Joanne B Emerson

Joanne B Emerson

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Joanne B Emerson

Joanne B Emerson

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Soil Viruses: A New Hope.

Authors:
Joanne B Emerson

mSystems 2019 May 28;4(3). Epub 2019 May 28.

Department of Plant Pathology, University of California, Davis, Davis, California, USA

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http://msystems.asm.org/lookup/doi/10.1128/mSystems.00120-19
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http://dx.doi.org/10.1128/mSystems.00120-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6584876PMC
May 2019

Benchmarking viromics: an evaluation of metagenome-enabled estimates of viral community composition and diversity.

PeerJ 2017 21;5:e3817. Epub 2017 Sep 21.

Department of Microbiology, Ohio State University, Columbus, OH, United States of America.

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http://dx.doi.org/10.7717/peerj.3817DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5610896PMC
September 2017

Putative archaeal viruses from the mesopelagic ocean.

PeerJ 2017 15;5:e3428. Epub 2017 Jun 15.

Department of Microbiology, Ohio State University, Columbus, OH, United States of America.

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http://dx.doi.org/10.7717/peerj.3428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5474096PMC
June 2017

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO concentrations.

Environ Microbiol 2017 02 7;19(2):459-474. Epub 2016 Jul 7.

Department of Earth and Planetary Sciences, University of California, Berkeley, 307 McCone Hall, CA, 94720, USA.

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http://dx.doi.org/10.1111/1462-2920.13362DOI Listing
February 2017

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla.

Environ Microbiol 2016 06 8;18(6):1686-703. Epub 2015 Apr 8.

Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA, 94720-4767, USA.

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http://doi.wiley.com/10.1111/1462-2920.12817
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http://dx.doi.org/10.1111/1462-2920.12817DOI Listing
June 2016

De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.

Archaea 2015 1;2015:875784. Epub 2015 Feb 1.

Department of Biological Sciences, Dornsife College of Letters, Arts and Sciences, University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA 90089, USA.

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http://dx.doi.org/10.1155/2015/875784DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4330952PMC
November 2015

Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere.

Environ Sci Technol 2013 22;47(21):12097-106. Epub 2013 Oct 22.

Department of Ecology and Evolutionary Biology, University of Colorado , UCB 334, Boulder, Colorado 80309, United States.

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http://www.colorado.edu/eeb/EEBprojects/FiererLab/Bowers_eta
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http://pubs.acs.org/doi/abs/10.1021/es402970s
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http://dx.doi.org/10.1021/es402970sDOI Listing
June 2015

Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood.

Environ Sci Technol 2015 Mar 13;49(5):2675-84. Epub 2015 Feb 13.

Cooperative Institute for Research in Environmental Sciences, University of Colorado at Boulder , 216 UCB, Boulder, Colorado 80309-0216, United States.

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http://dx.doi.org/10.1021/es503845jDOI Listing
March 2015

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface.

Nat Commun 2014 Nov 26;5:5497. Epub 2014 Nov 26.

1] University of Regensburg, Department for Microbiology and Archaea Center, Universitaetsstrasse 31, 93053 Regensburg, Germany [2] Medical University Graz, Department of Internal Medicine, Auenbruggerplatz 15, 8036 Graz, Austria [3] BioTechMed Graz, Krenngasse 37, 8010 Graz, Austria.

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http://dx.doi.org/10.1038/ncomms6497DOI Listing
November 2014

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

ISME J 2014 May 12;8(5):979-90. Epub 2013 Dec 12.

1] Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA [2] Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1038/ismej.2013.221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3996697PMC
May 2014

Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia.

Archaea 2013 18;2013:370871. Epub 2013 Jun 18.

Department of Earth and Planetary Science, University of California, Berkeley, 307 McCone Hall, Berkeley, CA 94720-4767, USA.

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http://dx.doi.org/10.1155/2013/370871DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703381PMC
November 2013

New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake.

Appl Environ Microbiol 2013 Nov 30;79(21):6755-64. Epub 2013 Aug 30.

Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, California, USA.

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http://dx.doi.org/10.1128/AEM.01946-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3811486PMC
November 2013

Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia.

Front Microbiol 2013 13;4:115. Epub 2013 May 13.

Department of Biology, University of Southern California Los Angeles, CA, USA.

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http://dx.doi.org/10.3389/fmicb.2013.00115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3651956PMC
May 2013

Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly.

Appl Environ Microbiol 2012 Sep 6;78(17):6309-20. Epub 2012 Jul 6.

Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, California, USA.

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http://dx.doi.org/10.1128/AEM.01212-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3416638PMC
September 2012

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

ISME J 2012 Jan 30;6(1):81-93. Epub 2011 Jun 30.

Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1038/ismej.2011.78DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246234PMC
January 2012

Microbial metagenomics.

Genome Biol 2005 27;6(10):347. Epub 2005 Sep 27.

The Institute for Genomic Research, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/gb-2005-6-10-347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1257460PMC
December 2006

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences.

J Bacteriol 2006 Apr;188(7):2364-74

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1128/JB.188.7.2364-2374.2006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1428405PMC
April 2006