John D McPherson

John D McPherson

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John D McPherson

Publications by authors named "John D McPherson"

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Next-Generation Sequencing Technologies.

Cold Spring Harb Perspect Med 2019 Nov 1;9(11). Epub 2019 Nov 1.

Institute for Genomic Medicine at Nationwide Children's Hospital, The Ohio State University College of Medicine, The Institute for Genomic Medicine, Columbus, Ohio 43205.

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http://dx.doi.org/10.1101/cshperspect.a036798DOI Listing
November 2019

Future Promises and Concerns of Ubiquitous Next-Generation Sequencing.

Cold Spring Harb Perspect Med 2019 Sep 3;9(9). Epub 2019 Sep 3.

University of California Davis Comprehensive Cancer Center, Sacramento, California 95817.

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http://perspectivesinmedicine.cshlp.org/lookup/doi/10.1101/c
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http://dx.doi.org/10.1101/cshperspect.a025783DOI Listing
September 2019

Improving classification of melanocytic nevi: Association of BRAF V600E expression with distinct histomorphologic features.

J Am Acad Dermatol 2018 Aug 11;79(2):221-229. Epub 2018 Apr 11.

Department of Dermatology, University of California, Davis, Sacramento and Davis, California; Department of Pathology and Laboratory Medicine, University of California, Davis, Sacramento and Davis, California.

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http://dx.doi.org/10.1016/j.jaad.2018.03.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6090558PMC
August 2018

Prediction of acute myeloid leukaemia risk in healthy individuals.

Nature 2018 07 9;559(7714):400-404. Epub 2018 Jul 9.

Princess Margaret Cancer Centre, University Health Network (UHN), Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/s41586-018-0317-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6485381PMC
July 2018

Microscopy with ultraviolet surface excitation for rapid slide-free histology.

Nat Biomed Eng 2017 4;1:957-966. Epub 2017 Dec 4.

FF, ZTH, MT, AT, JK, ADB, ML, JB, RL: Department of Pathology and Laboratory Medicine, UC Davis Medical Center, Sacramento, CA 95817; JDM: Department of Biochemistry and Molecular Medicine, UC Davis Medical Center, Sacramento, CA 95817; SGD: Lawrence Livermore National Laboratory, Livermore, CA 94551 (Current address, University of Rochester, Rochester, NY 14623).

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6223324PMC
December 2017

Microscopy with ultraviolet surface excitation for rapid slide-free histology.

Nat Biomed Eng 2017 12 4;1(12):957-966. Epub 2017 Dec 4.

Department of Pathology and Laboratory Medicine, University of California Davis Medical Center, Sacramento, CA, USA.

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http://dx.doi.org/10.1038/s41551-017-0165-yDOI Listing
December 2017

ISOWN: accurate somatic mutation identification in the absence of normal tissue controls.

Genome Med 2017 06 29;9(1):59. Epub 2017 Jun 29.

Informatics and Bio-computing, Ontario Institute for Cancer Research, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1186/s13073-017-0446-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5490163PMC
June 2017

Coming of age: ten years of next-generation sequencing technologies.

Nat Rev Genet 2016 05;17(6):333-51

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

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http://www.nature.com/articles/nrg.2016.49
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http://dx.doi.org/10.1038/nrg.2016.49DOI Listing
May 2016

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncomms10001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682041PMC
December 2015

Optimization of miRNA-seq data preprocessing.

Brief Bioinform 2015 Nov 17;16(6):950-63. Epub 2015 Apr 17.

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http://dx.doi.org/10.1093/bib/bbv019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4652620PMC
November 2015

Spatial genomic heterogeneity within localized, multifocal prostate cancer.

Nat Genet 2015 Jul 25;47(7):736-45. Epub 2015 May 25.

1] Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada. [2] Ontario Cancer Institute, Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada. [3] Department of Radiation Oncology, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/ng.3315DOI Listing
July 2015

A two-dimensional pooling strategy for rare variant detection on next-generation sequencing platforms.

PLoS One 2014 11;9(4):e93455. Epub 2014 Apr 11.

Genome Technologies, Ontario Institute for Cancer Research, Toronto, Ontario, Canada; Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093455PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3984111PMC
December 2014

Use of Sequenom sample ID Plus® SNP genotyping in identification of FFPE tumor samples.

PLoS One 2014 13;9(2):e88163. Epub 2014 Feb 13.

Department of Genome Technologies, Ontario Institute for Cancer Research, Toronto, Canada ; Department of Medical Biophysics, University of Toronto, Toronto, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0088163PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3923782PMC
October 2014

Genomic testing in cancer: patient knowledge, attitudes, and expectations.

Cancer 2014 Oct 24;120(19):3066-73. Epub 2014 Jun 24.

Division of Medical Oncology, Department of Medicine, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1002/cncr.28807DOI Listing
October 2014

SeqControl: process control for DNA sequencing.

Nat Methods 2014 Oct 31;11(10):1071-5. Epub 2014 Aug 31.

1] Informatics &Biocomputing Platform, Ontario Institute for Cancer Research, Toronto, Ontario, Canada. [2] Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada. [3] Department of Pharmacology and Toxicology, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/nmeth.3094DOI Listing
October 2014

A defining decade in DNA sequencing.

Authors:
John D McPherson

Nat Methods 2014 Oct;11(10):1003-5

Genome Technologies Program at the Ontario Institute for Cancer Research, Toronto, Canada.

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http://dx.doi.org/10.1038/nmeth.3106DOI Listing
October 2014

Next-generation sequencing identifies rare variants associated with Noonan syndrome.

Proc Natl Acad Sci U S A 2014 Aug 21;111(31):11473-8. Epub 2014 Jul 21.

Department of Genetics, Harvard Medical School, Boston, MA 02115;Department of Medicine, Division of Genetics, Brigham and Women's Hospital, Boston, MA 02115;

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http://dx.doi.org/10.1073/pnas.1324128111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4128129PMC
August 2014

Genomic support for a moa-tinamou clade and adaptive morphological convergence in flightless ratites.

Mol Biol Evol 2014 Jul 13;31(7):1686-96. Epub 2014 May 13.

Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada.

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http://dx.doi.org/10.1093/molbev/msu153DOI Listing
July 2014

Robust global microRNA expression profiling using next-generation sequencing technologies.

Lab Invest 2014 Mar 20;94(3):350-8. Epub 2014 Jan 20.

1] Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada [2] Genome Technologies, Ontario Institute for Cancer Research, Toronto, ON, Canada [3] Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.

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http://dx.doi.org/10.1038/labinvest.2013.157DOI Listing
March 2014

Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells.

Stem Cell Reports 2014 Jan 2;2(1):44-51. Epub 2014 Jan 2.

Ontario Institute for Cancer Research, 101 College Street, Toronto, Canada M5G 0A3 ; Department of Medical Biophysics, University of Toronto, Toronto, Canada M5G 2M9.

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http://dx.doi.org/10.1016/j.stemcr.2013.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916753PMC
January 2014

Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes.

Authors:
Andrew V Biankin Nicola Waddell Karin S Kassahn Marie-Claude Gingras Lakshmi B Muthuswamy Amber L Johns David K Miller Peter J Wilson Ann-Marie Patch Jianmin Wu David K Chang Mark J Cowley Brooke B Gardiner Sarah Song Ivon Harliwong Senel Idrisoglu Craig Nourse Ehsan Nourbakhsh Suzanne Manning Shivangi Wani Milena Gongora Marina Pajic Christopher J Scarlett Anthony J Gill Andreia V Pinho Ilse Rooman Matthew Anderson Oliver Holmes Conrad Leonard Darrin Taylor Scott Wood Qinying Xu Katia Nones J Lynn Fink Angelika Christ Tim Bruxner Nicole Cloonan Gabriel Kolle Felicity Newell Mark Pinese R Scott Mead Jeremy L Humphris Warren Kaplan Marc D Jones Emily K Colvin Adnan M Nagrial Emily S Humphrey Angela Chou Venessa T Chin Lorraine A Chantrill Amanda Mawson Jaswinder S Samra James G Kench Jessica A Lovell Roger J Daly Neil D Merrett Christopher Toon Krishna Epari Nam Q Nguyen Andrew Barbour Nikolajs Zeps Nipun Kakkar Fengmei Zhao Yuan Qing Wu Min Wang Donna M Muzny William E Fisher F Charles Brunicardi Sally E Hodges Jeffrey G Reid Jennifer Drummond Kyle Chang Yi Han Lora R Lewis Huyen Dinh Christian J Buhay Timothy Beck Lee Timms Michelle Sam Kimberly Begley Andrew Brown Deepa Pai Ami Panchal Nicholas Buchner Richard De Borja Robert E Denroche Christina K Yung Stefano Serra Nicole Onetto Debabrata Mukhopadhyay Ming-Sound Tsao Patricia A Shaw Gloria M Petersen Steven Gallinger Ralph H Hruban Anirban Maitra Christine A Iacobuzio-Donahue Richard D Schulick Christopher L Wolfgang Richard A Morgan Rita T Lawlor Paola Capelli Vincenzo Corbo Maria Scardoni Giampaolo Tortora Margaret A Tempero Karen M Mann Nancy A Jenkins Pedro A Perez-Mancera David J Adams David A Largaespada Lodewyk F A Wessels Alistair G Rust Lincoln D Stein David A Tuveson Neal G Copeland Elizabeth A Musgrove Aldo Scarpa James R Eshleman Thomas J Hudson Robert L Sutherland David A Wheeler John V Pearson John D McPherson Richard A Gibbs Sean M Grimmond

Nature 2012 Nov 24;491(7424):399-405. Epub 2012 Oct 24.

The Kinghorn Cancer Centre, 370 Victoria Street, Darlinghurst, Sydney, New South Wales 2010, Australia.

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http://dx.doi.org/10.1038/nature11547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3530898PMC
November 2012

Cancer genomics: technology, discovery, and translation.

J Clin Oncol 2012 Feb 23;30(6):647-60. Epub 2012 Jan 23.

FRCPC, Princess Margaret Hospital, Drug Development Program, 610 University Ave, Ste 5-718, Toronto, Ontario, M5G 2M9, Canada.

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http://dx.doi.org/10.1200/JCO.2011.39.2316DOI Listing
February 2012

Unraveling the genetics of cancer: genome sequencing and beyond.

Annu Rev Genomics Hum Genet 2011 ;12:407-30

Faculty of Medicine, University of Toronto, Toronto, Ontario M5G 2C4, Canada.

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http://dx.doi.org/10.1146/annurev-genom-082509-141532DOI Listing
October 2011

International network of cancer genome projects.

Authors:
Thomas J Hudson Warwick Anderson Axel Artez Anna D Barker Cindy Bell Rosa R Bernabé M K Bhan Fabien Calvo Iiro Eerola Daniela S Gerhard Alan Guttmacher Mark Guyer Fiona M Hemsley Jennifer L Jennings David Kerr Peter Klatt Patrik Kolar Jun Kusada David P Lane Frank Laplace Lu Youyong Gerd Nettekoven Brad Ozenberger Jane Peterson T S Rao Jacques Remacle Alan J Schafer Tatsuhiro Shibata Michael R Stratton Joseph G Vockley Koichi Watanabe Huanming Yang Matthew M F Yuen Bartha M Knoppers Martin Bobrow Anne Cambon-Thomsen Lynn G Dressler Stephanie O M Dyke Yann Joly Kazuto Kato Karen L Kennedy Pilar Nicolás Michael J Parker Emmanuelle Rial-Sebbag Carlos M Romeo-Casabona Kenna M Shaw Susan Wallace Georgia L Wiesner Nikolajs Zeps Peter Lichter Andrew V Biankin Christian Chabannon Lynda Chin Bruno Clément Enrique de Alava Françoise Degos Martin L Ferguson Peter Geary D Neil Hayes Thomas J Hudson Amber L Johns Arek Kasprzyk Hidewaki Nakagawa Robert Penny Miguel A Piris Rajiv Sarin Aldo Scarpa Tatsuhiro Shibata Marc van de Vijver P Andrew Futreal Hiroyuki Aburatani Mónica Bayés David D L Botwell Peter J Campbell Xavier Estivill Daniela S Gerhard Sean M Grimmond Ivo Gut Martin Hirst Carlos López-Otín Partha Majumder Marco Marra John D McPherson Hidewaki Nakagawa Zemin Ning Xose S Puente Yijun Ruan Tatsuhiro Shibata Michael R Stratton Hendrik G Stunnenberg Harold Swerdlow Victor E Velculescu Richard K Wilson Hong H Xue Liu Yang Paul T Spellman Gary D Bader Paul C Boutros Peter J Campbell Paul Flicek Gad Getz Roderic Guigó Guangwu Guo David Haussler Simon Heath Tim J Hubbard Tao Jiang Steven M Jones Qibin Li Nuria López-Bigas Ruibang Luo Lakshmi Muthuswamy B F Francis Ouellette John V Pearson Xose S Puente Victor Quesada Benjamin J Raphael Chris Sander Tatsuhiro Shibata Terence P Speed Lincoln D Stein Joshua M Stuart Jon W Teague Yasushi Totoki Tatsuhiko Tsunoda Alfonso Valencia David A Wheeler Honglong Wu Shancen Zhao Guangyu Zhou Lincoln D Stein Roderic Guigó Tim J Hubbard Yann Joly Steven M Jones Arek Kasprzyk Mark Lathrop Nuria López-Bigas B F Francis Ouellette Paul T Spellman Jon W Teague Gilles Thomas Alfonso Valencia Teruhiko Yoshida Karen L Kennedy Myles Axton Stephanie O M Dyke P Andrew Futreal Daniela S Gerhard Chris Gunter Mark Guyer Thomas J Hudson John D McPherson Linda J Miller Brad Ozenberger Kenna M Shaw Arek Kasprzyk Lincoln D Stein Junjun Zhang Syed A Haider Jianxin Wang Christina K Yung Anthony Cros Anthony Cross Yong Liang Saravanamuttu Gnaneshan Jonathan Guberman Jack Hsu Martin Bobrow Don R C Chalmers Karl W Hasel Yann Joly Terry S H Kaan Karen L Kennedy Bartha M Knoppers William W Lowrance Tohru Masui Pilar Nicolás Emmanuelle Rial-Sebbag Laura Lyman Rodriguez Catherine Vergely Teruhiko Yoshida Sean M Grimmond Andrew V Biankin David D L Bowtell Nicole Cloonan Anna deFazio James R Eshleman Dariush Etemadmoghadam Brooke B Gardiner Brooke A Gardiner James G Kench Aldo Scarpa Robert L Sutherland Margaret A Tempero Nicola J Waddell Peter J Wilson John D McPherson Steve Gallinger Ming-Sound Tsao Patricia A Shaw Gloria M Petersen Debabrata Mukhopadhyay Lynda Chin Ronald A DePinho Sarah Thayer Lakshmi Muthuswamy Kamran Shazand Timothy Beck Michelle Sam Lee Timms Vanessa Ballin Youyong Lu Jiafu Ji Xiuqing Zhang Feng Chen Xueda Hu Guangyu Zhou Qi Yang Geng Tian Lianhai Zhang Xiaofang Xing Xianghong Li Zhenggang Zhu Yingyan Yu Jun Yu Huanming Yang Mark Lathrop Jörg Tost Paul Brennan Ivana Holcatova David Zaridze Alvis Brazma Lars Egevard Egor Prokhortchouk Rosamonde Elizabeth Banks Mathias Uhlén Anne Cambon-Thomsen Juris Viksna Fredrik Ponten Konstantin Skryabin Michael R Stratton P Andrew Futreal Ewan Birney Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Sancha Martin Jorge S Reis-Filho Andrea L Richardson Christos Sotiriou Hendrik G Stunnenberg Giles Thoms Marc van de Vijver Laura van't Veer Fabien Calvo Daniel Birnbaum Hélène Blanche Pascal Boucher Sandrine Boyault Christian Chabannon Ivo Gut Jocelyne D Masson-Jacquemier Mark Lathrop Iris Pauporté Xavier Pivot Anne Vincent-Salomon Eric Tabone Charles Theillet Gilles Thomas Jörg Tost Isabelle Treilleux Fabien Calvo Paulette Bioulac-Sage Bruno Clément Thomas Decaens Françoise Degos Dominique Franco Ivo Gut Marta Gut Simon Heath Mark Lathrop Didier Samuel Gilles Thomas Jessica Zucman-Rossi Peter Lichter Roland Eils Benedikt Brors Jan O Korbel Andrey Korshunov Pablo Landgraf Hans Lehrach Stefan Pfister Bernhard Radlwimmer Guido Reifenberger Michael D Taylor Christof von Kalle Partha P Majumder Rajiv Sarin T S Rao M K Bhan Aldo Scarpa Paolo Pederzoli Rita A Lawlor Massimo Delledonne Alberto Bardelli Andrew V Biankin Sean M Grimmond Thomas Gress David Klimstra Giuseppe Zamboni Tatsuhiro Shibata Yusuke Nakamura Hidewaki Nakagawa Jun Kusada Tatsuhiko Tsunoda Satoru Miyano Hiroyuki Aburatani Kazuto Kato Akihiro Fujimoto Teruhiko Yoshida Elias Campo Carlos López-Otín Xavier Estivill Roderic Guigó Silvia de Sanjosé Miguel A Piris Emili Montserrat Marcos González-Díaz Xose S Puente Pedro Jares Alfonso Valencia Heinz Himmelbauer Heinz Himmelbaue Victor Quesada Silvia Bea Michael R Stratton P Andrew Futreal Peter J Campbell Anne Vincent-Salomon Andrea L Richardson Jorge S Reis-Filho Marc van de Vijver Gilles Thomas Jocelyne D Masson-Jacquemier Samuel Aparicio Ake Borg Anne-Lise Børresen-Dale Carlos Caldas John A Foekens Hendrik G Stunnenberg Laura van't Veer Douglas F Easton Paul T Spellman Sancha Martin Anna D Barker Lynda Chin Francis S Collins Carolyn C Compton Martin L Ferguson Daniela S Gerhard Gad Getz Chris Gunter Alan Guttmacher Mark Guyer D Neil Hayes Eric S Lander Brad Ozenberger Robert Penny Jane Peterson Chris Sander Kenna M Shaw Terence P Speed Paul T Spellman Joseph G Vockley David A Wheeler Richard K Wilson Thomas J Hudson Lynda Chin Bartha M Knoppers Eric S Lander Peter Lichter Lincoln D Stein Michael R Stratton Warwick Anderson Anna D Barker Cindy Bell Martin Bobrow Wylie Burke Francis S Collins Carolyn C Compton Ronald A DePinho Douglas F Easton P Andrew Futreal Daniela S Gerhard Anthony R Green Mark Guyer Stanley R Hamilton Tim J Hubbard Olli P Kallioniemi Karen L Kennedy Timothy J Ley Edison T Liu Youyong Lu Partha Majumder Marco Marra Brad Ozenberger Jane Peterson Alan J Schafer Paul T Spellman Hendrik G Stunnenberg Brandon J Wainwright Richard K Wilson Huanming Yang

Nature 2010 Apr;464(7291):993-8

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http://dx.doi.org/10.1038/nature08987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902243PMC
April 2010

Next-generation gap.

Authors:
John D McPherson

Nat Methods 2009 Nov;6(11 Suppl):S2-5

Ontario Institute for Cancer Research, Toronto, Ontario, Canada.

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http://www.nature.com/articles/nmeth.f.268
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http://dx.doi.org/10.1038/nmeth.f.268DOI Listing
November 2009

Resources for genetic and genomic studies of Xenopus.

Methods Mol Biol 2006 ;322:1-16

Developmental Biology, Genetics, and Teratology Branch, National Institute of Child Health and Human Development, Rockville, MD, USA.

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http://dx.doi.org/10.1007/978-1-59745-000-3_1DOI Listing
June 2006

Punctuated duplication seeding events during the evolution of human chromosome 2p11.

Genome Res 2005 Jul 17;15(7):914-27. Epub 2005 Jun 17.

Department of Genetics and Center for Human Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1101/gr.3916405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1172035PMC
July 2005

Generation and annotation of the DNA sequences of human chromosomes 2 and 4.

Authors:
Ladeana W Hillier Tina A Graves Robert S Fulton Lucinda A Fulton Kymberlie H Pepin Patrick Minx Caryn Wagner-McPherson Dan Layman Kristine Wylie Mandeep Sekhon Michael C Becker Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Colin Kremitzki Lachlan Oddy Hui Du Hui Sun Holland Bradshaw-Cordum Johar Ali Jason Carter Matt Cordes Anthony Harris Amber Isak Andrew van Brunt Christine Nguyen Feiyu Du Laura Courtney Joelle Kalicki Philip Ozersky Scott Abbott Jon Armstrong Edward A Belter Lauren Caruso Maria Cedroni Marc Cotton Teresa Davidson Anu Desai Glendoria Elliott Thomas Erb Catrina Fronick Tony Gaige William Haakenson Krista Haglund Andrea Holmes Richard Harkins Kyung Kim Scott S Kruchowski Cynthia Madsen Strong Neenu Grewal Ernest Goyea Shunfang Hou Andrew Levy Scott Martinka Kelly Mead Michael D McLellan Rick Meyer Jennifer Randall-Maher Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Neha Shah Sharhonda Swearengen-Shahid Jacqueline Snider Joseph T Strong Johanna Thompson Martin Yoakum Shawn Leonard Charlene Pearman Lee Trani Maxim Radionenko Jason E Waligorski Chunyan Wang Susan M Rock Aye-Mon Tin-Wollam Rachel Maupin Phil Latreille Michael C Wendl Shiaw-Pyng Yang Craig Pohl John W Wallis John Spieth Tamberlyn A Bieri Nicolas Berkowicz Joanne O Nelson John Osborne Li Ding Rekha Meyer Aniko Sabo Yoram Shotland Prashant Sinha Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Thomas A Jones Xinwei She Francesca D Ciccarelli Elisa Izaurralde James Taylor Jeremy Schmutz Richard M Myers David R Cox Xiaoqiu Huang John D McPherson Elaine R Mardis Sandra W Clifton Wesley C Warren Asif T Chinwalla Sean R Eddy Marco A Marra Ivan Ovcharenko Terrence S Furey Webb Miller Evan E Eichler Peer Bork Mikita Suyama David Torrents Robert H Waterston Richard K Wilson

Nature 2005 Apr;434(7034):724-31

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature03466DOI Listing
April 2005

Fosmid-based physical mapping of the Histoplasma capsulatum genome.

Genome Res 2004 Aug;14(8):1603-9

Washington University School of Medicine, Genome Sequencing Center, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1101/gr.2361404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC509269PMC
August 2004

Large-scale RT-PCR recovery of full-length cDNA clones.

Biotechniques 2004 Apr;36(4):690-6, 698-700

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.2144/04364DD03DOI Listing
April 2004

Levodopa-responsive aromatic L-amino acid decarboxylase deficiency.

Ann Neurol 2004 Mar;55(3):435-8

Kimberly H. Courtwright and Joseph W. Summers Institute of Metabolic Disease, Baylor University Medical Center, 3812 Elm Street, Dallas, TX 75226, USA.

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http://dx.doi.org/10.1002/ana.20055DOI Listing
March 2004

A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy.

J Exp Zool B Mol Dev Evol 2003 Dec;300(1):5-22

Department of Biology, Washington University, St. Louis, Missouri 63130, USA.

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http://dx.doi.org/10.1002/jez.b.42DOI Listing
December 2003

A defect in a novel ADAMTS family member is the cause of the belted white-spotting mutation.

Development 2003 Oct;130(19):4665-72

Genetics Division, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02476, USA.

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http://dx.doi.org/10.1242/dev.00668DOI Listing
October 2003

The DNA sequence of human chromosome 7.

Authors:
Ladeana W Hillier Robert S Fulton Lucinda A Fulton Tina A Graves Kymberlie H Pepin Caryn Wagner-McPherson Dan Layman Jason Maas Sara Jaeger Rebecca Walker Kristine Wylie Mandeep Sekhon Michael C Becker Michelle D O'Laughlin Mark E Schaller Ginger A Fewell Kimberly D Delehaunty Tracie L Miner William E Nash Matt Cordes Hui Du Hui Sun Jennifer Edwards Holland Bradshaw-Cordum Johar Ali Stephanie Andrews Amber Isak Andrew Vanbrunt Christine Nguyen Feiyu Du Betty Lamar Laura Courtney Joelle Kalicki Philip Ozersky Lauren Bielicki Kelsi Scott Andrea Holmes Richard Harkins Anthony Harris Cynthia Madsen Strong Shunfang Hou Chad Tomlinson Sara Dauphin-Kohlberg Amy Kozlowicz-Reilly Shawn Leonard Theresa Rohlfing Susan M Rock Aye-Mon Tin-Wollam Amanda Abbott Patrick Minx Rachel Maupin Catrina Strowmatt Phil Latreille Nancy Miller Doug Johnson Jennifer Murray Jeffrey P Woessner Michael C Wendl Shiaw-Pyng Yang Brian R Schultz John W Wallis John Spieth Tamberlyn A Bieri Joanne O Nelson Nicolas Berkowicz Patricia E Wohldmann Lisa L Cook Matthew T Hickenbotham James Eldred Donald Williams Joseph A Bedell Elaine R Mardis Sandra W Clifton Stephanie L Chissoe Marco A Marra Christopher Raymond Eric Haugen Will Gillett Yang Zhou Rose James Karen Phelps Shawn Iadanoto Kerry Bubb Elizabeth Simms Ruth Levy James Clendenning Rajinder Kaul W James Kent Terrence S Furey Robert A Baertsch Michael R Brent Evan Keibler Paul Flicek Peer Bork Mikita Suyama Jeffrey A Bailey Matthew E Portnoy David Torrents Asif T Chinwalla Warren R Gish Sean R Eddy John D McPherson Maynard V Olson Evan E Eichler Eric D Green Robert H Waterston Richard K Wilson

Nature 2003 Jul;424(6945):157-64

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01782DOI Listing
July 2003

Initial sequencing and comparative analysis of the mouse genome.

Authors:
Robert H Waterston Kerstin Lindblad-Toh Ewan Birney Jane Rogers Josep F Abril Pankaj Agarwal Richa Agarwala Rachel Ainscough Marina Alexandersson Peter An Stylianos E Antonarakis John Attwood Robert Baertsch Jonathon Bailey Karen Barlow Stephan Beck Eric Berry Bruce Birren Toby Bloom Peer Bork Marc Botcherby Nicolas Bray Michael R Brent Daniel G Brown Stephen D Brown Carol Bult John Burton Jonathan Butler Robert D Campbell Piero Carninci Simon Cawley Francesca Chiaromonte Asif T Chinwalla Deanna M Church Michele Clamp Christopher Clee Francis S Collins Lisa L Cook Richard R Copley Alan Coulson Olivier Couronne James Cuff Val Curwen Tim Cutts Mark Daly Robert David Joy Davies Kimberly D Delehaunty Justin Deri Emmanouil T Dermitzakis Colin Dewey Nicholas J Dickens Mark Diekhans Sheila Dodge Inna Dubchak Diane M Dunn Sean R Eddy Laura Elnitski Richard D Emes Pallavi Eswara Eduardo Eyras Adam Felsenfeld Ginger A Fewell Paul Flicek Karen Foley Wayne N Frankel Lucinda A Fulton Robert S Fulton Terrence S Furey Diane Gage Richard A Gibbs Gustavo Glusman Sante Gnerre Nick Goldman Leo Goodstadt Darren Grafham Tina A Graves Eric D Green Simon Gregory Roderic Guigó Mark Guyer Ross C Hardison David Haussler Yoshihide Hayashizaki LaDeana W Hillier Angela Hinrichs Wratko Hlavina Timothy Holzer Fan Hsu Axin Hua Tim Hubbard Adrienne Hunt Ian Jackson David B Jaffe L Steven Johnson Matthew Jones Thomas A Jones Ann Joy Michael Kamal Elinor K Karlsson Donna Karolchik Arkadiusz Kasprzyk Jun Kawai Evan Keibler Cristyn Kells W James Kent Andrew Kirby Diana L Kolbe Ian Korf Raju S Kucherlapati Edward J Kulbokas David Kulp Tom Landers J P Leger Steven Leonard Ivica Letunic Rosie Levine Jia Li Ming Li Christine Lloyd Susan Lucas Bin Ma Donna R Maglott Elaine R Mardis Lucy Matthews Evan Mauceli John H Mayer Megan McCarthy W Richard McCombie Stuart McLaren Kirsten McLay John D McPherson Jim Meldrim Beverley Meredith Jill P Mesirov Webb Miller Tracie L Miner Emmanuel Mongin Kate T Montgomery Michael Morgan Richard Mott James C Mullikin Donna M Muzny William E Nash Joanne O Nelson Michael N Nhan Robert Nicol Zemin Ning Chad Nusbaum Michael J O'Connor Yasushi Okazaki Karen Oliver Emma Overton-Larty Lior Pachter Genís Parra Kymberlie H Pepin Jane Peterson Pavel Pevzner Robert Plumb Craig S Pohl Alex Poliakov Tracy C Ponce Chris P Ponting Simon Potter Michael Quail Alexandre Reymond Bruce A Roe Krishna M Roskin Edward M Rubin Alistair G Rust Ralph Santos Victor Sapojnikov Brian Schultz Jörg Schultz Matthias S Schwartz Scott Schwartz Carol Scott Steven Seaman Steve Searle Ted Sharpe Andrew Sheridan Ratna Shownkeen Sarah Sims Jonathan B Singer Guy Slater Arian Smit Douglas R Smith Brian Spencer Arne Stabenau Nicole Stange-Thomann Charles Sugnet Mikita Suyama Glenn Tesler Johanna Thompson David Torrents Evanne Trevaskis John Tromp Catherine Ucla Abel Ureta-Vidal Jade P Vinson Andrew C Von Niederhausern Claire M Wade Melanie Wall Ryan J Weber Robert B Weiss Michael C Wendl Anthony P West Kris Wetterstrand Raymond Wheeler Simon Whelan Jamey Wierzbowski David Willey Sophie Williams Richard K Wilson Eitan Winter Kim C Worley Dudley Wyman Shan Yang Shiaw-Pyng Yang Evgeny M Zdobnov Michael C Zody Eric S Lander

Nature 2002 Dec;420(6915):520-62

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01262DOI Listing
December 2002

A physical map of the mouse genome.

Nature 2002 Aug 4;418(6899):743-50. Epub 2002 Aug 4.

The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature00957DOI Listing
August 2002