Apr 18;21(7):1257-62. Epub 2004 Nov 18.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1093/bioinformatics/bti147DOI Listing
April 2005

Simple sequence repeats in proteins and their significance for network evolution.

Gene 2005 Jan 15;345(1):113-8. Epub 2004 Dec 15.

Bioinformatics Group, MRC Mammalian Genetics Unit, Harwell, Oxfordshire OX11 0RD, UK.

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http://dx.doi.org/10.1016/j.gene.2004.11.023DOI Listing
January 2005

A bigger mouse? The rat genome unveiled.

Authors:
John M Hancock

Bioessays 2004 Oct;26(10):1039-42

MRC Mammalian Genetics Unit, Harwell, UK.

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http://doi.wiley.com/10.1002/bies.20121
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http://dx.doi.org/10.1002/bies.20121DOI Listing
October 2004

PlantProm: a database of plant promoter sequences.

Nucleic Acids Res 2003 Jan;31(1):114-7

Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, TW20 0EX, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165488PMC
http://dx.doi.org/10.1093/nar/gkg041DOI Listing
January 2003

Detecting cryptically simple protein sequences using the SIMPLE algorithm.

Bioinformatics 2002 May;18(5):672-8

Grup de Recerca en Informatica Biomèdica, Universitat Pompeu Fabra, Dr. Aiguader 80, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1093/bioinformatics/18.5.672DOI Listing
May 2002

Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects.

Authors:
John M Hancock

Genetica 2002 May;115(1):93-103

Department of Computer Science, Royal Holloway University of London, UK.

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http://dx.doi.org/10.1023/a:1016028332006DOI Listing
May 2002