Joaquin Tarraga

Joaquin Tarraga

UNVERIFIED PROFILE

Are you Joaquin Tarraga?   Register this Author

Register author
Joaquin Tarraga

Joaquin Tarraga

Publications by authors named "Joaquin Tarraga"

Are you Joaquin Tarraga?   Register this Author

23Publications

454Reads

31Profile Views

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.

BMC Bioinformatics 2017 Sep 20;18(1):421. Epub 2017 Sep 20.

Clinical Bioinformatics Research Area, Fundación Progreso y Salud, Hospital Virgen del Rocío, 41013, Sevilla, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-017-1837-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5607581PMC
September 2017

A new parallel pipeline for DNA methylation analysis of long reads datasets.

BMC Bioinformatics 2017 Mar 9;18(1):161. Epub 2017 Mar 9.

Department of Computational Genomics, Centro de Investigación Príncipe Felipe, Eduardo Primo Yúfera, s/n, Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-017-1574-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5343294PMC
March 2017

HPG pore: an efficient and scalable framework for nanopore sequencing data.

BMC Bioinformatics 2016 Feb 27;17:107. Epub 2016 Feb 27.

Computational Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia, 46012, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-016-0966-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4769497PMC
February 2016

A parallel and sensitive software tool for methylation analysis on multicore platforms.

Bioinformatics 2015 Oct 10;31(19):3130-8. Epub 2015 Jun 10.

Department of Computational Genomics, Centro de Investigación Príncipe Felipe.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btv357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679392PMC
October 2015

Babelomics 5.0: functional interpretation for new generations of genomic data.

Nucleic Acids Res 2015 Jul 20;43(W1):W117-21. Epub 2015 Apr 20.

Computational Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia, 46012, Spain Computational Genomics Chair, Bull-CIPF, Valencia, 46012, Spain Bioinformatics of Rare Diseases (BIER), CIBER de Enfermedades Raras (CIBERER), Valencia, 46012, Spain Functional Genomics Node, (INB) at CIPF, Valencia, 46012, Spain

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489263PMC
July 2015

Fast inexact mapping using advanced tree exploration on backward search methods.

BMC Bioinformatics 2015 Jan 28;16:18. Epub 2015 Jan 28.

GRyCAP department of I3M, Universitat Politècnica de València, Building 8B, Camino de vera s/n, Valencia, 46022, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-014-0438-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4384339PMC
January 2015

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

Bioinformatics 2014 Dec 20;30(23):3396-8. Epub 2014 Aug 20.

Department of Computational Genomics, Centro de Investigación Príncipe Felipe (CIPF), Functional Genomics Node, (INB) at CIPF 46012, Departamento de Informática, Universidad de Valencia, 46100 Valencia, Departamento de Ingeniería y Ciencia de Computadores, Universitat Jaume I, 12071 Castellón de la Plana, Instituto de Investigación en Informática de Albacete, Universidad de Castilla-La Mancha, Campus Universitario, 02071 Albacete, Universitat Politècnica de València, Instituto de Instrumentación para Imagen Molecular, 46022 Valencia, Grupo de Investigación Biomédica de Imagen (GIBI 2^30), La Fe Polytechnic University Hospital, 46022 Valencia and Bioinformatics of Rare Diseases (BIER), CIBER de Enfermedades Raras (CIBERER), Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu553DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816028PMC
December 2014

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.

Nucleic Acids Res 2012 Jul 12;40(Web Server issue):W609-14. Epub 2012 Jun 12.

Department of Bioinformatics and Genomics, Centro de Investigación Príncipe Felipe (CIPF), 46012 Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gks575DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394301PMC
July 2012

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.

Nucleic Acids Res 2011 Jul 6;39(Web Server issue):W470-4. Epub 2011 Jun 6.

Evolutionary Genomics Lab, Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler, 16-3, 46013 Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkr408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125789PMC
July 2011

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Nucleic Acids Res 2008 Jul 31;36(Web Server issue):W341-6. Epub 2008 May 31.

Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Autopista del Saler 16, E46013 Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkn318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447758PMC
July 2008

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.

Nucleic Acids Res 2007 Jul 22;35(Web Server issue):W38-42. Epub 2007 Apr 22.

Bioinformatics Department, Centro de Investigación Príncipe Felipe, INB, CIPF, Valencia 46013, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933211PMC
July 2007

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Nucleic Acids Res 2007 Jul 27;35(Web Server issue):W81-5. Epub 2007 Apr 27.

Bioinformatics Department, Centro de Investigación Príncipe Felipe, INB, CIPF, Valencia 46013, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1933149PMC
July 2007

Functional profiling and gene expression analysis of chromosomal copy number alterations.

Bioinformation 2007 Apr 10;1(10):432-5. Epub 2007 Apr 10.

Department of Bioinformatics, Centro de Investigación Príncipe Felipe (CIPF), Valencia, E-46013, Spain.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1896059PMC
http://dx.doi.org/10.6026/97320630001432DOI Listing
April 2007

Prophet, a web-based tool for class prediction using microarray data.

Bioinformatics 2007 Feb 30;23(3):390-1. Epub 2006 Nov 30.

Department of Bioinformatics, Centro de Investigación Príncipe Felipe, Valencia, E46013, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl602DOI Listing
February 2007

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W472-6

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler 16, E-46013, Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkl172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538844PMC
July 2006

Next station in microarray data analysis: GEPAS.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W486-91

Bioinformatics Department, Centro de Investigación Príncipe Felipe, Autopista del Saler 16, E46013, Valencia, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkl197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538867PMC
July 2006