Jochen Supper

Jochen Supper

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Jochen Supper

Jochen Supper

Publications by authors named "Jochen Supper"

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An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:
Catherine A Brownstein Alan H Beggs Nils Homer Barry Merriman Timothy W Yu Katherine C Flannery Elizabeth T DeChene Meghan C Towne Sarah K Savage Emily N Price Ingrid A Holm Lovelace J Luquette Elaine Lyon Joseph Majzoub Peter Neupert David McCallie Peter Szolovits Huntington F Willard Nancy J Mendelsohn Renee Temme Richard S Finkel Sabrina W Yum Livija Medne Shamil R Sunyaev Ivan Adzhubey Christopher A Cassa Paul I W de Bakker Hatice Duzkale Piotr Dworzyński William Fairbrother Laurent Francioli Birgit H Funke Monica A Giovanni Robert E Handsaker Kasper Lage Matthew S Lebo Monkol Lek Ignaty Leshchiner Daniel G MacArthur Heather M McLaughlin Michael F Murray Tune H Pers Paz P Polak Soumya Raychaudhuri Heidi L Rehm Rachel Soemedi Nathan O Stitziel Sara Vestecka Jochen Supper Claudia Gugenmus Bernward Klocke Alexander Hahn Max Schubach Mortiz Menzel Saskia Biskup Peter Freisinger Mario Deng Martin Braun Sven Perner Richard J H Smith Janeen L Andorf Jian Huang Kelli Ryckman Val C Sheffield Edwin M Stone Thomas Bair E Ann Black-Ziegelbein Terry A Braun Benjamin Darbro Adam P DeLuca Diana L Kolbe Todd E Scheetz Aiden E Shearer Rama Sompallae Kai Wang Alexander G Bassuk Erik Edens Katherine Mathews Steven A Moore Oleg A Shchelochkov Pamela Trapane Aaron Bossler Colleen A Campbell Jonathan W Heusel Anne Kwitek Tara Maga Karin Panzer Thomas Wassink Douglas Van Daele Hela Azaiez Kevin Booth Nic Meyer Michael M Segal Marc S Williams Gerard Tromp Peter White Donald Corsmeier Sara Fitzgerald-Butt Gail Herman Devon Lamb-Thrush Kim L McBride David Newsom Christopher R Pierson Alexander T Rakowsky Aleš Maver Luca Lovrečić Anja Palandačić Borut Peterlin Ali Torkamani Anna Wedell Mikael Huss Andrey Alexeyenko Jessica M Lindvall Måns Magnusson Daniel Nilsson Henrik Stranneheim Fulya Taylan Christian Gilissen Alexander Hoischen Bregje van Bon Helger Yntema Marcel Nelen Weidong Zhang Jason Sager Lu Zhang Kathryn Blair Deniz Kural Michael Cariaso Greg G Lennon Asif Javed Saloni Agrawal Pauline C Ng Komal S Sandhu Shuba Krishna Vamsi Veeramachaneni Ofer Isakov Eran Halperin Eitan Friedman Noam Shomron Gustavo Glusman Jared C Roach Juan Caballero Hannah C Cox Denise Mauldin Seth A Ament Lee Rowen Daniel R Richards F Anthony San Lucas Manuel L Gonzalez-Garay C Thomas Caskey Yu Bai Ying Huang Fang Fang Yan Zhang Zhengyuan Wang Jorge Barrera Juan M Garcia-Lobo Domingo González-Lamuño Javier Llorca Maria C Rodriguez Ignacio Varela Martin G Reese Francisco M De La Vega Edward Kiruluta Michele Cargill Reece K Hart Jon M Sorenson Gholson J Lyon David A Stevenson Bruce E Bray Barry M Moore Karen Eilbeck Mark Yandell Hongyu Zhao Lin Hou Xiaowei Chen Xiting Yan Mengjie Chen Cong Li Can Yang Murat Gunel Peining Li Yong Kong Austin C Alexander Zayed I Albertyn Kym M Boycott Dennis E Bulman Paul M K Gordon A Micheil Innes Bartha M Knoppers Jacek Majewski Christian R Marshall Jillian S Parboosingh Sarah L Sawyer Mark E Samuels Jeremy Schwartzentruber Isaac S Kohane David M Margulies

Genome Biol 2014 Mar 25;15(3):R53. Epub 2014 Mar 25.

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http://dx.doi.org/10.1186/gb-2014-15-3-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073084PMC
March 2014

Detecting and visualizing gene fusions.

Methods 2013 Jan 2;59(1):S24-8. Epub 2012 Oct 2.

Genomatix Software GmbH, Bayerstr. 85a, 80335 München, Germany.

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http://dx.doi.org/10.1016/j.ymeth.2012.09.013DOI Listing
January 2013

TDP-43 regulates global translational yield by splicing of exon junction complex component SKAR.

Nucleic Acids Res 2012 Mar 25;40(6):2668-82. Epub 2011 Nov 25.

Laboratory of Functional Neurogenetics, Department of Neurodegeneration, Hertie Institute for Clinical Brain Research and German Center for Neurodegenerative Diseases, University of Tübingen, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1093/nar/gkr1082DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315294PMC
March 2012

Predicting DNA-binding specificities of eukaryotic transcription factors.

PLoS One 2010 Nov 30;5(11):e13876. Epub 2010 Nov 30.

Center for Bioinformatics Tübingen (ZBIT), University of Tübingen, Tübingen, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0013876PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2994704PMC
November 2010

Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry.

Algorithms Mol Biol 2010 Jun 25;5:28. Epub 2010 Jun 25.

University of Tübingen, Center for Bioinformatics, Sand 1, D-72076 Tübingen, Germany.

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http://dx.doi.org/10.1186/1748-7188-5-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2911453PMC
June 2010

BowTieBuilder: modeling signal transduction pathways.

BMC Syst Biol 2009 Jun 30;3:67. Epub 2009 Jun 30.

Center for Bioinformatics Tübingen (ZBIT), University of Tübingen, Sand 1, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1186/1752-0509-3-67DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712453PMC
June 2009

SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks.

BMC Syst Biol 2008 Apr 30;2:39. Epub 2008 Apr 30.

Center for Bioinformatics Tübingen (ZBIT), University of Tübingen, Sand 1, 72076 Tübingen, Germany.

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http://dx.doi.org/10.1186/1752-0509-2-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2412839PMC
April 2008

EDISA: extracting biclusters from multiple time-series of gene expression profiles.

BMC Bioinformatics 2007 Sep 12;8:334. Epub 2007 Sep 12.

Center for Bioinformatics Tübingen (ZBIT), University of Tübingen, Sand 1, 72076 Tübingen, Germany.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-8-334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2063505PMC
September 2007