Publications by authors named "Joel Armstrong"

27Publications

halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments.

Gigascience 2020 Jun;9(6)

Computer Technologies Laboratory, School of Translational Information Technologies, ITMO University, 49 Kronverkskiy Pr., St. Petersburg 197101, St. Petersburg, Russian Federation.

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http://dx.doi.org/10.1093/gigascience/giaa047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7254927PMC
June 2020

Tolerance of Honey Bees to Mite in the Absence of Deformed Wing Virus.

Viruses 2020 05 23;12(5). Epub 2020 May 23.

Research and Development Division, Abu Dhabi Agriculture & Food Safety Authority, Al Ain, UAE.

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http://dx.doi.org/10.3390/v12050575DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7290856PMC
May 2020

Predicting transfer RNA gene activity from sequence and genome context.

Genome Res 2020 01 19;30(1):85-94. Epub 2019 Dec 19.

Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1101/gr.256164.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6961574PMC
January 2020

Whole-Genome Alignment and Comparative Annotation.

Annu Rev Anim Biosci 2019 02 31;7:41-64. Epub 2018 Oct 31.

UC Santa Cruz Genomics Institute, University of California, Santa Cruz, California 95064, USA; email:

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http://dx.doi.org/10.1146/annurev-animal-020518-115005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6450745PMC
February 2019

Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.

Genome Res 2018 07 8;28(7):1029-1038. Epub 2018 Jun 8.

Genomics Institute, University of California Santa Cruz and Howard Hughes Medical Institute, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1101/gr.233460.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028123PMC
July 2018

Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells.

Genome Res 2018 06 24;28(6):780-788. Epub 2018 May 24.

San Diego Zoo Institute for Conservation Research, Escondido, California 92027, USA.

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http://dx.doi.org/10.1101/gr.227603.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991516PMC
June 2018

Effects of incidental emotions on moral dilemma judgments: An analysis using the CNI model.

Emotion 2018 Oct 1;18(7):989-1008. Epub 2018 Feb 1.

Department of Psychology, Eberhard Karls Universität Tübingen.

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http://dx.doi.org/10.1037/emo0000399DOI Listing
October 2018

Consequences, norms, and generalized inaction in moral dilemmas: The CNI model of moral decision-making.

J Pers Soc Psychol 2017 Sep;113(3):343-376

Department of Psychology, Eberhard Karls Universität Tübingen.

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http://dx.doi.org/10.1037/pspa0000086DOI Listing
September 2017

Long-read sequence assembly of the gorilla genome.

Science 2016 Apr;352(6281):aae0344

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1126/science.aae0344DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920363PMC
April 2016

Building a pan-genome reference for a population.

J Comput Biol 2015 May 7;22(5):387-401. Epub 2015 Jan 7.

1 Center for Biomolecular Science and Engineering, University of California , Santa Cruz, California.

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http://dx.doi.org/10.1089/cmb.2014.0146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424974PMC
May 2015

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Science 2014 Dec 11;346(6215):1254449. Epub 2014 Dec 11.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA. Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA. Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA.

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http://jarvislab.net/wp-content/uploads/2012/02/Green-et-al-
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http://www.sciencemag.org/cgi/doi/10.1126/science.1254449
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http://dx.doi.org/10.1126/science.1254449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4386873PMC
December 2014

Comparative assembly hubs: web-accessible browsers for comparative genomics.

Bioinformatics 2014 Dec 18;30(23):3293-301. Epub 2014 Aug 18.

Center for Biomolecular Sciences and Engineering, CBSE/ITI, UC Santa Cruz, 1156 High St, Santa Cruz, CA 95064, USA and Howard Hughes Medical Institute, Center for Biomolecular Science and Engineering, UCSC, 1156 High Street, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296145PMC
December 2014