Joe Gray

Joe Gray

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Joe Gray

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Cyclic Multiplexed-Immunofluorescence (cmIF), a Highly Multiplexed Method for Single-Cell Analysis.

Methods Mol Biol 2020 ;2055:521-562

Department of Biomedical Engineering and OHSU Center for Spatial Systems Biomedicine, Oregon Health and Science University, Portland, OR, USA.

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http://dx.doi.org/10.1007/978-1-4939-9773-2_24DOI Listing
January 2020

PLK1 and EGFR targeted nanoparticle as a radiation sensitizer for non-small cell lung cancer.

Cancer Lett 2019 Dec 26;467:9-18. Epub 2019 Sep 26.

Department of Biomedical Engineering, Oregon Health & Science University, Portland, OR, 97239, USA; PDX Pharmaceuticals, LLC, Portland, OR, 97239, USA. Electronic address:

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http://dx.doi.org/10.1016/j.canlet.2019.09.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6927399PMC
December 2019

DIRAS3 (ARHI) Blocks RAS/MAPK Signaling by Binding Directly to RAS and Disrupting RAS Clusters.

Cell Rep 2019 Dec;29(11):3448-3459.e6

Department of Experimental Therapeutics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.11.045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6948147PMC
December 2019

Targeting mitochondria in cancer therapy could provide a basis for the selective anti-cancer activity.

PLoS One 2019 25;14(3):e0205623. Epub 2019 Mar 25.

Department of Molecular and Medical Genetics, Knight Cancer Institute, Oregon Health and Science University, Portland, Oregon, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205623PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6433232PMC
November 2019

High-throughput single-particle tracking reveals nested membrane domains that dictate KRas diffusion and trafficking.

Elife 2019 Nov 1;8. Epub 2019 Nov 1.

Department of Biomedical Engineering, Oregon Health and Science University, Portland, United States.

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http://dx.doi.org/10.7554/eLife.46393DOI Listing
November 2019

Using Microarrays to Interrogate Microenvironmental Impact on Cellular Phenotypes in Cancer.

J Vis Exp 2019 05 21(147). Epub 2019 May 21.

Department of Biomedical Engineering, Knight Cancer Institute, Oregon Health and Science University;

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http://dx.doi.org/10.3791/58957DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736605PMC
May 2019

Circulating tumor DNA dynamics using patient-customized assays are associated with outcome in neoadjuvantly treated breast cancer.

Cold Spring Harb Mol Case Stud 2019 04 1;5(2). Epub 2019 Apr 1.

Department of Molecular and Medical Genetics, Oregon Health and Science University (OHSU) Portland, Oregon 97201, USA.

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http://dx.doi.org/10.1101/mcs.a003772DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6549569PMC
April 2019

Therapeutic Clues from an Integrated Omic Assessment of East Asian Triple Negative Breast Cancers.

Cancer Cell 2019 03;35(3):341-343

Center for Spatial Systems Biomedicine, Department of Biomedical Engineering, Oregon Health & Science University, Portland, OR 97201, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2019.02.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6499473PMC
March 2019

Variational Autoencoding Tissue Response to Microenvironment Perturbation.

Proc SPIE Int Soc Opt Eng 2019 Feb 15;10949. Epub 2019 Mar 15.

Dept. of Biomedical Engineering, Center for Spatial Systems Biomedicine, Oregon Health & Science University, Portland, OR, USA.

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http://dx.doi.org/10.1117/12.2512660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6677277PMC
February 2019

Lack of acquired resistance in HER2-positive breast cancer cells after long-term HER2 siRNA nanoparticle treatment.

PLoS One 2018 7;13(6):e0198141. Epub 2018 Jun 7.

Department of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0198141PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991725PMC
January 2019

Peptidoglycan degradation machinery in Clostridium difficile forespore engulfment.

Mol Microbiol 2018 11;110(3):390-410

Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, UK.

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http://dx.doi.org/10.1111/mmi.14091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6221140PMC
November 2018

Microenvironment-Mediated Mechanisms of Resistance to HER2 Inhibitors Differ between HER2+ Breast Cancer Subtypes.

Cell Syst 2018 Mar 14;6(3):329-342.e6. Epub 2018 Mar 14.

Department of Biomedical Engineering, Knight Cancer Institute, OHSU Center for Spatial Systems Biomedicine, Oregon Health and Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S24054712183005
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http://dx.doi.org/10.1016/j.cels.2018.02.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5927625PMC
March 2018

A fully integrated, three-dimensional fluorescence to electron microscopy correlative workflow.

Methods Cell Biol 2017 19;140:149-164. Epub 2017 Apr 19.

Oregon Health and Sciences University, Portland, OR, United States.

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http://dx.doi.org/10.1016/bs.mcb.2017.03.008DOI Listing
February 2018

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Authors:
Alexandra B Keenan Sherry L Jenkins Kathleen M Jagodnik Simon Koplev Edward He Denis Torre Zichen Wang Anders B Dohlman Moshe C Silverstein Alexander Lachmann Maxim V Kuleshov Avi Ma'ayan Vasileios Stathias Raymond Terryn Daniel Cooper Michele Forlin Amar Koleti Dusica Vidovic Caty Chung Stephan C Schürer Jouzas Vasiliauskas Marcin Pilarczyk Behrouz Shamsaei Mehdi Fazel Yan Ren Wen Niu Nicholas A Clark Shana White Naim Mahi Lixia Zhang Michal Kouril John F Reichard Siva Sivaganesan Mario Medvedovic Jaroslaw Meller Rick J Koch Marc R Birtwistle Ravi Iyengar Eric A Sobie Evren U Azeloglu Julia Kaye Jeannette Osterloh Kelly Haston Jaslin Kalra Steve Finkbiener Jonathan Li Pamela Milani Miriam Adam Renan Escalante-Chong Karen Sachs Alex Lenail Divya Ramamoorthy Ernest Fraenkel Gavin Daigle Uzma Hussain Alyssa Coye Jeffrey Rothstein Dhruv Sareen Loren Ornelas Maria Banuelos Berhan Mandefro Ritchie Ho Clive N Svendsen Ryan G Lim Jennifer Stocksdale Malcolm S Casale Terri G Thompson Jie Wu Leslie M Thompson Victoria Dardov Vidya Venkatraman Andrea Matlock Jennifer E Van Eyk Jacob D Jaffe Malvina Papanastasiou Aravind Subramanian Todd R Golub Sean D Erickson Mohammad Fallahi-Sichani Marc Hafner Nathanael S Gray Jia-Ren Lin Caitlin E Mills Jeremy L Muhlich Mario Niepel Caroline E Shamu Elizabeth H Williams David Wrobel Peter K Sorger Laura M Heiser Joe W Gray James E Korkola Gordon B Mills Mark LaBarge Heidi S Feiler Mark A Dane Elmar Bucher Michel Nederlof Damir Sudar Sean Gross David F Kilburn Rebecca Smith Kaylyn Devlin Ron Margolis Leslie Derr Albert Lee Ajay Pillai

Cell Syst 2018 01 29;6(1):13-24. Epub 2017 Nov 29.

NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.cels.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799026PMC
January 2018

Simultaneous Multicolor Single-Molecule Tracking with Single-Laser Excitation via Spectral Imaging.

Biophys J 2018 01;114(2):301-310

Department of Biomedical Engineering, OHSU Center for Spatial Systems Biomedicine, and Knight Cancer Institute, Oregon Health and Science University, Portland, Oregon. Electronic address:

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http://dx.doi.org/10.1016/j.bpj.2017.11.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984991PMC
January 2018

Pathway-Enriched Gene Signature Associated with 53BP1 Response to PARP Inhibition in Triple-Negative Breast Cancer.

Mol Cancer Ther 2017 Dec 27;16(12):2892-2901. Epub 2017 Sep 27.

Department of Biomedical Engineering, OHSU Center for Spatial Systems Biomedicine, Oregon Health and Science University, Portland, Oregon.

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http://mct.aacrjournals.org/lookup/doi/10.1158/1535-7163.MCT
Publisher Site
http://dx.doi.org/10.1158/1535-7163.MCT-17-0170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5765867PMC
December 2017

Quantification of sensitivity and resistance of breast cancer cell lines to anti-cancer drugs using GR metrics.

Sci Data 2017 11 7;4:170166. Epub 2017 Nov 7.

HMS LINCS Center, Laboratory of Systems Pharmacology, Department of Systems Biology, Harvard Medical School, Boston, MA 02115 USA.

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http://dx.doi.org/10.1038/sdata.2017.166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5674849PMC
November 2017

Quantitative, in situ analysis of mRNAs and proteins with subcellular resolution.

Sci Rep 2017 11 28;7(1):16459. Epub 2017 Nov 28.

Department of Biomedical Engineering, OHSU Center for Spatial Systems Biomedicine, Oregon Health & Science University, 2730 SW Moody Ave, Portland, OR, 97201, USA.

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http://dx.doi.org/10.1038/s41598-017-16492-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705767PMC
November 2017

Combinatorial Microenvironments Impose a Continuum of Cellular Responses to a Single Pathway-Targeted Anti-cancer Compound.

Cell Rep 2017 Oct;21(2):533-545

Department of Population Sciences, City of Hope, Duarte, CA 91010, USA; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Center for Cancer Biomarkers, University of Bergen, Bergen 5009, Norway. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.09.058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648071PMC
October 2017

Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices.

IEEE/ACM Trans Comput Biol Bioinform 2016 Jul-Aug;13(4):767-777. Epub 2015 Aug 7.

Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, CA 94720 USA; Faculty Scientist, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA.

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http://dx.doi.org/10.1109/TCBB.2015.2465952DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154690PMC
September 2017

Quantitating morphological changes in biological samples during scanning electron microscopy sample preparation with correlative super-resolution microscopy.

PLoS One 2017 31;12(5):e0176839. Epub 2017 May 31.

Department of Biomedical Engineering, Knight Cancer Institute, and OHSU Center for Spatial Systems Biomedicine (OCSSB), Oregon Health and Science University, Portland, Oregon, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0176839PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5451012PMC
September 2017

Traceless Cleavage of Protein-Biotin Conjugates under Biologically Compatible Conditions.

Chembiochem 2017 09 19;18(17):1688-1691. Epub 2017 Jul 19.

Institute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.

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http://dx.doi.org/10.1002/cbic.201700214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5708275PMC
September 2017

Bayesian Network Inference Modeling Identifies TRIB1 as a Novel Regulator of Cell-Cycle Progression and Survival in Cancer Cells.

Cancer Res 2017 04 13;77(7):1575-1585. Epub 2017 Jan 13.

Divisions of Gastroenterology and Hematology/Oncology, Department of Medicine, University of California, San Francisco, California.

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http://dx.doi.org/10.1158/0008-5472.CAN-16-0512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5410377PMC
April 2017

Targeted Treatment of Metastatic Breast Cancer by PLK1 siRNA Delivered by an Antioxidant Nanoparticle Platform.

Mol Cancer Ther 2017 04 30;16(4):763-772. Epub 2017 Jan 30.

Department of Biomedical Engineering, Oregon Health and Science University, Portland, Oregon.

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http://dx.doi.org/10.1158/1535-7163.MCT-16-0644DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5445934PMC
April 2017

Circulating-tumor DNA as an early detection and diagnostic tool.

Curr Opin Genet Dev 2017 Feb 23;42:14-21. Epub 2017 Jan 23.

Oregon Health and Science University Department of Biomedical Engineering, Mail Code CL3G, 2730 SW Moody Ave., Portland, OR 97201-5042, United States; Oregon Health and Science University Knight Cancer Institute, Mail Code CR145, 3181 SW Sam Jackson Park Road, Portland, OR 97239-3098, United States; Oregon Health and Science University Center for Spatial System Biomedicine, Collaborative Life Sciences Building, 2730 SW Moody Ave, Mail Code CL3G, Portland, OR 97201-5042, United States. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2016.12.003DOI Listing
February 2017

Integrative Analysis on Histopathological Image for Identifying Cellular Heterogeneity.

Proc SPIE Int Soc Opt Eng 2017 Feb 1;10140. Epub 2017 Mar 1.

Biomedical Engineering, Oregon Health and Science University, Portland, OR, USA.

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http://dx.doi.org/10.1117/12.2250428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6198666PMC
February 2017

Epigenomic Inactivation of RasGAPs Activates RAS Signaling in a Subset of Luminal B Breast Cancers.

Cancer Discov 2017 02;7(2):131-133

Department of Biomedical Engineering, Knight Cancer Institute, Oregon Health and Science University, Portland, Oregon.

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http://dx.doi.org/10.1158/2159-8290.CD-16-1423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312830PMC
February 2017

Characterizing the immune microenvironment in high-risk ductal carcinoma in situ of the breast.

Breast Cancer Res Treat 2017 01 26;161(1):17-28. Epub 2016 Oct 26.

Department of Surgery, University of California, 2340 Sutter St, N321, San Francisco, CA, 94115, USA.

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http://dx.doi.org/10.1007/s10549-016-4036-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5225037PMC
January 2017

PI3 Kinase Pathway Mutations in Human Cancers.

Authors:
Joe W Gray

JAMA Oncol 2016 Dec;2(12):1543-1544

Department of Biomedical Engineering, Center for Spatial Systems Biomedicine, Knight Cancer Institute, Oregon Health and Science University, Portland.

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http://dx.doi.org/10.1001/jamaoncol.2016.0875DOI Listing
December 2016

Multiplexed imaging reveals heterogeneity of PI3K/MAPK network signaling in breast lesions of known PIK3CA genotype.

Breast Cancer Res Treat 2016 Oct 31;159(3):575-83. Epub 2016 Aug 31.

Department of Biomedical Engineering, Oregon Health & Science University, Portland, OR, 97201, USA.

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http://dx.doi.org/10.1007/s10549-016-3962-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5762199PMC
October 2016

FOXA1 overexpression mediates endocrine resistance by altering the ER transcriptome and IL-8 expression in ER-positive breast cancer.

Proc Natl Acad Sci U S A 2016 10 6;113(43):E6600-E6609. Epub 2016 Oct 6.

Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030; Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX 77030; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030; Department of Medicine, Baylor College of Medicine, Houston, TX 77030;

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http://dx.doi.org/10.1073/pnas.1612835113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5087040PMC
October 2016

A Biobank of Breast Cancer Explants with Preserved Intra-tumor Heterogeneity to Screen Anticancer Compounds.

Cell 2016 09 15;167(1):260-274.e22. Epub 2016 Sep 15.

Department of Oncology and Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Cambridge CB2 0RE, UK; Cambridge Breast Unit, NIHR Cambridge Biomedical Research Centre and Cambridge Experimental Cancer Medicine Centre at Cambridge University Hospitals NHS Foundation Trust, Cambridge CB2 2QQ, UK. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5037319PMC
http://dx.doi.org/10.1016/j.cell.2016.08.041DOI Listing
September 2016

Lyme disease and relapsing fever Borrelia elongate through zones of peptidoglycan synthesis that mark division sites of daughter cells.

Proc Natl Acad Sci U S A 2016 08 9;113(33):9162-70. Epub 2016 Aug 9.

Microbial Sciences Institute, Yale University, West Haven, CT 06517; Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06516; Howard Hughes Medical Institute, Yale University, New Haven, CT 06516; Department of Microbial Pathogenesis, Yale Medical School, New Haven, CT 06516

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http://dx.doi.org/10.1073/pnas.1610805113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995948PMC
August 2016

Functional oncogene signatures guide rationally designed combination therapies to synergistically induce breast cancer cell death.

Oncotarget 2016 Jun;7(24):36138-36153

Department of Pathology and Laboratory Medicine, Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina, USA.

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http://dx.doi.org/10.18632/oncotarget.9147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094989PMC
June 2016

Disentangling multidimensional spatio-temporal data into their common and aberrant responses.

PLoS One 2015 22;10(4):e0121607. Epub 2015 Apr 22.

Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA; Faculty Scientist, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0121607PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4406848PMC
April 2016

Current development of targeted oligonucleotide-based cancer therapies: Perspective on HER2-positive breast cancer treatment.

Cancer Treat Rev 2016 Apr 22;45:19-29. Epub 2016 Feb 22.

Department of Biomedical Engineering, Oregon Health and Science University, 3303 SW Bond Ave, Portland, OR 97239, USA; PDX Pharmaceuticals, LLC, 3303 SW Bond Ave, Portland, OR 97239, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ctrv.2016.02.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826844PMC
April 2016

Therapeutic siRNA for drug-resistant HER2-positive breast cancer.

Oncotarget 2016 Mar;7(12):14727-41

Department of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, 97239, USA.

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http://dx.doi.org/10.18632/oncotarget.7409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4924747PMC
March 2016

Tumor-Derived Cell Lines as Molecular Models of Cancer Pharmacogenomics.

Mol Cancer Res 2016 Jan 6;14(1):3-13. Epub 2015 Aug 6.

Department of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, Colorado. University of Colorado Comprehensive Cancer Center, University of Colorado Anschutz Medical Campus, Aurora, Colorado.

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http://dx.doi.org/10.1158/1541-7786.MCR-15-0189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4828339PMC
January 2016

IL-10 and integrin signaling pathways are associated with head and neck cancer progression.

BMC Genomics 2016 Jan 8;17:38. Epub 2016 Jan 8.

OHSU Knight Cancer Institute, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, OR, 97239, USA.

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http://dx.doi.org/10.1186/s12864-015-2359-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4706689PMC
January 2016

Large-Scale Drug Screens Support Precision Medicine.

Cancer Discov 2015 Nov;5(11):1130-2

The University of Texas MD Anderson Cancer Center, Houston, Texas.

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http://dx.doi.org/10.1158/2159-8290.CD-15-0945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4633700PMC
November 2015

Transfer of penicillin resistance from Streptococcus oralis to Streptococcus pneumoniae identifies murE as resistance determinant.

Mol Microbiol 2015 Sep 19;97(5):866-80. Epub 2015 Jun 19.

Department of Microbiology, University of Kaiserslautern, Kaiserslautern, Germany.

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http://dx.doi.org/10.1111/mmi.13070DOI Listing
September 2015

Ras-GTP dimers activate the Mitogen-Activated Protein Kinase (MAPK) pathway.

Proc Natl Acad Sci U S A 2015 Jun 16;112(26):7996-8001. Epub 2015 Jun 16.

Departments of Physics and Molecular and Cellular Physiology, Stanford University, Stanford, CA 94305

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http://dx.doi.org/10.1073/pnas.1509123112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4491781PMC
June 2015

Do breast cancer cell lines provide a relevant model of the patient tumor methylome?

PLoS One 2014 26;9(8):e105545. Epub 2014 Aug 26.

Department of Oncology, The Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America; Department of Surgery, The Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America; Department of Pathology, The Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105545PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4144876PMC
May 2015

Nanoparticle-mediated systemic delivery of siRNA for treatment of cancers and viral infections.

Theranostics 2014 11;4(9):872-92. Epub 2014 Jun 11.

1. Zhejiang-California International Nanosystems Institute, Zhejiang University, Hangzhou, Zhejiang 310029, China ; 3. Life Sciences College, Fudan University, Shanghai 200433, China ; 4. Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94127, USA.

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http://dx.doi.org/10.7150/thno.9404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107289PMC
April 2015

Discrete and overlapping functions of peptidoglycan synthases in growth, cell division and virulence of Listeria monocytogenes.

Mol Microbiol 2015 Jan 19;95(2):332-51. Epub 2014 Dec 19.

FG11 Division of Enteropathogenic Bacteria and Legionella, Robert Koch Institute, Burgstrasse 37, 38855, Wernigerode, Germany.

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http://dx.doi.org/10.1111/mmi.12873DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4320753PMC
January 2015

Exact reconstruction of gene regulatory networks using compressive sensing.

BMC Bioinformatics 2014 Dec 14;15:400. Epub 2014 Dec 14.

Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, 94720, CA, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/s12859-014-0400-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308013PMC
December 2014

Identification of gene regulation patterns underlying both oestrogen- and tamoxifen-stimulated cell growth through global gene expression profiling in breast cancer cells.

Eur J Cancer 2014 Nov 15;50(16):2877-86. Epub 2014 Sep 15.

Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University, Washington DC 20057, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2014.08.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4210771PMC
November 2014

Endocytic trafficking of laminin is controlled by dystroglycan and is disrupted in cancers.

J Cell Sci 2014 Nov 12;127(Pt 22):4894-903. Epub 2014 Sep 12.

California Pacific Medical Center Research Institute, 475 Brannan St., Suite 220, San Francisco, CA 94107, USA Biomedical Engineering Department, Oregon Health and Sciences University, 3181 SW Sam Jackson Park Road, Portland, OR 97239, USA

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http://dx.doi.org/10.1242/jcs.152728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231305PMC
November 2014

Reply to Colorectal cancer classification based on gene expression is not associated with FOLFIRI response.

Nat Med 2014 Nov;20(11):1231-2

cole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1038/nm.3742DOI Listing
November 2014

Causal network inference using biochemical kinetics.

Bioinformatics 2014 Sep;30(17):i468-74

Department of Statistics, University of Warwick, Coventry, CV4 7AL, MRC Biostatistics Unit, Cambridge, CB2 0SR, UK, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94710, Department of Biomedical Engineering, Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97239-3098, USA and School of Clinical Medicine, University of Cambridge, Cambridge, CB2 0SP, UK Department of Statistics, University of Warwick, Coventry, CV4 7AL, MRC Biostatistics Unit, Cambridge, CB2 0SR, UK, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94710, Department of Biomedical Engineering, Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97239-3098, USA and School of Clinical Medicine, University of Cambridge, Cambridge, CB2 0SP, UK.

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http://dx.doi.org/10.1093/bioinformatics/btu452DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147905PMC
September 2014