John C McEwan

John C McEwan

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John C McEwan

Publications by authors named "John C McEwan"

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Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data.

G3 (Bethesda) 2019 10 7;9(10):3239-3247. Epub 2019 Oct 7.

AgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel 9053, New Zealand.

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http://dx.doi.org/10.1534/g3.119.400501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778805PMC
October 2019

Natural variation in methane emission of sheep fed on a lucerne pellet diet is unrelated to rumen ciliate community type.

Microbiology 2016 Mar 26;162(3):459-465. Epub 2016 Jan 26.

AgResearch Ltd, Grasslands Research Centre, Palmerston, North 4442, New Zealand.

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http://dx.doi.org/10.1099/mic.0.000245DOI Listing
March 2016

Construction of relatedness matrices using genotyping-by-sequencing data.

BMC Genomics 2015 Dec 9;16:1047. Epub 2015 Dec 9.

AgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.

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http://dx.doi.org/10.1186/s12864-015-2252-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4675043PMC
December 2015

Genomic prediction and genome-wide association study for dagginess and host internal parasite resistance in New Zealand sheep.

BMC Genomics 2015 Nov 17;16:958. Epub 2015 Nov 17.

Invermay Agricultural Centre, AgResearch Limited, Puddle Alley, Private Bag 50034, Mosgiel, 9053, New Zealand.

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http://dx.doi.org/10.1186/s12864-015-2148-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4650926PMC
November 2015

Accuracy of genotype imputation in Nelore cattle.

Genet Sel Evol 2014 Oct 10;46:69. Epub 2014 Oct 10.

UNESP, Universidade Estadual Paulista, Faculdade de Ciências Agrárias e Veterinárias, Jaboticabal, São Paulo, 14884-900, Brazil.

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http://dx.doi.org/10.1186/s12711-014-0069-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4192291PMC
October 2014

Genomic breed prediction in New Zealand sheep.

BMC Genet 2014 Sep 16;15:92. Epub 2014 Sep 16.

AgResearch, Invermay Agricultural Centre, Private Bag, 50034, Mosgiel, New Zealand.

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http://dx.doi.org/10.1186/s12863-014-0092-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4353690PMC
September 2014

Signatures of selection in sheep bred for resistance or susceptibility to gastrointestinal nematodes.

BMC Genomics 2014 Jul 30;15:637. Epub 2014 Jul 30.

AgResearch, Invermay Agricultural Research Centre, Mosgiel, New Zealand.

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http://dx.doi.org/10.1186/1471-2164-15-637DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4124167PMC
July 2014

The locus for an inherited cataract in sheep maps to ovine chromosome 6.

Mol Vis 2012 31;18:1384-94. Epub 2012 May 31.

Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, New Zealand.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370893PMC
November 2012

Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition.

BMC Genet 2012 Feb 26;13:10. Epub 2012 Feb 26.

Department of Animal Science-Excellent centre for improving sheep carcass quality and quantity, University of Tehran, PO Box 3158711167-4111, Karaj, Iran.

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http://dx.doi.org/10.1186/1471-2156-13-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3351017PMC
February 2012

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

Science 2009 Apr;324(5926):528-32

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http://dx.doi.org/10.1126/science.1167936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735092PMC
April 2009

A multiway analysis for identifying high integrity bovine BACs.

BMC Genomics 2009 Jan 23;10:46. Epub 2009 Jan 23.

CSIRO Livestock Industries, 306 Carmody Road, St. Lucia, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660975PMC
January 2009

Future perspectives for the implementation of genetic markers for parasite resistance in sheep.

Trop Biomed 2008 Feb;25(1 Suppl):18-33

CSIRO Livestock Industries, Armidale NSW, Australia.

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February 2008

Transcriptional profiling of Ovis aries identifies Ovar-DQA1 allele frequency differences between nematode-resistant and susceptible selection lines.

Physiol Genomics 2007 Aug 8;30(3):253-61. Epub 2007 May 8.

AgResearch Molecular Biology Unit, Department of Biochemistry, University of Otago, Dunedin, New Zealand.

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http://dx.doi.org/10.1152/physiolgenomics.00273.2006DOI Listing
August 2007

Inference of transcriptional regulation using gene expression data from the bovine and human genomes.

BMC Genomics 2007 Aug 3;8:265. Epub 2007 Aug 3.

Biochemistry Department, University of Otago, PO Box 56, Dunedin, New Zealand.

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http://dx.doi.org/10.1186/1471-2164-8-265DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978505PMC
August 2007

Expansion of the Bactericidal/Permeability Increasing-like (BPI-like) protein locus in cattle.

BMC Genomics 2007 Mar 15;8:75. Epub 2007 Mar 15.

Dairy Science and Technology Section, AgResearch Ruakura, Private Bag 3123, Hamilton, New Zealand.

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http://dx.doi.org/10.1186/1471-2164-8-75DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839098PMC
March 2007

Fatty acid synthase effects on bovine adipose fat and milk fat.

Mamm Genome 2007 Jan 22;18(1):64-74. Epub 2007 Jan 22.

AgResearch, Ruakura Research Centre, PB 3123, Hamilton, New Zealand.

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http://dx.doi.org/10.1007/s00335-006-0102-yDOI Listing
January 2007

Microarray analysis of selection lines from outbred populations to identify genes involved with nematode parasite resistance in sheep.

Physiol Genomics 2005 Mar 28;21(1):59-69. Epub 2004 Dec 28.

AgResearch, Molecular Biology Unit, Department of Biochemistry, University of Otago, Dunedin, New Zealand.

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http://dx.doi.org/10.1152/physiolgenomics.00257.2004DOI Listing
March 2005