John L Markley

John L Markley

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John L Markley

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Templated Collagen "Double Helices" Maintain Their Structure.

J Am Chem Soc 2020 Jan 8. Epub 2020 Jan 8.

Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States.

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http://dx.doi.org/10.1021/jacs.9b07583DOI Listing
January 2020

PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins.

Bioinformatics 2020 Jan 13. Epub 2020 Jan 13.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, WI, USA.

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http://dx.doi.org/10.1093/bioinformatics/btaa019DOI Listing
January 2020

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.

Structure 2019 Dec 25;27(12):1745-1759. Epub 2019 Nov 25.

Department of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158, USA; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2019.11.002DOI Listing
December 2019

Backbone resonance assignments and secondary structure of Ebola nucleoprotein 600-739 construct.

Biomol NMR Assign 2019 10 10;13(2):315-319. Epub 2019 May 10.

National Magnetic Resonance Facility at Madison, and Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, 53706, USA.

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http://link.springer.com/10.1007/s12104-019-09898-7
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http://dx.doi.org/10.1007/s12104-019-09898-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715526PMC
October 2019

View from Nuclear Magnetic Resonance Spectroscopy.

Authors:
John L Markley

Adv Exp Med Biol 2018;1105:19-22

Biochemistry Department, University of Wisconsin-Madison, Madison, WI, USA.

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http://dx.doi.org/10.1007/978-981-13-2200-6_3DOI Listing
July 2019

Current Solution NMR Techniques for Structure-Function Studies of Proteins and RNA Molecules.

Authors:
John L Markley

Adv Exp Med Biol 2018;1105:43-58

Biochemistry Department, University of Wisconsin-Madison, Madison, WI, USA.

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http://dx.doi.org/10.1007/978-981-13-2200-6_5DOI Listing
July 2019

I-PINE web server: an integrative probabilistic NMR assignment system for proteins.

J Biomol NMR 2019 May 4;73(5):213-222. Epub 2019 Jun 4.

National Magnetic Resonance Facility at Madison, and Biochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s10858-019-00255-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6579641PMC
May 2019

Automated evaluation of consistency within the PubChem Compound database.

Sci Data 2019 02 19;6:190023. Epub 2019 Feb 19.

National Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin Madison, Madison, Wisconsin 53706, USA.

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http://dx.doi.org/10.1038/sdata.2019.23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6380220PMC
February 2019

Tools for Enhanced NMR-Based Metabolomics Analysis.

Methods Mol Biol 2019 ;2037:413-427

Department of Biochemistry, University of Wisconsin Madison, Madison, WI, USA.

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http://dx.doi.org/10.1007/978-1-4939-9690-2_23DOI Listing
January 2019

Applications of Parametrized NMR Spin Systems of Small Molecules.

Anal Chem 2018 09 24;90(18):10646-10649. Epub 2018 Aug 24.

Department of Pathology and Immunology , Washington University School of Medicine , St. Louis , Missouri 63110 , United States.

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http://pubs.acs.org/doi/10.1021/acs.analchem.8b02660
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http://dx.doi.org/10.1021/acs.analchem.8b02660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6201686PMC
September 2018

Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering.

Structure 2018 08 5;26(8):1127-1136.e4. Epub 2018 Jul 5.

Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2018.05.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6082693PMC
August 2018

NMR as a Tool to Investigate the Processes of Mitochondrial and Cytosolic Iron-Sulfur Cluster Biosynthesis.

Molecules 2018 Aug 31;23(9). Epub 2018 Aug 31.

Biochemistry Department, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://www.mdpi.com/1420-3049/23/9/2213
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http://dx.doi.org/10.3390/molecules23092213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6205161PMC
August 2018

Interactions of iron-bound frataxin with ISCU and ferredoxin on the cysteine desulfurase complex leading to Fe-S cluster assembly.

J Inorg Biochem 2018 06 15;183:107-116. Epub 2018 Mar 15.

National Magnetic Resonance Facility at Madison and Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jinorgbio.2018.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5951399PMC
June 2018

PINE-SPARKY.2 for automated NMR-based protein structure research.

Bioinformatics 2018 05;34(9):1586-1588

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx785DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925765PMC
May 2018

Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

Methods Mol Biol 2017 ;1607:627-641

Protein Data Bank in Europe, European Molecular Biology Laboratory-European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1007/978-1-4939-7000-1_26DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823500PMC
March 2018

ISCU(M108I) and ISCU(D39V) Differ from Wild-Type ISCU in Their Failure To Form Cysteine Desulfurase Complexes Containing Both Frataxin and Ferredoxin.

Biochemistry 2018 03 14;57(9):1491-1500. Epub 2018 Feb 14.

National Magnetic Resonance Facility at Madison and Department of Biochemistry , University of Wisconsin-Madison , 433 Babcock Drive , Madison , Wisconsin 53706 , United States.

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http://dx.doi.org/10.1021/acs.biochem.7b01234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5842376PMC
March 2018

Caloric Restriction Engages Hepatic RNA Processing Mechanisms in Rhesus Monkeys.

Cell Metab 2018 03;27(3):677-688.e5

Department of Medicine, University of Wisconsin-Madison, Madison, WI 53705, USA; Geriatric Research, Education, and Clinical Center, William S. Middleton Memorial Veterans Hospital, Madison, WI 53705, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2018.01.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844481PMC
March 2018

Spin System Modeling of Nuclear Magnetic Resonance Spectra for Applications in Metabolomics and Small Molecule Screening.

Anal Chem 2017 11 7;89(22):12201-12208. Epub 2017 Nov 7.

National Magnetic Resonance Facility at Madison and BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acs.analchem.7b02884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705194PMC
November 2017

NMR-Based Identification of Metabolites in Polar and Non-Polar Extracts of Avian Liver.

Metabolites 2017 Nov 16;7(4). Epub 2017 Nov 16.

Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA.

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http://dx.doi.org/10.3390/metabo7040061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5746741PMC
November 2017

Broadening the functionality of a J-protein/Hsp70 molecular chaperone system.

PLoS Genet 2017 Oct 30;13(10):e1007084. Epub 2017 Oct 30.

Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679652PMC
October 2017

Relationship between recombinant protein expression and host metabolome as determined by two-dimensional NMR spectroscopy.

PLoS One 2017 9;12(5):e0177233. Epub 2017 May 9.

Department of Biochemistry, University of Wisconsin - Madison, Wisconsin, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177233PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423636PMC
September 2017

PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.

Structure 2017 09;25(9):1317-1318

School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW 2006, Australia; Department of Chemistry, University of Utah, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1016/j.str.2017.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5821105PMC
September 2017

Biomolecular NMR: Past and future.

Arch Biochem Biophys 2017 08 8;628:3-16. Epub 2017 May 8.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1016/j.abb.2017.05.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5701516PMC
August 2017

Unique identifiers for small molecules enable rigorous labeling of their atoms.

Sci Data 2017 05 23;4:170073. Epub 2017 May 23.

National Magnetic Resonance Facility at Madison, Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.

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http://dx.doi.org/10.1038/sdata.2017.73DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441290PMC
May 2017

Mitochondrial Cysteine Desulfurase and ISD11 Coexpressed in Escherichia coli Yield Complex Containing Acyl Carrier Protein.

ACS Chem Biol 2017 04 2;12(4):918-921. Epub 2017 Mar 2.

Biochemistry Department, University of Wisconsin-Madison , 433 Babcock Drive, Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acschembio.6b01005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5404276PMC
April 2017

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

Structure 2017 03 9;25(3):536-545. Epub 2017 Feb 9.

RCSB Protein Data Bank, Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; RCSB Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093, USA; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08903, USA.

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http://dx.doi.org/10.1016/j.str.2017.01.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360273PMC
March 2017

The future of NMR-based metabolomics.

Curr Opin Biotechnol 2017 02 28;43:34-40. Epub 2016 Aug 28.

Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E8; Department of Computing Science, University of Alberta, Edmonton, AB, Canada T6G 2E8.

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http://dx.doi.org/10.1016/j.copbio.2016.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5305426PMC
February 2017

Increasing rigor in NMR-based metabolomics through validated and open source tools.

Curr Opin Biotechnol 2017 02 16;43:56-61. Epub 2016 Sep 16.

Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA.

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http://dx.doi.org/10.1016/j.copbio.2016.08.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5305618PMC
February 2017

Human Mitochondrial Ferredoxin 1 (FDX1) and Ferredoxin 2 (FDX2) Both Bind Cysteine Desulfurase and Donate Electrons for Iron-Sulfur Cluster Biosynthesis.

Biochemistry 2017 01 11;56(3):487-499. Epub 2017 Jan 11.

Mitochondrial Protein Partnership, Center for Eukaryotic Structural Genomics, and ‡National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acs.biochem.6b00447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5267338PMC
January 2017

Structural/Functional Properties of Human NFU1, an Intermediate [4Fe-4S] Carrier in Human Mitochondrial Iron-Sulfur Cluster Biogenesis.

Structure 2016 12 3;24(12):2080-2091. Epub 2016 Nov 3.

Mitochondrial Proteome Project, Center for Eukaryotic Structural Genomics, University of Wisconsin-Madison, Madison, WI 53706, USA; Biochemistry Department, National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2016.08.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5166578PMC
December 2016

The archiving and dissemination of biological structure data.

Curr Opin Struct Biol 2016 10 21;40:17-22. Epub 2016 Jul 21.

Protein Data Bank in Europe, European Molecular Biology Laboratory-European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1016/j.sbi.2016.06.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161703PMC
October 2016

Mechanism of Histone H3K4me3 Recognition by the Plant Homeodomain of Inhibitor of Growth 3.

J Biol Chem 2016 08 8;291(35):18326-41. Epub 2016 Jun 8.

From the Department of Pharmaceutical Sciences, Albany College of Pharmacy and Health Sciences, Colchester, Vermont 05446,

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http://dx.doi.org/10.1074/jbc.M115.690651DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5000080PMC
August 2016

Structure and Function of the PriC DNA Replication Restart Protein.

J Biol Chem 2016 08 5;291(35):18384-96. Epub 2016 Jul 5.

From the Department of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin 53706,

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http://dx.doi.org/10.1074/jbc.M116.738781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5000084PMC
August 2016

Solution Structural Studies of GTP:Adenosylcobinamide-Phosphateguanylyl Transferase (CobY) from Methanocaldococcus jannaschii.

PLoS One 2015 29;10(10):e0141297. Epub 2015 Oct 29.

National Magnetic Resonance Facility at Madison and Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0141297PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626045PMC
June 2016

The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data.

J Biomol NMR 2016 06 12;65(2):51-7. Epub 2016 May 12.

National Magnetic Resonance Facility at Madison and Biochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s10858-016-0036-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4921114PMC
June 2016

NMRmix: A Tool for the Optimization of Compound Mixtures in 1D (1)H NMR Ligand Affinity Screens.

J Proteome Res 2016 Apr 23;15(4):1360-8. Epub 2016 Mar 23.

National Magnetic Resonance Facility at Madison, University of Wisconsin , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acs.jproteome.6b00121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820789PMC
April 2016

Integrative NMR for biomolecular research.

J Biomol NMR 2016 04 29;64(4):307-32. Epub 2016 Mar 29.

National Magnetic Resonance Facility at Madison and Biochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s10858-016-0029-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4861749PMC
April 2016

Structure-function relationships of brazzein variants with altered interactions with the human sweet taste receptor.

Protein Sci 2016 Mar 9;25(3):711-9. Epub 2016 Jan 9.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, 53706.

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http://dx.doi.org/10.1002/pro.2870DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4815422PMC
March 2016

Probabilistic validation of protein NMR chemical shift assignments.

J Biomol NMR 2016 Jan 2;64(1):17-25. Epub 2016 Jan 2.

Biochemistry Department, National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, WI, USA.

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http://dx.doi.org/10.1007/s10858-015-0007-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4744101PMC
January 2016

Solution structure of the 2A protease from a common cold agent, human rhinovirus C2, strain W12.

PLoS One 2014 17;9(6):e97198. Epub 2014 Jun 17.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America; Center for Eukaryotic Structural Genomics, Biochemistry Department, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097198PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061012PMC
October 2015

MolProbity for the masses-of data.

J Biomol NMR 2015 Sep 21;63(1):77-83. Epub 2015 Jul 21.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/s10858-015-9969-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4577456PMC
September 2015

The Complex Energy Landscape of the Protein IscU.

Biophys J 2015 Sep;109(5):1019-25

Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin; National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2015.07.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4564936PMC
September 2015

NMRFAM-SDF: a protein structure determination framework.

J Biomol NMR 2015 Aug 22;62(4):481-95. Epub 2015 Apr 22.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, USA.

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http://link.springer.com/content/pdf/10.1007%2Fs10858-015-99
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http://link.springer.com/10.1007/s10858-015-9933-8
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http://dx.doi.org/10.1007/s10858-015-9933-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4569665PMC
August 2015

ADAPT-NMR 3.0: utilization of BEST-type triple-resonance NMR experiments to accelerate the process of data collection and assignment.

J Biomol NMR 2015 Jul 29;62(3):247-52. Epub 2015 May 29.

National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, USA.

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http://dx.doi.org/10.1007/s10858-015-9950-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4687732PMC
July 2015

Human Cancer Antigen Globo H Is a Cell-Surface Ligand for Human Ribonuclease 1.

ACS Cent Sci 2015 Jul 13;1(4):181-190. Epub 2015 Jul 13.

Department of Biochemistry, National Magnetic Resonance Facility at Madison, and Department of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States ; Department of Biochemistry, National Magnetic Resonance Facility at Madison, and Department of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/acscentsci.5b00164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571170PMC
July 2015

Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies.

Biochim Biophys Acta 2015 Jun 22;1853(6):1416-28. Epub 2014 Nov 22.

Biochemistry Department, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbamcr.2014.11.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390431PMC
June 2015

Assignments of RNase A by ADAPT-NMR and enhancer.

Biomol NMR Assign 2015 Apr 12;9(1):81-8. Epub 2014 Mar 12.

National Magnetic Resonance Facility at Madison, University of Wisconsin - Madison, 433 Babcock Drive, Madison, WI, 53706, USA,

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http://dx.doi.org/10.1007/s12104-014-9549-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162851PMC
April 2015

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Bioinformatics 2015 Apr 12;31(8):1325-7. Epub 2014 Dec 12.

National Magnetics Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4393527PMC
April 2015

PONDEROSA-C/S: client-server based software package for automated protein 3D structure determination.

J Biomol NMR 2014 Nov 5;60(2-3):73-5. Epub 2014 Sep 5.

National Magnetic Resonance Facility at Madison, and Biochemistry Department, University of Wisconsin-Madison, Madison, WI, 53706, USA,

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http://dx.doi.org/10.1007/s10858-014-9855-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4207954PMC
November 2014

The specialized Hsp70 (HscA) interdomain linker binds to its nucleotide-binding domain and stimulates ATP hydrolysis in both cis and trans configurations.

Biochemistry 2014 Nov 11;53(46):7148-59. Epub 2014 Nov 11.

Department of Biochemistry, ‡Mitochondrial Protein Partnership, Center for Eukaryotic Structural Genomics, and §National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/bi5010552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245983PMC
November 2014

Automated cell-free protein production methods for structural studies.

Methods Mol Biol 2014 ;1140:117-35

Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI, 53706, USA.

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http://dx.doi.org/10.1007/978-1-4939-0354-2_9DOI Listing
October 2014

The Protein Data Bank archive as an open data resource.

J Comput Aided Mol Des 2014 Oct 26;28(10):1009-14. Epub 2014 Jul 26.

RCSB PDB, Department of Chemistry and Chemical Biology and Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA,

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http://search.proquest.com/openview/bf8630979c44160c73531082
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http://link.springer.com/10.1007/s10822-014-9770-y
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http://dx.doi.org/10.1007/s10822-014-9770-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196035PMC
October 2014

Response to On prompt update of literature references in the Protein Data Bank.

Acta Crystallogr D Biol Crystallogr 2014 Oct 30;70(Pt 10):2780. Epub 2014 Sep 30.

BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1107/S1399004714020513DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4984264PMC
October 2014

pH-induced conformational change of IscU at low pH correlates with protonation/deprotonation of two conserved histidine residues.

Biochemistry 2014 Aug 4;53(32):5290-7. Epub 2014 Aug 4.

Biophysics Graduate Program, ‡Biochemistry Department, and §National Magnetic Resonance Facility at Madison, Biochemistry Department, University of Wisconsin-Madison , Madison, Wisconsin 53715, United States.

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http://dx.doi.org/10.1021/bi500313tDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4139155PMC
August 2014

Nucleotide-dependent interactions within a specialized Hsp70/Hsp40 complex involved in Fe-S cluster biogenesis.

J Am Chem Soc 2014 Aug 6;136(33):11586-9. Epub 2014 Aug 6.

Mitochondrial Protein Partnership, Center for Eukaryotic Structural Genomics, and ‡Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/ja5055252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4140450PMC
August 2014

Cell-free protein synthesis for functional and structural studies.

Methods Mol Biol 2014 ;1091:161-78

Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.

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http://link.springer.com/10.1007/978-1-62703-691-7_11
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http://dx.doi.org/10.1007/978-1-62703-691-7_11DOI Listing
June 2014

Role of IscX in iron-sulfur cluster biogenesis in Escherichia coli.

J Am Chem Soc 2014 Jun 21;136(22):7933-42. Epub 2014 May 21.

Mitochondrial Protein Partnership, Center for Eukaryotic Structural Genomics and ‡Department of Biochemistry, University of Wisconsin , 433 Babcock Drive, Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/ja501260hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063190PMC
June 2014

Molecular insights into the recognition of N-terminal histone modifications by the BRPF1 bromodomain.

J Mol Biol 2014 Apr 12;426(8):1661-76. Epub 2013 Dec 12.

Department of Pharmaceutical Sciences, Albany College of Pharmacy and Health Sciences, Colchester, VT 05446, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2013.12.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3969779PMC
April 2014

Metabolic Evidence of Diminished Lipid Oxidation in Women With Polycystic Ovary Syndrome.

Curr Metabolomics 2014 ;2(4):269-278

National Magnetic Resonance Facility at Madison, UW-Madison, 433 Babcock Drive, Madison WI 53706, USA ; Department of Biochemistry, UW-Madison, 433 Babcock Drive, Madison WI 53706, USA ; Department of Nutritional and Human Health Sciences, Texas Tech University, 1301 Akron Ave, Lubbock, TX, 79409, USA.

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http://dx.doi.org/10.2174/2213235X01666131203230512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3994884PMC
January 2014

Dosage Effects of Salt and pH Stresses on as Monitored Metabolites by Using Two Dimensional NMR Spectroscopy.

Bull Korean Chem Soc 2013 Dec;34(12):3602-3608

Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.5012/bkcs.2013.34.12.3602DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4311725PMC
December 2013

Comment on timely deposition of macromolecular structures is necessary for peer review by Joosten et al. (2013).

Acta Crystallogr D Biol Crystallogr 2013 Dec 19;69(Pt 12):2296. Epub 2013 Nov 19.

Department of Chemistry & Chemical Biology, Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1107/S0907444913029168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852647PMC
December 2013

Comment on on the propagation of errors by Jaskolski (2013).

Acta Crystallogr D Biol Crystallogr 2013 Dec 19;69(Pt 12):2297. Epub 2013 Nov 19.

Department of Chemistry & Chemical Biology, Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1107/S090744491302917XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852648PMC
December 2013

Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers.

J Magn Reson 2013 Nov 30;236:83-8. Epub 2013 Aug 30.

National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA; Biochemistry Department, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmr.2013.08.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3858185PMC
November 2013

How community has shaped the Protein Data Bank.

Structure 2013 Sep;21(9):1485-91

RCSB PDB, Center for Integrative Proteomics Research and Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ USA 08854. Electronic address:

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http://dx.doi.org/10.1016/j.str.2013.07.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4435976PMC
September 2013

Recommendations of the wwPDB NMR Validation Task Force.

Structure 2013 Sep;21(9):1563-70

Center for Advanced Biotechnology and Medicine, Department of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA; Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address:

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http://dx.doi.org/10.1016/j.str.2013.07.021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3884077PMC
September 2013

Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein.

Proteins 2013 Jun 25;81(6):919-25. Epub 2013 Feb 25.

National Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.

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http://dx.doi.org/10.1002/prot.24259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3982881PMC
June 2013

NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers.

Metabolomics 2013 Jun 4;9(3):558-563. Epub 2013 Jan 4.

National Magnetic Resonance Facility at Madison, Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison, WI 53706 USA.

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http://dx.doi.org/10.1007/s11306-012-0490-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651530PMC
June 2013

[2Fe-2S]-ferredoxin binds directly to cysteine desulfurase and supplies an electron for iron-sulfur cluster assembly but is displaced by the scaffold protein or bacterial frataxin.

J Am Chem Soc 2013 Jun 20;135(22):8117-20. Epub 2013 May 20.

Department of Biochemistry and ‡Center for Eukaryotic Structural Genomics, University of Wisconsin , Madison, Wisconsin 53706, United States.

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http://dx.doi.org/10.1021/ja401950aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3677232PMC
June 2013

Electron transfer mechanism of the Rieske protein from Thermus thermophilus from solution nuclear magnetic resonance investigations.

Biochemistry 2013 Apr 15;52(17):2862-73. Epub 2013 Apr 15.

Graduate Program in Biophysics, University of Wisconsin, Madison, WI 53706, USA.

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http://dx.doi.org/10.1021/bi400296cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3686548PMC
April 2013

Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and region-of-interest (ROI) segmentation of solution-state 2D 1H-13C NMR spectra.

Biotechnol Biofuels 2013 Apr 26;6(1):45. Epub 2013 Apr 26.

DOE Great Lakes Bioenergy Research Center, The Wisconsin Energy Institute, 1552 University Avenue, Madison, WI, 53726, USA.

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http://dx.doi.org/10.1186/1754-6834-6-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3681564PMC
April 2013

The future of the Protein Data Bank.

Biopolymers 2013 Mar 29;99(3):218-22. Epub 2012 Sep 29.

RCSB PDB, Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

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http://doi.wiley.com/10.1002/bip.22132
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http://dx.doi.org/10.1002/bip.22132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684242PMC
March 2013

ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy.

Bioinformatics 2013 Feb 7;29(4):515-7. Epub 2012 Dec 7.

National Magnetics Resonance Facility at Madison, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570218PMC
February 2013

Utilization of protein intrinsic disorder knowledge in structural proteomics.

Biochim Biophys Acta 2013 Feb 8;1834(2):487-98. Epub 2012 Dec 8.

Center for Computational Biology and Bioinformatics, Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA.

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http://dx.doi.org/10.1016/j.bbapap.2012.12.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951342PMC
February 2013

Biophysical characterization of α-synuclein and its controversial structure.

Intrinsically Disord Proteins 2013 Jan 1;1(1):18-39. Epub 2013 Apr 1.

Biochemistry Department; University of Wisconsin-Madison; Madison, WI USA ; National Magnetic Resonance Facility at Madison; University of Wisconsin-Madison; Madison, WI USA.

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http://dx.doi.org/10.4161/idp.26255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3908606PMC
January 2013

Databases and Software for NMR-Based Metabolomics.

Curr Metabolomics 2013 ;1(1)

Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Drive, Madison WI 53706, USA.

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http://dx.doi.org/10.2174/2213235X11301010028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3832261PMC
January 2013

Metamorphic protein IscU changes conformation by cis-trans isomerizations of two peptidyl-prolyl peptide bonds.

Biochemistry 2012 Dec 15;51(48):9595-602. Epub 2012 Nov 15.

Graduate Program in Biophysics, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://pubs.acs.org/doi/10.1021/bi301413y
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http://dx.doi.org/10.1021/bi301413yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3567208PMC
December 2012

Tracing Metabolite Footsteps of Along the Time Course of Recombinant Protein Expression by Two-Dimensional NMR Spectroscopy.

Bull Korean Chem Soc 2012 Dec;33(12):4041-4046

Department of Chemistry and Institute for Chemical Biology, Sejong University, Seoul 143-747, Korea.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3686544PMC
http://dx.doi.org/10.5012/bkcs.2012.33.12.4041DOI Listing
December 2012

In support of the BMRB.

Nat Struct Mol Biol 2012 Sep;19(9):854-60

University of Wisconsin-Madison, Madison, Wisconsin, USA.

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http://dx.doi.org/10.1038/nsmb.2371DOI Listing
September 2012