Publications by authors named "John E Collins"

19Publications

The gene regulatory basis of genetic compensation during neural crest induction.

PLoS Genet 2019 06 14;15(6):e1008213. Epub 2019 Jun 14.

Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1008213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6594659PMC
June 2019

The zebrafish reference genome sequence and its relationship to the human genome.

Authors:
Kerstin Howe Matthew D Clark Carlos F Torroja James Torrance Camille Berthelot Matthieu Muffato John E Collins Sean Humphray Karen McLaren Lucy Matthews Stuart McLaren Ian Sealy Mario Caccamo Carol Churcher Carol Scott Jeffrey C Barrett Romke Koch Gerd-Jörg Rauch Simon White William Chow Britt Kilian Leonor T Quintais José A Guerra-Assunção Yi Zhou Yong Gu Jennifer Yen Jan-Hinnerk Vogel Tina Eyre Seth Redmond Ruby Banerjee Jianxiang Chi Beiyuan Fu Elizabeth Langley Sean F Maguire Gavin K Laird David Lloyd Emma Kenyon Sarah Donaldson Harminder Sehra Jeff Almeida-King Jane Loveland Stephen Trevanion Matt Jones Mike Quail Dave Willey Adrienne Hunt John Burton Sarah Sims Kirsten McLay Bob Plumb Joy Davis Chris Clee Karen Oliver Richard Clark Clare Riddle David Elliot David Eliott Glen Threadgold Glenn Harden Darren Ware Sharmin Begum Beverley Mortimore Beverly Mortimer Giselle Kerry Paul Heath Benjamin Phillimore Alan Tracey Nicole Corby Matthew Dunn Christopher Johnson Jonathan Wood Susan Clark Sarah Pelan Guy Griffiths Michelle Smith Rebecca Glithero Philip Howden Nicholas Barker Christine Lloyd Christopher Stevens Joanna Harley Karen Holt Georgios Panagiotidis Jamieson Lovell Helen Beasley Carl Henderson Daria Gordon Katherine Auger Deborah Wright Joanna Collins Claire Raisen Lauren Dyer Kenric Leung Lauren Robertson Kirsty Ambridge Daniel Leongamornlert Sarah McGuire Ruth Gilderthorp Coline Griffiths Deepa Manthravadi Sarah Nichol Gary Barker Siobhan Whitehead Michael Kay Jacqueline Brown Clare Murnane Emma Gray Matthew Humphries Neil Sycamore Darren Barker David Saunders Justene Wallis Anne Babbage Sian Hammond Maryam Mashreghi-Mohammadi Lucy Barr Sancha Martin Paul Wray Andrew Ellington Nicholas Matthews Matthew Ellwood Rebecca Woodmansey Graham Clark James D Cooper James Cooper Anthony Tromans Darren Grafham Carl Skuce Richard Pandian Robert Andrews Elliot Harrison Andrew Kimberley Jane Garnett Nigel Fosker Rebekah Hall Patrick Garner Daniel Kelly Christine Bird Sophie Palmer Ines Gehring Andrea Berger Christopher M Dooley Zübeyde Ersan-Ürün Cigdem Eser Horst Geiger Maria Geisler Lena Karotki Anette Kirn Judith Konantz Martina Konantz Martina Oberländer Silke Rudolph-Geiger Mathias Teucke Christa Lanz Günter Raddatz Kazutoyo Osoegawa Baoli Zhu Amanda Rapp Sara Widaa Cordelia Langford Fengtang Yang Stephan C Schuster Nigel P Carter Jennifer Harrow Zemin Ning Javier Herrero Steve M J Searle Anton Enright Robert Geisler Ronald H A Plasterk Charles Lee Monte Westerfield Pieter J de Jong Leonard I Zon John H Postlethwait Christiane Nüsslein-Volhard Tim J P Hubbard Hugues Roest Crollius Jane Rogers Derek L Stemple

Nature 2013 Apr 17;496(7446):498-503. Epub 2013 Apr 17.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature12111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703927PMC
April 2013

Incorporating RNA-seq data into the zebrafish Ensembl genebuild.

Genome Res 2012 Oct 12;22(10):2067-78. Epub 2012 Jul 12.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom.

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http://dx.doi.org/10.1101/gr.137901.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3460200PMC
October 2012

FRT-seq: amplification-free, strand-specific transcriptome sequencing.

Nat Methods 2010 Feb 17;7(2):130-2. Epub 2010 Jan 17.

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1038/nmeth.1417DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861772PMC
February 2010

The characteristics of human genes: analysis of human chromosome 22.

Comp Funct Genomics 2003 ;4(6):635-46

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1002/cfg.335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447302PMC
June 2010

Finishing the finished human chromosome 22 sequence.

Genome Biol 2008 13;9(5):R78. Epub 2008 May 13.

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1186/gb-2008-9-5-r78DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2441464PMC
July 2008

Subcellular localization of intracellular human proteins by construction of tagged fusion proteins and transient expression in COS-7 Cells.

Authors:
John E Collins

Methods Mol Biol 2008 ;439:353-67

Wellcome Trust Sanger Institute, Cambridge, UK.

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http://dx.doi.org/10.1007/978-1-59745-188-8_24DOI Listing
June 2008

Replication timing of the human genome.

Hum Mol Genet 2004 Jan 25;13(2):191-202. Epub 2003 Nov 25.

The Welcome Trust Sanger Institute, Welcome Genome Campus, Cambridge, UK.

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http://dx.doi.org/10.1093/hmg/ddh016DOI Listing
January 2004

Gene annotation: prediction and testing.

Annu Rev Genomics Hum Genet 2003 ;4:69-88

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.

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http://dx.doi.org/10.1146/annurev.genom.4.070802.110300DOI Listing
December 2003

Reevaluating human gene annotation: a second-generation analysis of chromosome 22.

Genome Res 2003 Jan;13(1):27-36

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1101/gr.695703DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430954PMC
January 2003