John A Kamm

John A Kamm

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John A Kamm

John A Kamm

Publications by authors named "John A Kamm"

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8Publications

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Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans.

Mol Ecol 2018 10 17;27(19):3873-3888. Epub 2018 Apr 17.

Department of EECS, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1111/mec.14565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6165692PMC
October 2018

Robust and scalable inference of population history from hundreds of unphased whole genomes.

Nat Genet 2017 Feb 26;49(2):303-309. Epub 2016 Dec 26.

Department of Statistics, University of California, Berkeley, Berkeley, California, USA.

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http://dx.doi.org/10.1038/ng.3748DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5470542PMC
February 2017

Efficient computation of the joint sample frequency spectra for multiple populations.

J Comput Graph Stat 2017 16;26(1):182-194. Epub 2017 Feb 16.

Departments of EECS, Statistics, and Integrative Biology, University of California, Berkeley.

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http://dx.doi.org/10.1080/10618600.2016.1159212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5319604PMC
February 2017

Two-Locus Likelihoods Under Variable Population Size and Fine-Scale Recombination Rate Estimation.

Genetics 2016 07 10;203(3):1381-99. Epub 2016 May 10.

Department of Statistics, University of California, Berkeley, California 94720 Computer Science Division, University of California, Berkeley, California 94720 Department of Integrative Biology, University of California, Berkeley, California 94720 Departments of Mathematics and Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104

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http://dx.doi.org/10.1534/genetics.115.184820DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937484PMC
July 2016

The Site Frequency Spectrum for General Coalescents.

Genetics 2016 Apr 16;202(4):1549-61. Epub 2016 Feb 16.

Department of Statistics, University of California, Berkeley, California 94720 Computer Science Division, University of California, Berkeley, California 94720 Department of Integrative Biology, University of California, Berkeley, California 94720 Department of Mathematics, University of Pennsylvania, Philadelphia, Pennsylvania 19104 Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104

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http://dx.doi.org/10.1534/genetics.115.184101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827730PMC
April 2016

Decoding coalescent hidden Markov models in linear time.

Res Comput Mol Biol 2014 ;8394:100-114

Department of Integrative Biology, University of California, Berkeley.

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http://dx.doi.org/10.1007/978-3-319-05269-4_8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4203418PMC
January 2014