John F Baines

John F Baines

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John F Baines

John F Baines

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Std fimbriae-fucose interaction increases Salmonella-induced intestinal inflammation and prolongs colonization.

PLoS Pathog 2019 Jul 22;15(7):e1007915. Epub 2019 Jul 22.

Institute of Medical Microbiology and Hospital Epidemiology, Hannover Medical School and German Center for Infection Research (DZIF), Hannover, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1007915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6675130PMC
July 2019

Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis.

Cell Host Microbe 2019 05 18;25(5):681-694.e8. Epub 2019 Apr 18.

Max-von-Pettenkofer Institute, LMU Munich, Pettenkoferstr. 9a, 80336 Munich, Germany; German Center for Infection Research (DZIF), partner site LMU Munich, 80336 Munich, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19313128193015
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http://dx.doi.org/10.1016/j.chom.2019.03.004DOI Listing
May 2019

The Impact of Starvation on the Microbiome and Gut-Brain Interaction in Anorexia Nervosa.

Front Endocrinol (Lausanne) 2019 12;10:41. Epub 2019 Feb 12.

Department of Child and Adolescent Psychiatry, Psychotherapy and Psychosomatics, University Hospital, RWTH University Aachen, Aachen, Germany.

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https://www.frontiersin.org/article/10.3389/fendo.2019.00041
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http://dx.doi.org/10.3389/fendo.2019.00041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6379250PMC
February 2019

Selection of validated hypervariable regions is crucial in 16S-based microbiota studies of the female genital tract.

Sci Rep 2018 Jun 26;8(1):9678. Epub 2018 Jun 26.

Department of Infectious Diseases and Microbiology, University of Luebeck, 23538, Luebeck, Germany.

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http://dx.doi.org/10.1038/s41598-018-27757-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6018735PMC
June 2018

A distinct cutaneous microbiota profile in autoimmune bullous disease patients.

Exp Dermatol 2017 12 29;26(12):1221-1227. Epub 2017 Aug 29.

Lübeck Institute of Experimental Dermatology (LIED), University of Lübeck, Lübeck, Germany.

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http://doi.wiley.com/10.1111/exd.13357
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http://dx.doi.org/10.1111/exd.13357DOI Listing
December 2017

Gut microbiota in Parkinson disease in a northern German cohort.

Brain Res 2017 07 12;1667:41-45. Epub 2017 May 12.

Department of Neurology, Kiel University, Kiel, Germany.

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http://dx.doi.org/10.1016/j.brainres.2017.04.019DOI Listing
July 2017

Improved detection of gene-microbe interactions in the mouse skin microbiota using high-resolution QTL mapping of 16S rRNA transcripts.

Microbiome 2017 06 6;5(1):59. Epub 2017 Jun 6.

Max Planck Institute for Evolutionary Biology, August-Thienemann-Str. 2, 24306, Plön, Germany.

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http://dx.doi.org/10.1186/s40168-017-0275-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461731PMC
June 2017

Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome.

PLoS Comput Biol 2017 Jun 22;13(6):e1005361. Epub 2017 Jun 22.

Computational Systems Biology, Department of Life Sciences and Chemistry, Jacobs University Bremen, Campus Ring 1, D-28759 Bremen, Germany.

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http://dx.doi.org/10.1371/journal.pcbi.1005361DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5480827PMC
June 2017

Stool frequency is associated with gut microbiota composition.

Gut 2017 03 28;66(3):559-560. Epub 2016 Apr 28.

Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.1136/gutjnl-2016-311935DOI Listing
March 2017

Spatial and Temporal Dynamics of Pacific Oyster Hemolymph Microbiota across Multiple Scales.

Front Microbiol 2016 31;7:1367. Epub 2016 Aug 31.

Coastal Ecology, Wadden Sea Station Sylt, Alfred Wegener Institute - Helmholtz Centre for Polar and Marine Research List auf Sylt, Germany.

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http://dx.doi.org/10.3389/fmicb.2016.01367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5006416PMC
September 2016

Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities.

Int J Med Microbiol 2016 Aug 15;306(5):343-355. Epub 2016 Mar 15.

Max Planck Institute for Evolutionary Biology, Evolutionary Genomics, August-Thienemann-Str. 2, 24306, Plön, Germany; Institute for Experimental Medicine, Evolutionary Genomics, Christian-Albrechts-University of Kiel, Arnold-Heller-Str. 3, Haus 17, 24105 Kiel, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.ijmm.2016.03.004DOI Listing
August 2016

The role of tissue-specific microbiota in initial establishment success of Pacific oysters.

Environ Microbiol 2016 Mar 27;18(3):970-87. Epub 2016 Jan 27.

Helmholtz Centre for Polar and Marine Research, Alfred Wegener Institute, Coastal Ecology, Wadden Sea Station Sylt, List, Sylt, Germany.

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http://dx.doi.org/10.1111/1462-2920.13163DOI Listing
March 2016

Geographical patterns of the standing and active human gut microbiome in health and IBD.

Gut 2016 Feb 7;65(2):238-48. Epub 2015 Jan 7.

Department of General Internal Medicine, Christian-Albrechts-University of Kiel, University Hospital Schleswig-Holstein, Kiel, Germany.

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http://dx.doi.org/10.1136/gutjnl-2014-308341DOI Listing
February 2016

Composition of Bacterial Communities Associated with Aurelia aurita Changes with Compartment, Life Stage, and Population.

Appl Environ Microbiol 2015 Sep 26;81(17):6038-52. Epub 2015 Jun 26.

Institute for General Microbiology, Christian Albrecht University Kiel, Kiel, Germany

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http://dx.doi.org/10.1128/AEM.01601-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551246PMC
September 2015

Expression of the Blood-Group-Related Gene B4galnt2 Alters Susceptibility to Salmonella Infection.

PLoS Pathog 2015 Jul 2;11(7):e1005008. Epub 2015 Jul 2.

Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Kiel, Germany; Models of Inflammation, Research Center Borstel, Borstel, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1005008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489644PMC
July 2015

Systemic immunity shapes the oral microbiome and susceptibility to bisphosphonate-associated osteonecrosis of the jaw.

J Transl Med 2015 Jul 4;13:212. Epub 2015 Jul 4.

Institute of Immunology, Christian-Albrechts University Kiel, Arnold-Heller-Strasse 3, Bldg. 17, 24105, Kiel, Germany.

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http://dx.doi.org/10.1186/s12967-015-0568-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4490596PMC
July 2015

Analysis of intestinal microbiota in hybrid house mice reveals evolutionary divergence in a vertebrate hologenome.

Nat Commun 2015 Mar 4;6:6440. Epub 2015 Mar 4.

1] Max Planck Institute for Evolutionary Biology, August-Thienemann-Strasse 2, D-24306 Plön, Germany [2] Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Arnold-Heller-Strasse 3, D-24105 Kiel, Germany.

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http://dx.doi.org/10.1038/ncomms7440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4366507PMC
March 2015

Type I interferon signalling in the intestinal epithelium affects Paneth cells, microbial ecology and epithelial regeneration.

Gut 2014 Dec 20;63(12):1921-31. Epub 2014 Feb 20.

Division of Gastroenterology & Hepatology, Department of Medicine, University of Cambridge, Cambridge, UK Department of Medicine II, Innsbruck Medical University, Innsbruck, Austria.

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http://dx.doi.org/10.1136/gutjnl-2013-305863DOI Listing
December 2014

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice.

Proc Natl Acad Sci U S A 2014 Jul 27;111(26):E2703-10. Epub 2014 May 27.

Max Planck Institute for Evolutionary Biology, D-24306 Plön, Germany;Institute for Experimental Medicine and

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http://dx.doi.org/10.1073/pnas.1402342111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4084472PMC
July 2014

Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering.

Nat Commun 2013 ;4:2462

1] Max Planck Institute for Evolutionary Biology, August-Thienemann-Street 2, D-24306 Plön, Germany [2] Department of Dermatology, University of Lübeck, Ratzeburger Allee 160, D-23538 Lübeck, Germany.

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http://dx.doi.org/10.1038/ncomms3462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3778513PMC
April 2014

Draft Genome Sequences of 11 Staphylococcus epidermidis Strains Isolated from Wild Mouse Species.

Genome Announc 2014 Jan 16;2(1). Epub 2014 Jan 16.

Max Planck Institute for Evolutionary Biology, Plön, Germany.

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http://dx.doi.org/10.1128/genomeA.01148-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894276PMC
January 2014

Distinct antimicrobial peptide expression determines host species-specific bacterial associations.

Proc Natl Acad Sci U S A 2013 Sep 3;110(39):E3730-8. Epub 2013 Sep 3.

Zoological Institute, Christian-Albrechts University of Kiel, 24098 Kiel, Germany.

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http://dx.doi.org/10.1073/pnas.1304960110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3785777PMC
September 2013

Compounds associated with algal surfaces mediate epiphytic colonization of the marine macroalga Fucus vesiculosus.

FEMS Microbiol Ecol 2013 May 5;84(2):411-20. Epub 2013 Feb 5.

Centre for Marine Bio-Innovation, University of New South Wales, Sydney, NSW, Australia.

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http://dx.doi.org/10.1111/1574-6941.12071DOI Listing
May 2013

Bacterial colonization of Hydra hatchlings follows a robust temporal pattern.

ISME J 2013 Apr 24;7(4):781-90. Epub 2013 Jan 24.

Zoological Institute, Christian-Albrechts University Kiel, Kiel, Germany.

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http://dx.doi.org/10.1038/ismej.2012.156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3603398PMC
April 2013

The role of biogeography in shaping diversity of the intestinal microbiota in house mice.

Mol Ecol 2013 Apr 7;22(7):1904-16. Epub 2013 Feb 7.

Max Planck Institute for Evolutionary Biology, Plön, Germany.

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http://dx.doi.org/10.1111/mec.12206DOI Listing
April 2013

MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers.

Proc Natl Acad Sci U S A 2012 Nov 29;109(47):19374-9. Epub 2012 Oct 29.

Zoological Institute, Christian Albrechts University, 24098 Kiel, Germany.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1213110109
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http://dx.doi.org/10.1073/pnas.1213110109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3511086PMC
November 2012

Long-term balancing selection at the blood group-related gene B4galnt2 in the genus Mus (Rodentia; Muridae).

Mol Biol Evol 2011 Nov 7;28(11):2999-3003. Epub 2011 Jun 7.

Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Kiel, Germany.

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http://dx.doi.org/10.1093/molbev/msr150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357812PMC
November 2011

Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype.

Proc Natl Acad Sci U S A 2011 Nov 8;108(47):19030-5. Epub 2011 Nov 8.

Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, D-24105 Kiel, Germany.

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http://dx.doi.org/10.1073/pnas.1106408108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3223430PMC
November 2011

Nod2 is essential for temporal development of intestinal microbial communities.

Gut 2011 Oct 18;60(10):1354-62. Epub 2011 Mar 18.

Institute for Clinical Molecular Biology (IKMB), Christian-Albrechts-University (CAU) Kiel, Germany.

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http://gut.bmj.com/content/60/10/1354.full.pdf
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http://dx.doi.org/10.1136/gut.2010.216259DOI Listing
October 2011

Molecular evolution of sex-biased genes in the Drosophila ananassae subgroup.

BMC Evol Biol 2009 Dec 16;9:291. Epub 2009 Dec 16.

Department of Biology, University of Munich (LMU), Munich, Germany.

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http://dx.doi.org/10.1186/1471-2148-9-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2809073PMC
December 2009

The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila.

Mol Biol Evol 2009 Mar 6;26(3):691-8. Epub 2009 Jan 6.

Department of Biology, University of Munich, Germany.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msn297DOI Listing
March 2009

Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila.

Mol Biol Evol 2008 Aug 13;25(8):1639-50. Epub 2008 May 13.

Section of Evolutionary Biology, Department of Biology, University of Munich, 82152 Munich, Germany.

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http://dx.doi.org/10.1093/molbev/msn111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2727381PMC
August 2008

Evolution of mating isolation between populations of Drosophila ananassae.

Mol Ecol 2008 Jun 2;17(11):2706-21. Epub 2008 May 2.

Biology Department, University of North Carolina Greensboro, Greensboro, NC 27402, USA.

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http://dx.doi.org/10.1111/j.1365-294X.2008.03770.xDOI Listing
June 2008

X chromosome inactivation during Drosophila spermatogenesis.

PLoS Biol 2007 Oct;5(10):e273

Department of Biology II, University of Munich, Planegg-Martinsried, Germany.

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http://dx.doi.org/10.1371/journal.pbio.0050273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2001211PMC
October 2007

Reduced X-linked diversity in derived populations of house mice.

Genetics 2007 Apr 7;175(4):1911-21. Epub 2007 Feb 7.

Institute for Genetics, Department of Evolutionary Genetics, University of Cologne, 50674 Cologne, Germany.

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http://dx.doi.org/10.1534/genetics.106.069419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855135PMC
April 2007

The role of natural selection in genetic differentiation of worldwide populations of Drosophila ananassae.

Genetics 2004 Dec;168(4):1987-98

Department of Biology II, Section of Evolutionary Biology, University of Munich, 82152 Planegg-Martinsried, Germany.

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http://dx.doi.org/10.1534/genetics.104.027482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448739PMC
December 2004

Pleiotropic effect of disrupting a conserved sequence involved in a long-range compensatory interaction in the Drosophila Adh gene.

Genetics 2004 Jan;166(1):237-42

Department of Biology II, Section of Evolutionary Biology, University of Munich, 80333 Munich, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1470667PMC
January 2004